mRNA_Ecto-sp13_S_contig60147.16631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60147.16631.1
Unique NamemRNA_Ecto-sp13_S_contig60147.16631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60147.16631.1 vs. uniprot
Match: D8LSS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 8.470e-137
Identity = 260/275 (94.55%), Postives = 264/275 (96.00%), Query Frame = 1 
Query:    1 EVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPSDGGGRDNRAGGDNSENDGSKIRAKGRKKWSSWRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACKRRESRSRPGQPAGSTPPPPISAGGSCRGDGGHRRGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSARHAVWPRTLKV 825
            EVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRP DGGGRDNR GGD+SENDGSK+RAKGRKKWS WRRQ  XXXXXXXXXXXXXXXXXXXXXXXXX  SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELAC+RRESRS PGQPAGSTPPPPI+AGGSCRGD GHRRGKRRENDPE VPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRS RHAVWPRTLKV
Sbjct:   52 EVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXXXXX-SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKV 325
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60147.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS6_ECTSI8.470e-13794.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60147contigEcto-sp13_S_contig60147:7..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size825
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-15_002780.2
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.328552-CDS-Ecto-sp13_S_contig60147:6..8311681463838.328552-CDS-Ecto-sp13_S_contig60147:6..831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60147 7..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60147.16631.1prot_Ecto-sp13_S_contig60147.16631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60147 7..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60147.16631.1

>prot_Ecto-sp13_S_contig60147.16631.1 ID=prot_Ecto-sp13_S_contig60147.16631.1|Name=mRNA_Ecto-sp13_S_contig60147.16631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
EVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPSDGGGRDNR
AGGDNSENDGSKIRAKGRKKWSSWRRQKRQKAGGAERNAGGSSNGGGGGG
GGGGAVSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLV
GLAWPPNLRKLTFGSSFNRELACKRRESRSRPGQPAGSTPPPPISAGGSC
RGDGGHRRGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGLLPSGLV
SLTLGRNFRQHRSARHAVWPRTLKV
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mRNA from alignment at Ecto-sp13_S_contig60147:7..831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60147.16631.1 ID=mRNA_Ecto-sp13_S_contig60147.16631.1|Name=mRNA_Ecto-sp13_S_contig60147.16631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60147:7..831- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGTGGTTGAGCTCCAGCGCGCCTCCCTCTTCTTCTGCGAGCTGTGCCG
AAGCTGCACCCCGGTGCGCGTGCGAGTCGACGCCCAGACCCCAAGGGCCA
TGTGGGCCCGGACGAGCAGACCCAGTGATGGCGGTGGCCGGGACAACCGT
GCCGGGGGAGACAACAGCGAAAACGACGGGAGTAAAATTAGGGCCAAAGG
GAGAAAAAAATGGAGCTCGTGGCGGCGGCAGAAGCGACAGAAGGCGGGCG
GGGCCGAGAGGAACGCCGGCGGTTCCAGCAACGGCGGCGGCGGTGGTGGT
GGTGGTGGTGGTGCTGTGTCGCGACTCCCACGCCTAAGCATAACAAGCCT
CGTGTGGGCGGCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTCCCT
TGGCGTTGAGAGAGCTGACCTTCGACCGAGGGTTCAACCGGCGCCTGGTT
GGACTCGCGTGGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAGCTT
CAATCGAGAGCTAGCCTGCAAGAGGAGGGAGAGTCGATCACGGCCCGGAC
AGCCAGCAGGGTCCACACCGCCTCCACCGATTTCCGCTGGCGGCAGCTGC
AGAGGTGATGGTGGTCACCGCAGGGGGAAGAGGAGGGAGAACGATCCGGA
GATCGTTCCTCTCCTCCCGGCAAGCCTCGAGGAGCTGACGCTCGGGAAGC
ACTTCAACAAGCCGCTACCACCGCGCGGGCTGCTGCCTTCCGGGCTGGTG
TCCCTGACGCTCGGGAGGAACTTTCGTCAGCACCGCAGCGCGCGCCACGC
GGTGTGGCCCCGGACCCTCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60147:7..831-

>mRNA_Ecto-sp13_S_contig60147.16631.1 ID=mRNA_Ecto-sp13_S_contig60147.16631.1|Name=mRNA_Ecto-sp13_S_contig60147.16631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60147:7..831- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGTGGTTGAGCTCCAGCGCGCCTCCCTCTTCTTCTGCGAGCTGTGCCG
AAGCTGCACCCCGGTGCGCGTGCGAGTCGACGCCCAGACCCCAAGGGCCA
TGTGGGCCCGGACGAGCAGACCCAGTGATGGCGGTGGCCGGGACAACCGT
GCCGGGGGAGACAACAGCGAAAACGACGGGAGTAAAATTAGGGCCAAAGG
GAGAAAAAAATGGAGCTCGTGGCGGCGGCAGAAGCGACAGAAGGCGGGCG
GGGCCGAGAGGAACGCCGGCGGTTCCAGCAACGGCGGCGGCGGTGGTGGT
GGTGGTGGTGGTGCTGTGTCGCGACTCCCACGCCTAAGCATAACAAGCCT
CGTGTGGGCGGCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTCCCT
TGGCGTTGAGAGAGCTGACCTTCGACCGAGGGTTCAACCGGCGCCTGGTT
GGACTCGCGTGGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAGCTT
CAATCGAGAGCTAGCCTGCAAGAGGAGGGAGAGTCGATCACGGCCCGGAC
AGCCAGCAGGGTCCACACCGCCTCCACCGATTTCCGCTGGCGGCAGCTGC
AGAGGTGATGGTGGTCACCGCAGGGGGAAGAGGAGGGAGAACGATCCGGA
GATCGTTCCTCTCCTCCCGGCAAGCCTCGAGGAGCTGACGCTCGGGAAGC
ACTTCAACAAGCCGCTACCACCGCGCGGGCTGCTGCCTTCCGGGCTGGTG
TCCCTGACGCTCGGGAGGAACTTTCGTCAGCACCGCAGCGCGCGCCACGC
GGTGTGGCCCCGGACCCTCAAGGTG
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