mRNA_Ecto-sp13_S_contig6035.16658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6035.16658.1
Unique NamemRNA_Ecto-sp13_S_contig6035.16658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: B5LWN4_9PHYC (Putative ubiquitin-like putative cysteine protease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN4_9PHYC)

HSP 1 Score: 177 bits (448), Expect = 5.540e-50
Identity = 111/308 (36.04%), Postives = 159/308 (51.62%), Query Frame = 1
Query:    1 RCMRPNPWTMFLIRMGGQGFDRKAVSDMYKKWKREFHARNPSLLSESEMKAKMNEDLCQDIAETNLEAKKGKAP---FFTERPVPRDWNLYKSNKSLEFIDL--YFGSGRSRIGLHLHGDSLKTLMPRKWLNDDVINAYMVLLQRNN---SSQKNIFMNTFFYTQFTAPDVRHAL-VREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKSFDKQEWTMLHMNVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            +C+ PNPW + LI+M GQGF RK +S  Y+  ++E   R  + +S SE K   N+++C DI    + AKK + P   FFT++PVP  W+ +KS    EF       G   +   +  + + +    P  W ND++I+AYM LL  ++   S QK  F N FFY       +RH   V  YT+G+ TT   +IF+PVN   NHW LIV+D  K +V   DS +         +  W           +   +WT  +   P+Q NT DCGVFVC+ AA  +N R   ++   M   R R+A SI+N RL
Sbjct:   18 KCLSPNPWILHLIQMSGQGFTRKEISQKYRA-RKEIVKRRTAHMSPSEAKKLANKNMCADIHAGRIRAKKTQTPRQSFFTDKPVPSTWS-WKSISPFEFNHKTNLGGDAYAECSVKFNNNDISLFGPTGWFNDNIIDAYMALLGGSSNPASKQKAYFFNAFFYEY-----LRHKQSVSGYTNGITTTSHDRIFIPVNVRRNHWILIVVDNGKKKVSCYDSLHRRHIVVLRNIKRWAHS-------IYGTDDWTTEYGTSPLQLNTDDCGVFVCINAALLSNKRKLKYSQEHMAAFRQRIARSIVNGRL 311          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: A0A8H7UDH2_MORIS (ULP_PROTEASE domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UDH2_MORIS)

HSP 1 Score: 118 bits (296), Expect = 7.430e-27
Identity = 70/189 (37.04%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  349 LKTLMPRKWLNDDVINAYMVLL----QRNNSSQKNIFMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKS-FDKQEWTM-LHMNVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            ++ L+P  WLND+VIN YM L+    QRN+        NTFF +  T  D  +A +R +T  ++      + +PVN  L HW L V D  K Q+   DS   +       +L ++++EH+ KKKS +D  EW + + M++P QKN  DCGVF C FA   + D+ F FT  DM  +R  + + I+ +RL
Sbjct:  233 IRKLLPDTWLNDEVINFYMELISERGQRNDKYPTVHCFNTFFCS--TLLDAGYAKIRRWTKRVDIFAKDMVLMPVNSSL-HWTLAVFDFRKKQLAIYDSLGGKNMRLAKALLNYLEEEHMDKKKSAYDTSEWKLHMPMDIPHQKNGDDCGVFACTFAERVSRDQDFDFTQNDMIDLRLNMVFEIIQKRL 418          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: UPI0004F01E88 (LOW QUALITY PROTEIN: sentrin-specific protease 2-like n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F01E88)

HSP 1 Score: 115 bits (288), Expect = 2.140e-25
Identity = 75/216 (34.72%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  289 IDLYFGSGR------SRIGLHLHGDSLKTLMPRKWLNDDVINAYMVLLQRNNSSQKNIFMN---TFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKK-SFDKQEWTMLHMN---VPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            I   FG G       S   L +  + ++TL   +WLND+VIN YM+LL   +  +    ++   TFFY + T+    HA VR +T G++      + VPV H  +HW L VID+ K  +   DS  ++R+     + +++Q+E  +K+K      EWT   M    +P Q N  DCGVFVC +A Y A DR  TFT   M   R ++ W I++++L
Sbjct:  288 ISAAFGKGEPDEIMSSAFKLKVTREDIQTLDNLRWLNDEVINFYMILLVERSKKEGYPAVHAFSTFFYPKLTSGG--HAAVRRWTKGVDLFKQDLVLVPV-HLRSHWTLAVIDMRKKAIKYYDSLGQKRDKICETLFKYLQEESREKRKMELVFSEWTFHSMEPHEIPQQLNGSDCGVFVCAYADYVARDRAMTFTQDHMPYFRKKMVWEIIHQQL 500          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: UPI001CFF051D (sentrin-specific protease 2-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFF051D)

HSP 1 Score: 115 bits (289), Expect = 2.490e-25
Identity = 69/191 (36.13%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  349 LKTLMPRKWLNDDVINAYMVLL----QRNNSSQKNIFMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKS-FDKQEWTM---LHMNVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            L+TL   +WLND++IN Y+ LL    Q+    + + F +TFFY + T    +   VR +T GL+      I VP+ H   HW+L+ ID+ K  +  +DS   +  +    ML+++Q+E   K+ +  D  EWT+      ++P Q NT DCGVF+C +A Y + D+PFTFT   M   R R+ W IL +++
Sbjct:  397 LQTLSDSQWLNDEIINFYLRLLVDRSQKRGLPRLHAF-STFFYPKLTTAGYQG--VRRWTKGLDLFQQDLILVPI-HQRAHWSLLSIDLRKKTIKHLDSMAGKDPHIHTRMLQYLQEESKSKRNTELDPTEWTLDTDQSWDIPQQSNTSDCGVFLCKYADYISQDKPFTFTQNHMPHFRKRMVWEILQQQV 583          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: A0A1X2GEM0_9FUNG (Cysteine proteinase (Fragment) n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GEM0_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 2.620e-24
Identity = 65/190 (34.21%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  349 LKTLMPRKWLNDDVINAYMVLL-QRNNSSQK----NIFMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKS-FDKQEWTMLHM-NVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            ++ L+P  WLND++IN YM+LL +R+N S      + F NTFF +  T  D  +  VR +T  ++      + +P+N    HW L  +D+ K Q+   DS N +  +    +  ++ QEH  KKK+ FD   W+ + + ++P Q+N+ DCGVF C FA +   D P  F+  DM  +R R+ + I  + L
Sbjct:  108 IQKLLPETWLNDEIINFYMLLLMERSNKSSAFPSIHCF-NTFFCS--TLRDQGYDKVRRWTKRVDIFSKDLVLIPINRSY-HWTLGAVDMNKKQISVYDSLNGDHSHTIKLLFRYLDQEHADKKKAPFDATGWSGVTLTDIPQQENSSDCGVFTCTFAEHLTRDAPLNFSQADMVPIRRRMVFDISQKEL 293          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: A0A8H7RCA8_9FUNG (ULP_PROTEASE domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RCA8_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 1.810e-23
Identity = 64/185 (34.59%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  358 LMPRKWLNDDVINAYMVLLQRNNSSQKNIFMNTFFYTQF---TAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKS-FDKQEWTM-LHMNVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            L P  WLND++IN Y  LL    + +   F +   ++ F   T  D   A V+ +T  ++      IF+P+N    HW L VID+++  VI  DS     +++    + ++QQEH+ KKKS  D  +W +    ++P Q N  DCG F C FA   + + PF F+ RDM  +R R+   ILN+ L
