mRNA_Ecto-sp13_S_contig60179.16635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: D7FHW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHW3_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.580e-47 Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1
Query: 1 MRAVFQLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
MR VFQLADEMKAQIAVRDRVHRLRVYP CFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD
Sbjct: 591 MRGVFQLADEMKAQIAVRDRVHRLRVYPRCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 675
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A6H5K2H7_9PHAE (DEP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2H7_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.340e-14 Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 16 QLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQF 249
++A+ M+ ++ + DR +RLR YPSCF G +AVQWM+ AS V AE +G+ ++ VF H+ H+FE+ ++Y+F
Sbjct: 15 EVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRF 92
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A2K3DW24_CHLRE (DEP domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DW24_CHLRE) HSP 1 Score: 73.6 bits (179), Expect = 2.340e-13 Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 10 VFQLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
+ QLA M+ + ++DR + R Y +CF G+EAV W++ A+ EA +GN MM+A +F H++ H FED ++Y+FTD
Sbjct: 9 LLQLATAMRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTD 90
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A4Y6Q314_9DELT (FAD-containing oxidoreductase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q314_9DELT) HSP 1 Score: 73.2 bits (178), Expect = 3.120e-13 Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 16 QLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFT 252
+L ++++ + + DR +RL Y CF G EA WM++ A + EAE IGN +++A VF H+L H FE+ ++Y+F+
Sbjct: 5 ELIEKLRENVEITDRTYRLETYEDCFVGEEACAWMVEAGVARDIEEAERIGNLLLEAGVFHHVLREHKFENDYLFYRFS 83
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A7S0N8A5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8A5_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 3.270e-13 Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 19 LADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQF 249
L M A I VRD +H + Y +CF+GREAV+WM+ A S A +GN++++A++ HI N + FE+++++Y+F
Sbjct: 24 LVQRMAAGIPVRDHLHYMLAYEACFTGREAVEWMVGAGEAESAERALCLGNQLLRANLIFHIYNENPFENATIFYRF 100
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 4.360e-13 Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 10 VFQLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
+ QLA ++ + V+DR + R Y +CF G+EAV W++ A+ EA +GN MM+A +F H++ H FED ++Y+FTD
Sbjct: 9 LLQLAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTD 90
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN) HSP 1 Score: 72.0 bits (175), Expect = 8.120e-13 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 10 VFQLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
+ QLA ++ + ++DR + R Y +CF G+EAV W++ A+ EA +GN MM+A +F H++ H FED ++Y+FTD
Sbjct: 24 LLQLAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTD 105
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A7S1TCV4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCV4_9RHOD) HSP 1 Score: 70.5 bits (171), Expect = 2.770e-12 Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 43 IAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
+ VRDR +LR +PSCF G EAVQW++D A++ +A +G+ M+ A VF H+L H F++ +++Y+F +
Sbjct: 23 VTVRDRKFKLRSFPSCFVGFEAVQWLVDHGFAANEEDAVRLGDSMIHAGVFHHVLREHSFKNENLFYRFAE 93
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A2W1JJX8_9CYAN (Mechanosensitive channel MscK n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JJX8_9CYAN) HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10 Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 19 LADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFT 252
LA +M+A + + DR +RL +YP CF G EAV W+++ A+ EA +G +M V H+L+ H F D+ ++Y+F+
Sbjct: 538 LATQMRAGLTIADRRYRLNLYPQCFVGSEAVDWLMETQKATKE-EAIRLGQALMSKGVIHHVLDKHPFADAYLFYRFS 614
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Match: A0A836BUS5_9CHLO (DEP domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BUS5_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 1.600e-10 Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 76 VYPSCFSGREAVQWMLDGCHASSVMEAENIGNEMMKASVFQHILNSHVFEDSSVYYQFTD 255
+Y +CF G+EAV W++ HASS +A +GN MM +F H++ HVFEDS ++Y+FT+
Sbjct: 1 MYKNCFVGQEAVAWLVQSGHASSPADAIRLGNLMMTHGLFHHVVYEHVFEDSYLFYRFTN 60 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60179.16635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig60179.16635.1 >prot_Ecto-sp13_S_contig60179.16635.1 ID=prot_Ecto-sp13_S_contig60179.16635.1|Name=mRNA_Ecto-sp13_S_contig60179.16635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp MRAVFQLADEMKAQIAVRDRVHRLRVYPSCFSGREAVQWMLDGCHASSVMback to top mRNA from alignment at Ecto-sp13_S_contig60179:523..777- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig60179.16635.1 ID=mRNA_Ecto-sp13_S_contig60179.16635.1|Name=mRNA_Ecto-sp13_S_contig60179.16635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60179:523..777- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60179:523..777- >mRNA_Ecto-sp13_S_contig60179.16635.1 ID=mRNA_Ecto-sp13_S_contig60179.16635.1|Name=mRNA_Ecto-sp13_S_contig60179.16635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60179:523..777- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |