mRNA_Ecto-sp13_S_contig11950.1663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11950.1663.1
Unique NamemRNA_Ecto-sp13_S_contig11950.1663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11950.1663.1 vs. uniprot
Match: D7G289_ECTSI (zf-LYAR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G289_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.010e-49
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:  211 GEEAEGAGNGGGVDAATRKALAKAAVGAVKKAQDKRIAVKELVKKAAAAVLVARGTEGSSSGGSKEHQPDDLTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 516
            GEEAEGA NGGGVDAATRKALAKAA+GAVKKAQ KRIAVKELVK+AAAAVLVARGTEGSSSG SKEHQPDD TLRRALKQRLKTGGLRHVTVEGKVAVYSKG
Sbjct:  304 GEEAEGARNGGGVDAATRKALAKAAIGAVKKAQGKRIAVKELVKQAAAAVLVARGTEGSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11950.1663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G289_ECTSI5.010e-4994.12zf-LYAR domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11950contigEcto-sp13_S_contig11950:2..1616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score173.7
Seed ortholog evalue7.4e-41
Seed eggNOG ortholog2880.D7G289
Preferred nameLYAR
Model size559
KEGG koko:K14785,ko:K15263
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0001750,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005929,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030097,GO:0030099,GO:0030100,GO:0030154,GO:0030218,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0034101,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042592,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0045807,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060627,GO:0061515,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons3
EggNOG free text desc.erythrocyte development
EggNOG OGsKOG2186@1,KOG2186@2759
Ec32 ortholog descriptionZinc finger, C2H2, LYAR-type
Ec32 orthologEc-16_002050.1
Cds size519
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.1023862-CDS-Ecto-sp13_S_contig11950:1..531681462633.1023862-CDS-Ecto-sp13_S_contig11950:1..53Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 2..53 +
1681462633.1140187-CDS-Ecto-sp13_S_contig11950:565..8161681462633.1140187-CDS-Ecto-sp13_S_contig11950:565..816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 566..816 +
1681462633.1237588-CDS-Ecto-sp13_S_contig11950:1360..15761681462633.1237588-CDS-Ecto-sp13_S_contig11950:1360..1576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 1361..1576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.131719-UTR-Ecto-sp13_S_contig11950:1576..16161681462633.131719-UTR-Ecto-sp13_S_contig11950:1576..1616Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11950 1577..1616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11950.1663.1prot_Ecto-sp13_S_contig11950.1663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11950 2..1576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11950.1663.1

>prot_Ecto-sp13_S_contig11950.1663.1 ID=prot_Ecto-sp13_S_contig11950.1663.1|Name=mRNA_Ecto-sp13_S_contig11950.1663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