Sbjct:  170 LKPETWLNDEIINFYFELLSERQTREG--FPSIHCFSSFFCSTLRDQGFAKVKRWTKRVDIFAKDLIFIPINQSY-HWTLGVIDMKRKAVIVYDSMGGNHDHSLELFMNYLQQEHLDKKKSPLDTSDWKLETPKDIPQQGNMSDCGAFTCTFAERLSRNEPFNFSQRDMVPIRRRMVLDILNKTL 351          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: V9KUB5_CALMI (Sentrin-specific protease 2 (Fragment) n=2 Tax=Callorhinchus milii TaxID=7868 RepID=V9KUB5_CALMI)

HSP 1 Score: 105 bits (261), Expect = 4.880e-22
Identity = 60/188 (31.91%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  355 TLMPRKWLNDDVINAYMVLLQRNNSSQKNI---FMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKK-KSFDKQEWTMLHMN---VPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            TL    WLND+VIN YM L+         +     +TFFY +  +    H  VR++T   N      I +PV+  + HW L V D+ +  ++ +DS  +  +    E+L+++ +E  +K+ ++ +  +W +  +    +P Q+N+ DCGVFVC +A Y   D+P TFT  D+   R R+ W IL++ L
Sbjct:  223 TLCNNCWLNDEVINFYMCLIVERGRGPGQLRAHAFSTFFYLKLQSGG--HHAVRQWTKATNLFHQHLILMPVHLGM-HWCLAVADLRERAILYLDSLGQSNDAVCRELLQYLDEESQRKRGQTLNSAQWILRSLTANEIPQQRNSSDCGVFVCKYAEYMTRDQPITFTQGDVLHFRRRMVWEILHQTL 407          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: A0A024G250_9STRA (ULP_PROTEASE domain-containing protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G250_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.740e-22
Identity = 67/200 (33.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  319 RIGLHLHGDSLKTLMPRKWLNDDVINAYMVLLQRNNSS-------QKNI-FMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKS---FDKQEWTMLHMNVPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSIL 885
            +  + L     + L+P++WLND++IN +  LLQ +N++       +K+  F N+FFYT+ +     +  VR +T  ++  G  KIFVPVN    HW L VI ++  ++   DS           +  +I  E   KK +    D  E     ++ P QKN  DCGVF C+FA Y A++    F  RDM   R R+A++IL
Sbjct:  249 KFNVDLTRQHFRRLLPKQWLNDEIINFWFQLLQESNAALAHSGEPEKSCHFFNSFFYTKVSEDGYNYRNVRRWTRKVDLFGMDKIFVPVNLSNTHWCLAVIFMKDKKIQYYDSMRGCGLRCLETLRRYICDEMKDKKNTEIVVDDWELIPTTIDTPQQKNGFDCGVFTCIFAEYVASNHALDFVQRDMEYHRQRMAYNIL 448          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: V9KVP6_CALMI (Sentrin-specific protease 2 (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9KVP6_CALMI)

HSP 1 Score: 105 bits (261), Expect = 7.910e-22
Identity = 60/188 (31.91%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  355 TLMPRKWLNDDVINAYMVLLQRNNSSQKNI---FMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKK-KSFDKQEWTMLHMN---VPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            TL    WLND+VIN YM L+         +     +TFFY +  +    H  VR++T   N      I +PV+  + HW L V D+ +  ++ +DS  +  +    E+L+++ +E  +K+ ++ +  +W +  +    +P Q+N+ DCGVFVC +A Y   D+P TFT  D+   R R+ W IL++ L
Sbjct:  278 TLCNNCWLNDEVINFYMCLIVERGRGPGQLRAHAFSTFFYLKLQSGG--HHAVRQWTKATNLFHQHLILMPVHLGM-HWCLAVADLRERAILYLDSLGQSNDAVCRELLQYLDEESQRKRGQTLNSAQWILRSLTANEIPQQRNSSDCGVFVCKYAEYMTRDQPITFTQGDVLHFRRRMVWEILHQTL 462          
