mRNA_Ecto-sp13_S_contig60777.16732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60777.16732.1
Unique NamemRNA_Ecto-sp13_S_contig60777.16732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A6H5L2R7_9PHAE (PRA-CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.410e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS 162
            MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS
Sbjct:  388 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS 441
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: D8LDR4_ECTSI (Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.890e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS 162
            MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS
Sbjct:  406 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVAS 459
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A4D9D8I2_9STRA (PRA-CH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8I2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.380e-9
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAGV+ ED+E+ LD R+LKL+RRPGNAKA RI   +KIL
Sbjct:  404 MVRCVAAGVTLEDIERHLDARTLKLQRRPGNAKAHRIDAAEKIL 447
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A225X605_9STRA (Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X605_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.600e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKR+LK+KRRPGN+KA RI+  +KIL
Sbjct:  405 MVRCVAAGCKLSDVEKMLDKRALKVKRRPGNSKAYRISAANKIL 448
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A2P4XN02_9STRA (Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XN02_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.610e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKR+LK+KRRPGN+KA RI+  +KIL
Sbjct:  411 MVRCVAAGCKLSDVEKMLDKRALKVKRRPGNSKAYRISAANKIL 454
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A0W8CPE8_PHYNI (PRA-CH domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CPE8_PHYNI)

HSP 1 Score: 59.3 bits (142), Expect = 6.610e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKR+LK+KRRPGN+KA RI+  +KIL
Sbjct:  412 MVRCVAAGCKLSDVEKMLDKRALKVKRRPGNSKAYRISAANKIL 455
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: G4ZRD7_PHYSP (PRA-CH domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZRD7_PHYSP)

HSP 1 Score: 59.3 bits (142), Expect = 6.610e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKR+LK+KRRPGN+KA RI+  +KIL
Sbjct:  413 MVRCVAAGCKLSDVEKMLDKRALKVKRRPGNSKAYRISAANKIL 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A3M6VHV5_9STRA (PRA-CH domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHV5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.020e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKR+LK+KRRPGN+KA RIA  ++IL
Sbjct:  409 MVRCVAAGCKLSDVEKMLDKRALKVKRRPGNSKAYRIAAANEIL 452
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A0P1ABD3_PLAHL (Phosphoribosyl-atp diphosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABD3_PLAHL)

HSP 1 Score: 58.9 bits (141), Expect = 9.030e-9
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 132
            MVRC AAG    DVEK LDKRSLK+KRRPGN+KA RI+  + IL
Sbjct:  413 MVRCVAAGCKLSDVEKMLDKRSLKVKRRPGNSKAHRISAANDIL 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Match: A0A835ZKL0_9STRA (PRA-CH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.030e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGA 138
            +VRCAAAGV   +V   LD+R+LKL+RRPGNAKA RIA GD IL A
Sbjct:  416 LVRCAAAGVGLREVGDWLDRRALKLRRRPGNAKAHRIAAGDAILKA 461
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60777.16732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2R7_9PHAE3.410e-25100.00PRA-CH domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDR4_ECTSI3.890e-25100.00Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarp... [more]
A0A4D9D8I2_9STRA1.380e-968.18PRA-CH domain-containing protein n=1 Tax=Nannochlo... [more]
A0A225X605_9STRA6.600e-968.18Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophth... [more]
A0A2P4XN02_9STRA6.610e-968.18Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophth... [more]
A0A0W8CPE8_PHYNI6.610e-968.18PRA-CH domain-containing protein n=12 Tax=Phytopht... [more]
G4ZRD7_PHYSP6.610e-968.18PRA-CH domain-containing protein n=6 Tax=Phytophth... [more]
A0A3M6VHV5_9STRA9.020e-968.18PRA-CH domain-containing protein n=2 Tax=Peronospo... [more]
A0A0P1ABD3_PLAHL9.030e-968.18Phosphoribosyl-atp diphosphatase n=1 Tax=Plasmopar... [more]
A0A835ZKL0_9STRA9.030e-967.39PRA-CH domain-containing protein n=1 Tax=Tribonema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60777contigEcto-sp13_S_contig60777:1..676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.3
Seed ortholog evalue4.5e-21
Seed eggNOG ortholog2880.D8LDR4
Preferred nameHIS4
Model size162
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.phosphoribosyl-ATP diphosphatase activity
EggNOG OGsCOG0139@1,KOG4311@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001685.1
EC1.1.1.23,3.5.4.19,3.6.1.31
Cds size162
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.7369769-CDS-Ecto-sp13_S_contig60777:0..741681463846.7369769-CDS-Ecto-sp13_S_contig60777:0..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60777 1..74 -
1681463846.749727-CDS-Ecto-sp13_S_contig60777:588..6761681463846.749727-CDS-Ecto-sp13_S_contig60777:588..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60777 589..676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60777.16732.1prot_Ecto-sp13_S_contig60777.16732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60777 1..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60777.16732.1

>prot_Ecto-sp13_S_contig60777.16732.1 ID=prot_Ecto-sp13_S_contig60777.16732.1|Name=mRNA_Ecto-sp13_S_contig60777.16732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKT
QVAS
back to top

mRNA from alignment at Ecto-sp13_S_contig60777:1..676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60777.16732.1 ID=mRNA_Ecto-sp13_S_contig60777.16732.1|Name=mRNA_Ecto-sp13_S_contig60777.16732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60777:1..676- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGTGCGCAGCGGCTGGCGTTAGCTGGGAGGACGTGGAGAAGGA
GCTCGACAAGCGCTCTCTCAAGCTTAAGCGCCGCCCAGGTATTCCTTCTC
TTTGATCTGTTCTTTTTCGTTCAAGGCTTTTTTTGCTTATCGGTTCTGGT
TCATCCAGTATTGTTGGAGTTCCTACACGGCAAAAAAAAATCGCTCGTAT
GAAGTTATGAATGAAAGCATTTGTGCGCAGAACGAACTATGCTGTGTATT
GGTGCTCGTCAATTCGGTTGTGTTGTCTGATGTTCGGGTTTGTTGGGAAG
GACATACACAGCAGTGTTTCCCCACTTGCGGCCCTTTCCTTCCGCCTCTT
GGACACGGCAGTATCGCACTTTACAGAACGCTCTACCCACTTTAAGAACC
TATCGATTCGCCCGATGAGAGAATCGTTTCTAGTTGTTTCTACGGAGTGA
CCCTTTACAGCGACCATCACCTCTGAGTAAAAAATGGCAGAATTATTTCC
TAAGCACCTGTTCATATGGCCAGGTTGTTAAATATATCACACGACGTATT
TTTTTTGCCCTGAAGTTGTCATCCCCCCCCGTTCTCGCTCGCCTGAAACC
AGGAAACGCGAAAGCAGAGCGCATCGCGGAGGGGGACAAGATCCTTGGCG
CGGGTCGCAAAACTCAAGTGGCGAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60777:1..676-

>mRNA_Ecto-sp13_S_contig60777.16732.1 ID=mRNA_Ecto-sp13_S_contig60777.16732.1|Name=mRNA_Ecto-sp13_S_contig60777.16732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60777:1..676- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGTGCGCAGCGGCTGGCGTTAGCTGGGAGGACGTGGAGAAGGA
GCTCGACAAGCGCTCTCTCAAGCTTAAGCGCCGCCCAGGAAACGCGAAAG
CAGAGCGCATCGCGGAGGGGGACAAGATCCTTGGCGCGGGTCGCAAAACT
CAAGTGGCGAGC
back to top