mRNA_Ecto-sp13_S_contig60247.16642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60247.16642.1
Unique NamemRNA_Ecto-sp13_S_contig60247.16642.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60247.16642.1 vs. uniprot
Match: D7FKB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.980e-17
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:   32 MNSALFHSARPGDIRSGGTAGGLGGRAAGNSGRVGMREAAALAKEMGFGQDFGPQVGSI 208
            MNSALFHSARPGDIRSG TAGGLG      SGRVGMREAAALAKEMGFGQDFGPQ  ++
Sbjct:    1 MNSALFHSARPGDIRSGRTAGGLGXXXXXXSGRVGMREAAALAKEMGFGQDFGPQAANM 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60247.16642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKB5_ECTSI9.980e-1781.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60247contigEcto-sp13_S_contig60247:55..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size720
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.0065866-CDS-Ecto-sp13_S_contig60247:54..2891681463839.0065866-CDS-Ecto-sp13_S_contig60247:54..289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60247 55..289 +
1681463839.0175579-CDS-Ecto-sp13_S_contig60247:301..5281681463839.0175579-CDS-Ecto-sp13_S_contig60247:301..528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60247 302..528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.0295138-UTR-Ecto-sp13_S_contig60247:528..7841681463839.0295138-UTR-Ecto-sp13_S_contig60247:528..784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig60247 529..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60247.16642.1prot_Ecto-sp13_S_contig60247.16642.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60247 55..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60247.16642.1

>prot_Ecto-sp13_S_contig60247.16642.1 ID=prot_Ecto-sp13_S_contig60247.16642.1|Name=mRNA_Ecto-sp13_S_contig60247.16642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
PSCFQHTRSKHELRALSLGETGRHPIWRNSRRVGWESSGQQRSCWNAGSG
GAREGDGLWARFRSTGRQHHPPYVAPFHAVVCPHIDAHERTDVSISVSLV
CILYVDEDSHPGTGKTGSSFRIRSMQGALVRRGDGCGRSSLLLYAISIIP
SLL*
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mRNA from alignment at Ecto-sp13_S_contig60247:55..784+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60247.16642.1 ID=mRNA_Ecto-sp13_S_contig60247.16642.1|Name=mRNA_Ecto-sp13_S_contig60247.16642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60247:55..784+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCTTGCTTTCAGCACACGCGTAGCAAACATGAACTCCGCGCTCTTTC
ACTCGGCGAGACCGGGAGACATCCGATCTGGCGGAACAGCCGGAGGGTTG
GGTGGGAGAGCAGCGGGCAACAGCGGTCGTGTTGGAATGCGGGAAGCGGC
GGCGCTCGCGAAGGAGATGGGCTTTGGGCAAGATTTCGGTCCACAGGTCG
GCAGCATCACCCTCCATACGTTGCTCCGTTTCATGGTCATCCTACAGCAG
TAGTCTGCCCGCATATAGATGCGCACGAGCGGACGGATGTTTCCATATCT
GTATCTCTTGTGTGTATTCTTTACGTGGACGAAGACTCGCACCCAGGCAC
GGGGAAAACAGGCTCTTCGTTCCGCATACGCTCTATGCAGGGTGCATTGG
TCAGGCGGGGCGATGGTTGTGGCCGGTCTTCCCTGCTTCTCTACGCAATA
TCCATCATTCCATCTTTGTTGTGATGCTCGACCTGCTGCAGGCGCAACAT
CGTACTGTAGCCTGTTTTGGGCTGACCACAAGCTGACCAAGGCTTTCCAC
TCGTTTCCGCGTTGCCACCACCTCCTTAAAAGTCACCTCAAACTCGTCCA
CTGTCAAAAACGGTCTCACGAAAATCCGACGTAATATGCCGTGTGCTCAC
CGTGAACCACAGGCTGCAAACATGTGGAAAATGCTTGACGACCTCGCCGT
CACGGACAGCGCCGCTTATGTAGAAATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60247:55..784+

>mRNA_Ecto-sp13_S_contig60247.16642.1 ID=mRNA_Ecto-sp13_S_contig60247.16642.1|Name=mRNA_Ecto-sp13_S_contig60247.16642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60247:55..784+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCTTGCTTTCAGCACACGCGTAGCAAACATGAACTCCGCGCTCTTTC
ACTCGGCGAGACCGGGAGACATCCGATCTGGCGGAACAGCCGGAGGGTTG
GGTGGGAGAGCAGCGGGCAACAGCGGTCGTGTTGGAATGCGGGAAGCGGC
GGCGCTCGCGAAGGAGATGGGCTTTGGGCAAGATTTCGGTCCACAGGTCG
GCAGCATCACCCTCCATACGTTGCTCCGTTTCATGCAGTAGTCTGCCCGC
ATATAGATGCGCACGAGCGGACGGATGTTTCCATATCTGTATCTCTTGTG
TGTATTCTTTACGTGGACGAAGACTCGCACCCAGGCACGGGGAAAACAGG
CTCTTCGTTCCGCATACGCTCTATGCAGGGTGCATTGGTCAGGCGGGGCG
ATGGTTGTGGCCGGTCTTCCCTGCTTCTCTACGCAATATCCATCATTCCA
TCTTTGTTGTGA
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