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Match: UPI001C3F8851 (uncharacterized protein LOC103191445 isoform X2 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3F8851)

HSP 1 Score: 105 bits (261), Expect = 8.360e-22
Identity = 60/188 (31.91%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  355 TLMPRKWLNDDVINAYMVLLQRNNSSQKNI---FMNTFFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVEKDQVISMDSFNEEREYATGEMLEWIQQEHIQKK-KSFDKQEWTMLHMN---VPVQKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRL 897
            TL    WLND+VIN YM L+         +     +TFFY +  +    H  VR++T   N      I +PV+  + HW L V D+ +  ++ +DS  +  +    E+L+++ +E  +K+ ++ +  +W +  +    +P Q+N+ DCGVFVC +A Y   D+P TFT  D+   R R+ W IL++ L
Sbjct:  286 TLCNNCWLNDEVINFYMCLIVERGRGPGQLRAHAFSTFFYLKLQSGG--HHAVRQWTKATNLFHQHLILMPVHLGM-HWCLAVADLRERAILYLDSLGQSNDAVCRELLQYLDEESQRKRGQTLNSAQWILRSLTANEIPQQRNSSDCGVFVCKYAEYMTRDQPITFTQGDVLHFRRRMVWEILHQTL 470          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWN4_9PHYC5.540e-5036.04Putative ubiquitin-like putative cysteine protease... [more]
A0A8H7UDH2_MORIS7.430e-2737.04ULP_PROTEASE domain-containing protein n=1 Tax=Mor... [more]
UPI0004F01E882.140e-2534.72LOW QUALITY PROTEIN: sentrin-specific protease 2-l... [more]
UPI001CFF051D2.490e-2536.13sentrin-specific protease 2-like n=1 Tax=Gracilina... [more]
A0A1X2GEM0_9FUNG2.620e-2434.21Cysteine proteinase (Fragment) n=1 Tax=Hesseltinel... [more]
A0A8H7RCA8_9FUNG1.810e-2334.59ULP_PROTEASE domain-containing protein n=1 Tax=Muc... [more]
V9KUB5_CALMI4.880e-2231.91Sentrin-specific protease 2 (Fragment) n=2 Tax=Cal... [more]
A0A024G250_9STRA5.740e-2233.50ULP_PROTEASE domain-containing protein n=3 Tax=Alb... [more]
V9KVP6_CALMI7.910e-2231.91Sentrin-specific protease 2 (Fragment) n=1 Tax=Cal... [more]
UPI001C3F88518.360e-2231.91uncharacterized protein LOC103191445 isoform X2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6035contigEcto-sp13_S_contig6035:318..2051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score119.8
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog9031.ENSGALP00000010482
Preferred nameSENP2
Model size906
KEGG koko:K03345
KEGG Pathwayko03013,ko04310,map03013,map04310
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001701,GO:0001890,GO:0001892,GO:0001932,GO:0001934,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0007346,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009790,GO:0009792,GO:0009798,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010648,GO:0012505,GO:0016604,GO:0016787,GO:0016925,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0022414,GO:0023051,GO:0023057,GO:0030111,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031397,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031647,GO:0031648,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032091,