mRNA_Ecto-sp13_S_contig60083.16615.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60083.16615.1
Unique NamemRNA_Ecto-sp13_S_contig60083.16615.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 6.300e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            MEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW
Sbjct:  501 MEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 601
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: A0A835Z4N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.140e-22
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRT-KPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E EYW +VD G     VEY ND++++ FWSGFP PP   M  ++ +   +  DF   +YY   GWNL NLPFW GSVLR+FR  I G+  PW
Sbjct:  346 MELEYWRMVDVGEPRATVEYGNDIDVNEFWSGFPAPPPQHMVAAAGEWAGRALDFAHKDYYAKSGWNLCNLPFWRGSVLRWFRHKITGVNVPW 438
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: W2QF68_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QF68_PHYPN)

HSP 1 Score: 97.1 bits (240), Expect = 2.460e-21
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +EREYW V+  G   +EVEYANDL+IS   SGF    K F    S    +  DF DPEYYR  GWNLNNLP   GS+LR     ING+  PW
Sbjct:  217 IEREYWRVIQTGEPNVEVEYANDLDISQVGSGFLRSKKRFA-SQSMKGKESIDFSDPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGINVPW 307
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: A0A329SG71_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SG71_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.290e-21
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E+EYW V+  G   +EVEYANDL+IS   SGF    K F    +    +P DF DPEYYR  GWNLNNLP   GS+LR     ING+  PW
Sbjct:  145 IEQEYWRVIQTGEPNVEVEYANDLDISQVGSGFLRSKKRFA-SRTMKGKQPIDFADPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGINVPW 235
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: T0QVD8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QVD8_SAPDV)

HSP 1 Score: 95.5 bits (236), Expect = 8.300e-21
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    1 MEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            M+ N   R +ER YW +V    E  EVEYAN+++I    SGFP PP +         ++  DF DP YY T  WNLNNLPF  GS+LR+    I GL  PW
Sbjct:  187 MDANATSRDIERAYWKLVLAPSEATEVEYANNVSIKDLGSGFPTPPTHAKASLQAKASEDVDFADPTYYATTAWNLNNLPFAAGSLLRYVDASIEGLNVPW 287
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: W7UAB4_9STRA (Lysine-specific demethylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAB4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 8.760e-21
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFM---DGSSFDR----TKPCDFDD-------PEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            LER+YW +++   E ++VEY NDL+  T+ SGFP      M   +GS+ DR    T   D +        PEYY  CGWN+NNLP WPGSVLR+ R  + G+  PW
Sbjct:  303 LERDYWRIIEAAEEVVDVEYGNDLDTLTYGSGFPRATDLMMPRSEGSTEDRFAIETIGKDREGRGRLLGTPEYYERCGWNMNNLPLWPGSVLRYIRAPLKGVNVPW 408
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: A0A5D6YER2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YER2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.800e-19
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E++YW +V+ GV  +EVEYANDL+ +   SGF    + F        T   DFDDP YY T  WNLNNLP   GS+LR   + ING+  PW
Sbjct:  268 IEQDYWRIVETGVPNVEVEYANDLDTTKVGSGFVRAKEQFAARPKGKET--VDFDDPAYYATTAWNLNNLPDAHGSLLRHVHSSINGINVPW 357
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: D0MS65_PHYIT (Histone demethylase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS65_PHYIT)

HSP 1 Score: 89.7 bits (221), Expect = 9.170e-19
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E+EYW ++  G   ++VEYANDL+IS   SGF    K +   ++    +  DF DPEYYR  GWNLNNLP   GS+LR     ING+  PW
Sbjct:  212 IEQEYWRIIQTGEPSVQVEYANDLDISQVGSGFLRSKKRYASQATKGE-EAIDFADPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGVNVPW 302
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BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: A0A8K1CC57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC57_PYTOL)

HSP 1 Score: 88.2 bits (217), Expect = 3.210e-18
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E+EYW +V+ G   ++VEYANDL+ +   SGFP     F   +    +   DF DP+YY    WNLNNLPF  GS+LR   T ING+  PW
Sbjct:  230 IEQEYWRIVETGGPAVQVEYANDLDTTQVGSGFPRATNPFAAVAKGKES--VDFFDPKYYEHTAWNLNNLPFAHGSLLRHMHTAINGINVPW 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Match: A0A2D4CGC1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGC1_PYTIN)

