mRNA_Ecto-sp13_S_contig60378.16668.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60378.16668.1
Unique NamemRNA_Ecto-sp13_S_contig60378.16668.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.210e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG
Sbjct:  174 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 243
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: D8LGJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.340e-33
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGN++AGGQEWKALTLNMFDAAREGGGVVTQ +MLEMVASIGAATPYSMANATG
Sbjct:  169 NKATKSQGRSSALKDSVGNSYAGGQEWKALTLNMFDAAREGGGVVTQDQMLEMVASIGAATPYSMANATG 238
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: D8LEN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.690e-32
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGN++AGGQEWKALTLNMFDAAREGGGVVTQ +MLEMVASIGAATPYSMANATG
Sbjct:  460 NKATKSQGRSSALKDSVGNSYAGGQEWKALTLNMFDAAREGGGVVTQDQMLEMVASIGAATPYSMANATG 529
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: D7FIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 8.720e-32
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSAL DSVGNA+AGGQEWKALTLNMFDAAREGGGVVTQ +MLEMVASIGAATPYSMANATG
Sbjct:  523 NKATKSQGRSSALNDSVGNAYAGGQEWKALTLNMFDAAREGGGVVTQDQMLEMVASIGAATPYSMANATG 592
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.300e-31
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGNA+AGGQEWKALTLNM DAAREGGGVVTQ +MLEMVAS+GAATPYSMANATG
Sbjct:  111 NKATKSQGRSSALKDSVGNAYAGGQEWKALTLNMIDAAREGGGVVTQDQMLEMVASVGAATPYSMANATG 180
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.790e-31
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGNA+AGGQEWKALTLNM DAAREGGGVVTQ +MLEMVAS+GAATPYSMANATG
Sbjct: 1282 NKATKSQGRSSALKDSVGNAYAGGQEWKALTLNMIDAAREGGGVVTQDQMLEMVASVGAATPYSMANATG 1351
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: D7FV07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV07_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 8.800e-31
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGN++AGGQEWK L LNMFDAAREGGGVVTQ +MLEMVASIGAATPYSMANATG
Sbjct:  168 NKATKSQGRSSALKDSVGNSYAGGQEWKVLKLNMFDAAREGGGVVTQDQMLEMVASIGAATPYSMANATG 237
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.360e-29
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATK QGRSSALKDSV NA+AGGQEWKALTLNMFDAAREGGGVVTQ +MLEMVASI AATPYSMANATG
Sbjct:  393 NKATKRQGRSSALKDSVRNAYAGGQEWKALTLNMFDAAREGGGVVTQDQMLEMVASIRAATPYSMANATG 462
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5JI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI43_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.700e-29
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATK+QGRSSALKDSVGNA+AGG EWKA  LN+ DA REGGGVVTQ +MLEMV SIGAATPYSMANATG
Sbjct:  249 NKATKTQGRSSALKDSVGNAYAGGNEWKAWALNLLDAVREGGGVVTQGQMLEMVGSIGAATPYSMANATG 318
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BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Match: A0A6H5JND3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.080e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATG 210
            NKATKSQGRSSALKDSVGN +A  Q+WKALTLNMFDAAREG GVV Q +MLEMVASIGAATPYSMANATG
Sbjct:  443 NKATKSQGRSSALKDSVGNPYAAEQQWKALTLNMFDAAREGRGVVAQDQMLEMVASIGAATPYSMANATG 512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60378.16668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAK2_9PHAE2.210e-34100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LGJ2_ECTSI1.340e-3394.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEN1_ECTSI3.690e-3294.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIA9_ECTSI8.720e-3294.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTD3_9PHAE1.300e-3192.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.790e-3192.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FV07_ECTSI8.800e-3191.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYE1_9PHAE1.360e-2991.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI43_9PHAE5.700e-2984.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JND3_9PHAE1.080e-2787.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60378contigEcto-sp13_S_contig60378:265..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score125.9
Seed ortholog evalue7.2e-27
Seed eggNOG ortholog2880.D7FIA9
Model size212
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2D5KK@1,2SYVY@2759
Cds size210
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.1010375-CDS-Ecto-sp13_S_contig60378:264..4741681463841.1010375-CDS-Ecto-sp13_S_contig60378:264..474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60378 265..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60378.16668.1prot_Ecto-sp13_S_contig60378.16668.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60378 265..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60378.16668.1

>prot_Ecto-sp13_S_contig60378.16668.1 ID=prot_Ecto-sp13_S_contig60378.16668.1|Name=mRNA_Ecto-sp13_S_contig60378.16668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
NKATKSQGRSSALKDSVGNAFAGGQEWKALTLNMFDAAREGGGVVTQAKM
LEMVASIGAATPYSMANATG
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mRNA from alignment at Ecto-sp13_S_contig60378:265..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60378.16668.1 ID=mRNA_Ecto-sp13_S_contig60378.16668.1|Name=mRNA_Ecto-sp13_S_contig60378.16668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60378:265..476+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTCCGT
CGGCAATGCCTTCGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGAACA
TGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGCCAAGATG
CTGGAAATGGTGGCTTCCATAGGAGCGGCCACGCCGTACAGCATGGCCAA
CGCGACGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60378:265..476+

>mRNA_Ecto-sp13_S_contig60378.16668.1 ID=mRNA_Ecto-sp13_S_contig60378.16668.1|Name=mRNA_Ecto-sp13_S_contig60378.16668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60378:265..476+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTCCGT
CGGCAATGCCTTCGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGAACA
TGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGCCAAGATG
CTGGAAATGGTGGCTTCCATAGGAGCGGCCACGCCGTACAGCATGGCCAA
CGCGACGGGA
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