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032875,GO:0032991,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043516,GO:0043518,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045444,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0060706,GO:0060707,GO:0060711,GO:0060712,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090329,GO:0097708,GO:0140096,GO:1901564,GO:1901796,GO:1901797,GO:1901987,GO:1901990,GO:1902531,GO:1902532,GO:1902680,GO:1902806,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:1903508,GO:2000045,GO:2000112,GO:2001020,GO:2001021,GO:2001141
Exons3
EggNOG free text desc.Ulp1 protease family, C-terminal catalytic domain
EggNOG OGs39WIM@33154,3BJF9@33208,3D329@33213,489ZC@7711,48VBD@7742,4GRFY@8782,COG5160@1,KOG0778@2759
EC3.4.22.68
Cds size900
COG Functional cat.O
Best tax levelAves
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.5423017-UTR-Ecto-sp13_S_contig6035:317..3231681463840.5423017-UTR-Ecto-sp13_S_contig6035:317..323Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6035 318..323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.5565708-CDS-Ecto-sp13_S_contig6035:323..5131681463840.5565708-CDS-Ecto-sp13_S_contig6035:323..513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 324..513 +
1681463840.5674536-CDS-Ecto-sp13_S_contig6035:1281..15621681463840.5674536-CDS-Ecto-sp13_S_contig6035:1281..1562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 1282..1562 +
1681463840.5759244-CDS-Ecto-sp13_S_contig6035:1622..20511681463840.5759244-CDS-Ecto-sp13_S_contig6035:1622..2051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 1623..2051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6035.16658.1prot_Ecto-sp13_S_contig6035.16658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6035 324..2051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6035.16658.1

>prot_Ecto-sp13_S_contig6035.16658.1 ID=prot_Ecto-sp13_S_contig6035.16658.1|Name=mRNA_Ecto-sp13_S_contig6035.16658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MRPNPWTMFLIRMGGQGFDRKAVSDMYKKWKREFHARNPSLLSESEMKAK
MNEDLCQDIAETNLEAKKGKAPFFTERPVPRDWNLYKSNKSLEFIDLYFG
SGRSRIGLHLHGDSLKTLMPRKWLNDDVINAYMVLLQRNNSSQKNIFMNT
FFYTQFTAPDVRHALVREYTSGLNTTGAVKIFVPVNHDLNHWALIVIDVE
KDQVISMDSFNEEREYATGEMLEWIQQEHIQKKKSFDKQEWTMLHMNVPV
QKNTVDCGVFVCMFAAYFANDRPFTFTHRDMTKMRARLAWSILNRRLDN*
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mRNA from alignment at Ecto-sp13_S_contig6035:318..2051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6035.16658.1 ID=mRNA_Ecto-sp13_S_contig6035.16658.1|Name=mRNA_Ecto-sp13_S_contig6035.16658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:318..2051+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCATGAGGCCAAACCCCTGGACTATGTTCCTCATAAGAATGGGTGG CCAAGGGTTTGACAGAAAAGCTGTGTCGGACATGTACAAGAAATGGAAGC GAGAATTCCATGCACGAAACCCCAGTCTATTAAGCGAAAGCGAAATGAAG