HSP 1 Score: 87.0 bits (214), Expect = 7.100e-18
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   28 LEREYWNVVDGGVEELEVEYANDLNISTFWSGFPM--PPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPW 303
            +E+EYW +V+ G   ++VEYANDL+     SGF     P + +      +T+  DF DPEYYR   WNLNNLPF  GS+LR  +  I G+  PW
Sbjct:  144 IEQEYWRIVETGAPVMQVEYANDLDTMVVGSGFHRVDDPASIVGA----KTEDVDFKDPEYYRHTAWNLNNLPFAHGSLLRHVKGEIRGINVPW 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60083.16615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFA3_ECTSI6.300e-68100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4N8_9STRA1.140e-2248.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W2QF68_PHYPN2.460e-2152.17Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A329SG71_9STRA4.290e-2151.09Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
T0QVD8_SAPDV8.300e-2145.54Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W7UAB4_9STRA8.760e-2144.34Lysine-specific demethylase n=2 Tax=Monodopsidacea... [more]
A0A5D6YER2_9STRA6.800e-1946.74Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D0MS65_PHYIT9.170e-1946.74Histone demethylase, putative n=2 Tax=Phytophthora... [more]
A0A8K1CC57_PYTOL3.210e-1845.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CGC1_PYTIN7.100e-1844.68Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60083contigEcto-sp13_S_contig60083:213..801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score229.2
Seed ortholog evalue8.8e-58
Seed eggNOG ortholog2880.D8LFA3
Model size306
KEGG koko:K11446
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Cds size306
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.966302-CDS-Ecto-sp13_S_contig60083:212..2901681463836.966302-CDS-Ecto-sp13_S_contig60083:212..290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60083 213..290 +
1681463836.9790974-CDS-Ecto-sp13_S_contig60083:573..8011681463836.9790974-CDS-Ecto-sp13_S_contig60083:573..801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60083 574..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60083.16615.1prot_Ecto-sp13_S_contig60083.16615.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60083 213..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60083.16615.1

>prot_Ecto-sp13_S_contig60083.16615.1 ID=prot_Ecto-sp13_S_contig60083.16615.1|Name=mRNA_Ecto-sp13_S_contig60083.16615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFM
DGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAP
W*
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mRNA from alignment at Ecto-sp13_S_contig60083:213..801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60083.16615.1 ID=mRNA_Ecto-sp13_S_contig60083.16615.1|Name=mRNA_Ecto-sp13_S_contig60083.16615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=589bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60083:213..801+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAAACGGGAAGCTTCGGTTACTGGAGAGAGAGTACTGGAACGT
CGTGGATGGAGGGGTGGAAGAGCTTGAGGTGTGTGTGCGTGTGCCAGCAT
AGAGGGGGGCTAGCGGCGGCACAGATATTGCTGTTTCGGAGCGAACGGTT
GGCGCTTGTGCGTGTGTTGTGCGTCAGCACGATAGCAAAGACCGAGCGCA
CACCAGTCACGTCGTTGTGTTACATTACGGGGCCTGCTTCACACACACTA
AGAACTACTGGATACAACCATTACCACAGGGGAAAGCTCGGCACTTCTTG
ACCCCCGCCCCAAACAACTCTCAACTCCCAACTTCACCACCAACACCAAC
ATCCCAAACAGGTGGAGTACGCGAACGACCTCAACATCTCGACCTTCTGG
AGCGGGTTCCCCATGCCGCCCAAAAACTTCATGGACGGCTCCTCGTTTGA
CCGCACCAAGCCGTGCGATTTCGACGACCCTGAGTACTACCGCACCTGCG
GCTGGAACCTGAACAACCTGCCCTTCTGGCCGGGGTCGGTCCTCCGCTTC
TTCCGGACGCACATCAATGGTCTCACCGCTCCCTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60083:213..801+

>mRNA_Ecto-sp13_S_contig60083.16615.1 ID=mRNA_Ecto-sp13_S_contig60083.16615.1|Name=mRNA_Ecto-sp13_S_contig60083.16615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60083:213..801+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAAACGGGAAGCTTCGGTTACTGGAGAGAGAGTACTGGAACGT
CGTGGATGGAGGGGTGGAAGAGCTTGAGGTGGAGTACGCGAACGACCTCA
ACATCTCGACCTTCTGGAGCGGGTTCCCCATGCCGCCCAAAAACTTCATG
GACGGCTCCTCGTTTGACCGCACCAAGCCGTGCGATTTCGACGACCCTGA
GTACTACCGCACCTGCGGCTGGAACCTGAACAACCTGCCCTTCTGGCCGG
GGTCGGTCCTCCGCTTCTTCCGGACGCACATCAATGGTCTCACCGCTCCC
TGGTAA
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