QEDTAATTEPARESSKKEKKSKKRAREEAADTGNGGTADGSDNGSGSGGG
EKRPRGPQPEVENQPQDAAVGEEAEGAGNGGGVDAATRKALAKAAVGAVK
KAQDKRIAVKELVKKAAAAVLVARGTEGSSSGGSKEHQPDDLTLRRALKQ
RLKTGGLRHVTVEGKVAVYSKG*
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mRNA from alignment at Ecto-sp13_S_contig11950:2..1616+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11950.1663.1 ID=mRNA_Ecto-sp13_S_contig11950.1663.1|Name=mRNA_Ecto-sp13_S_contig11950.1663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11950:2..1616+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGACACAGCCGCGACAACAGAACCCGCACGAGAATCGTCCAAGAA
AGGTATGTGTTGCTTGACAAGACAGCAACGGTTGTTGTACAAAAAGCGGG
CGGGCATAAACGATTGTATAGAGGAGAAGCAGGAGCAGACTCTGTAAGGC
ATTGTAGTGGGACGGGGATGGGGGTCACGGTTCACGTGAAAGCCTCCGGG
AAACTCGCAAGAATCTTGTGGTTTGACGTATAGTATGGAGAGAAGATGGC
GGTACGTATGAGGAACATGTAGCATGTCAATTTTTGATGTGAAGACTTTG
TTGGAAACACAGCATATTTCGACAACACCAATACCTTTTTTCGCCAGGAA
TTTTGGTATCGATCCCGCATAATCCACAACTCTCATGCCGATGGCACCCC
GCCCAATCTTCAAGCGTGCAATTATCACGGACCAGCCTTACGCCGCGCGT
ACGTGGTGCGAACTCGTGCCGACAACCTGTGTGCGTTTGCACCCAACCTC
CCTCCCCCCCTGCCTTCCTCCTGTTTCTCTTCCTGCACGCGCGACCGCAT
CACCATCGCGACAGAGAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCGG
CGGATACGGGGAACGGGGGGACTGCAGACGGCAGCGATAACGGTAGCGGT
AGCGGTGGCGGTGAAAAGAGACCGCGAGGCCCGCAGCCAGAAGTGGAGAA
TCAGCCGCAAGATGCAGCGGTCGGCGAAGAAGCGGAGGGTGCGGGAAACG
GTGGTGGGGTAGATGCGGCCACTCGCAAGGCGTTAGCCAAGGCGGCCGTC
GGCGCTGTGAAGAAGGTGGGCAGGGGGTGATGATGCCACACGAAGGGCAG
TCGGCTGTGCTCATATATTGGTATTTTGGCTCACATTGTGTTTCGATCTA
GCCGAGCGCCCAAAACTATCGCGTCATGTCACGAGACACACAGCGGGTGC
ATGACGGCAGCAGCAAAGCCACCCACAAACCTCAACACGCTCAGATAACC
AAGGCGCACGCCGTACACCTTACCATCGTGTCCCAAATCTTGGCTTGAGT
TCATCAATGTTTGTCCCCAACAGCCAGTTGGTCGGCAGCGAGGACATCGC
TACCGTGTTAAAAATCGTCACTATGTACTCTTCTCTGTAGCCAGTATTGA
CTGCTGGGTGGGTGTAAACGATGTCTCTGCACGTTGGTGGGTCAAGAACG
ACGGTTTGACAAACTGCGGGTGGCTTGAGTATTCTGAATAGTTGCGAACC
GATTGGCCAGCCTTCCTCCTGGTTGCCGTTTTTTTTCCCGCTTGGTGTCT
TCATGTTTTTTTATTCGCAACCCTCTCTACCTCAACTGTTCTGTATCAAA
TTCCACCAGGCGCAGGACAAGAGGATAGCGGTGAAGGAACTTGTCAAGAA
GGCGGCGGCGGCGGTGTTGGTGGCAAGAGGCACGGAGGGCAGCAGCAGCG
GCGGCAGCAAGGAGCACCAGCCGGACGACCTGACGCTGAGGCGTGCCCTG
AAGCAGCGGTTGAAGACCGGGGGGCTCCGCCATGTGACGGTGGAAGGGAA
GGTGGCCGTCTACTCCAAAGGATAGGGTTAGGCCCAATAGTTGTCGCCGT
TGTTTATAGTCTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11950:2..1616+

>mRNA_Ecto-sp13_S_contig11950.1663.1 ID=mRNA_Ecto-sp13_S_contig11950.1663.1|Name=mRNA_Ecto-sp13_S_contig11950.1663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11950:2..1616+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGACACAGCCGCGACAACAGAACCCGCACGAGAATCGTCCAAGAA
AGAGAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCGGCGGATACGGGGA
ACGGGGGGACTGCAGACGGCAGCGATAACGGTAGCGGTAGCGGTGGCGGT
GAAAAGAGACCGCGAGGCCCGCAGCCAGAAGTGGAGAATCAGCCGCAAGA
TGCAGCGGTCGGCGAAGAAGCGGAGGGTGCGGGAAACGGTGGTGGGGTAG
ATGCGGCCACTCGCAAGGCGTTAGCCAAGGCGGCCGTCGGCGCTGTGAAG
AAGGCGCAGGACAAGAGGATAGCGGTGAAGGAACTTGTCAAGAAGGCGGC
GGCGGCGGTGTTGGTGGCAAGAGGCACGGAGGGCAGCAGCAGCGGCGGCA
GCAAGGAGCACCAGCCGGACGACCTGACGCTGAGGCGTGCCCTGAAGCAG
CGGTTGAAGACCGGGGGGCTCCGCCATGTGACGGTGGAAGGGAAGGTGGC
CGTCTACTCCAAAGGATAG
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