GCGAAGATGAACGAAGACCTGTGTCAGGATATTGCTGAAACGAATCGTCG TGCTCGATCTCGCAAGTCATCCAAGCATTTGAAATAAACAAGAGAACGTC GAAGGAAGACCGCCAAAAAGAATGCAGAAGTAAGAAGAAGAGAAGCAGTG GCGGAAGCTAAAGCTAAAGAAAATGCCAGAGCCGAAGAAAAGAAGGCCGC TAAAGCAGCGGATGCCAATGCCAAATCCAAGGCCAGTGCGAAGGCGGCGA AAGCCAGTGATAGGGCCAGGGCCAAGGCAGCGAAAGCCAATGAAAGAGCG AAGGTCAAATCGGCGAAAGACAAAGCCAATGCCAAAGAAGCGAACGAGAA GACAAAGAGAGCCGCGGAAGCAAAGAAATCGAAAGACAGGAGATCTACAG CCCTTGGCTGGGATTGTGTTAGACCGCACAAAGTCACTAGCTCTAGGAAG GAGAAATTCAACAGCTGTGAAAAACGACCCGGAGGAAAGTACGGCAGTCG CGGGCAATGCGTAGAAAATTGCTACACTACTACGTTCTCATCAAAAGAAG TCAATGCTTTAAAAGACGAGGTCACAGCCAAAGAGGCGGTGGCCCAAGCC GAAGCAGCTGCGAAAAAAGCCAAAGCCAAAGCCAAGGCCAAGGCCAAGGA CAAAGCACGCGCGAAAGACGCCGAGGCTGAAGCCAGAGCCAAAGCAAAAT GGGAAGAAGCGAAGGCCAAGGCCAGAGCCAAGGCAGCTGCGAAAGCAGCG ACAGCCCGAGCAAGAGCCAAAGAAGCGGAAACCAAAGCGAAGGAAGCCGT GAAAGCAGCGGAAGTCGAAGCCAAGAAAGGTAAGGCCCCGTTTTTCACCG AACGGCCTGTTCCACGCGACTGGAATCTGTACAAGAGTAATAAGAGCTTA GAATTCATCGACCTTTACTTTGGATCGGGGAGGTCAAGGATCGGGTTACA CCTGCATGGGGACTCGCTGAAAACGTTGATGCCTAGGAAGTGGTTAAACG ACGACGTGATAAACGCGTACATGGTTCTCCTTCAGCGCAACAACTCGAGC CAGAAAAATATTTTCATGAATACCTTCTTTTACACCCAGTTTACTGTAAC CGGCGAACAGTTGCCCGGTGAAAAGAAACGACATGATTCAAAATTTAAAG ACAAGGCACCGGATGTTCGCCACGCCCTTGTGCGGGAATATACCAGTGGT CTCAACACGACCGGTGCTGTGAAAATTTTTGTTCCCGTAAACCACGACCT CAATCACTGGGCTTTGATTGTCATTGATGTGGAGAAAGACCAGGTAATAT CCATGGACAGTTTCAACGAAGAACGAGAATACGCGACGGGTGAGATGTTG GAGTGGATTCAACAGGAGCATATTCAAAAAAAGAAGTCGTTCGACAAACA GGAGTGGACCATGCTGCATATGAATGTCCCGGTCCAAAAAAATACTGTCG ACTGTGGTGTGTTCGTTTGCATGTTTGCCGCGTACTTCGCCAACGACAGG CCCTTTACATTTACGCACAGAGACATGACGAAGATGAGGGCAAGACTGGC TTGGTCAATATTGAATAGGCGACTTGACAATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6035:318..2051+

>mRNA_Ecto-sp13_S_contig6035.16658.1 ID=mRNA_Ecto-sp13_S_contig6035.16658.1|Name=mRNA_Ecto-sp13_S_contig6035.16658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:318..2051+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCCAAACCCCTGGACTATGTTCCTCATAAGAATGGGTGGCCAAGG
GTTTGACAGAAAAGCTGTGTCGGACATGTACAAGAAATGGAAGCGAGAAT
TCCATGCACGAAACCCCAGTCTATTAAGCGAAAGCGAAATGAAGGCGAAG
ATGAACGAAGACCTGTGTCAGGATATTGCTGAAACGAATCTCGAAGCCAA
GAAAGGTAAGGCCCCGTTTTTCACCGAACGGCCTGTTCCACGCGACTGGA
ATCTGTACAAGAGTAATAAGAGCTTAGAATTCATCGACCTTTACTTTGGA
TCGGGGAGGTCAAGGATCGGGTTACACCTGCATGGGGACTCGCTGAAAAC
GTTGATGCCTAGGAAGTGGTTAAACGACGACGTGATAAACGCGTACATGG
TTCTCCTTCAGCGCAACAACTCGAGCCAGAAAAATATTTTCATGAATACC
TTCTTTTACACCCAGTTTACTGCACCGGATGTTCGCCACGCCCTTGTGCG
GGAATATACCAGTGGTCTCAACACGACCGGTGCTGTGAAAATTTTTGTTC
CCGTAAACCACGACCTCAATCACTGGGCTTTGATTGTCATTGATGTGGAG
AAAGACCAGGTAATATCCATGGACAGTTTCAACGAAGAACGAGAATACGC
GACGGGTGAGATGTTGGAGTGGATTCAACAGGAGCATATTCAAAAAAAGA
AGTCGTTCGACAAACAGGAGTGGACCATGCTGCATATGAATGTCCCGGTC
CAAAAAAATACTGTCGACTGTGGTGTGTTCGTTTGCATGTTTGCCGCGTA
CTTCGCCAACGACAGGCCCTTTACATTTACGCACAGAGACATGACGAAGA
TGAGGGCAAGACTGGCTTGGTCAATATTGAATAGGCGACTTGACAATTAA
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