mRNA_Ecto-sp13_S_contig60.16590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: D8LL26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26_ECTSI) HSP 1 Score: 706 bits (1823), Expect = 7.230e-250 Identity = 358/374 (95.72%), Postives = 362/374 (96.79%), Query Frame = 3
Query: 795 DLNEVGGLQLESPPDATGIAFPAGTYEFGAEDFRFDPGREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESKEALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGYSLYLSGNRLGGAANVNFMPFFLPTFRAASSRDSDGVKEPGAEQHEQGVDDAAAPVLEDAEIREAVPSEVVVGVTPDGCGAESNATEAGQQREGTVLQPISA 1916
DLNEVGGLQLESPPD TGIAFPAGTYEFGAEDFRFD GREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWES+EALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGY+LYLSGNRLGGAA VNFMPFFLPTFRAA+SRDS GVK+PGAEQ EQGVDD AAPV EDA REAVPSEV VGVTPDGCGAESNATEA QQREG VLQPISA
Sbjct: 6 DLNEVGGLQLESPPDTTGIAFPAGTYEFGAEDFRFDLGREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESREALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGYALYLSGNRLGGAAYVNFMPFFLPTFRAATSRDSSGVKDPGAEQREQGVDDVAAPVQEDAGTREAVPSEVFVGVTPDGCGAESNATEAEQQREGAVLQPISA 379
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: A0A6H5KR13_9PHAE (Peroxin/Ferlin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR13_9PHAE) HSP 1 Score: 318 bits (814), Expect = 9.100e-101 Identity = 164/189 (86.77%), Postives = 166/189 (87.83%), Query Frame = 3
Query: 78 MTACKALLFRSALVAILVHAVGGNEFRTALSNDGYTAASGTAAGRTPALEEEEA-APVMLAYSRAVAADRSRRFEAEADVNTGPDPFFADLEFEVARQDDKEIREPP-KKLLLHKVEVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSNSLMKFNAFR 638
MTACKALLFRSALVAILVHAVGGNEFRTAL NDGYTAAS APVMLA SRAVAADR RFEAEADV TGPDPFFADLEF+VARQDDKEIREPP KKLLLHKVEVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYS SLMKFN+FR
Sbjct: 1 MTACKALLFRSALVAILVHAVGGNEFRTALRNDGYTAASAXXXXXXXXXXXXXXXAPVMLASSRAVAADRRSRFEAEADVKTGPDPFFADLEFDVARQDDKEIREPPPKKLLLHKVEVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSKSLMKFNSFR 189
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: A0A835Z8S6_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S6_9STRA) HSP 1 Score: 158 bits (399), Expect = 3.370e-37 Identity = 148/484 (30.58%), Postives = 212/484 (43.80%), Query Frame = 3
Query: 351 FEVARQDDKEIREPPKKL------------LLHKVEVYEVESGGL-GRRWRQSRTG-WTYKDGSSALPPRQVLCPDEWTWASEWKID--GSGGRDEAGW---EYSNSLMKFNAFRVPRGRRLADRF-RRRRWVRAMQCVRPQREQRQEARWIRSSR-HP-GMRACNKQRRDLNEVGGLQLESPPDATGIAFPAGTYE----FGAEDFRFDPGREDVDLFPAP-----------------DIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLR---PDLGVGVRLPVTLHFRSWESKEALPSVALSLFVLWPPAVQVSQAMSYPAELLQELA--------------TTAAR---KIVVP--------SKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAA 1589
F+ A Q D + PPK ++ VEVYE + G G Q W+Y DG+ A PP +V PD W W +W +D + DEAGW + +S +K + +G + + RRRRWVR M+ +R R I++ + HP G A ++ ATG A AG AE+ R + P + R R + LG+AL WW EF FRGFG+G VKP+F G +LR D+GVG+R+P+T HF WE++ LP ++ SLF WP VQ S MS + LQ+ A T R KI + +K+ +Q R+ V R+GV++ VR S+ YG Q W SPY FLLPGVR++ S + L+L + R A+ ++ + + A A+ WA+
Sbjct: 55 FDDAPQPDFAVYRPPKPTAQEEKERAAADAVVADVEVYENQVWGADGEEGGQHVLHRWSYSDGTPATPPSEVQLPDMWLWEGDWSVDCDHTPTCDEAGWHDLDDDSSTVK----ELTKGENIKSVYTRRRRWVRTMR-LRSGASTDSSLRGIKALKEHPRGRAAAAATALHHAAAANTSTDTTVQATGDAARAGVARPVQPADAEEGRRKRRASGIATVAVPANVTXXXXXXXXXXXGDXXXXXXAERKRLARRQRPLGSALAQ---WWEREFVFRGFGVGLVKPLFAGYMLRGNLSDMGVGLRMPITSHFNCWEARRDLPLISSSLFFFWPLKVQTSFTMSVASAQLQDWAGGVKGLWLALADSFTAEGRRRAKIWLSGSGEGGAFAKKPVQ---RRTTVTRVGVTVSVRLSAEYGLQVWASPYIFLLPGVRIITDALSSALALILGT-----RDTAAAVEARRAQEAARLASATYAVALWAS 522
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: A0A6P8R6E9_GEOSA (fer-1-like protein 5 isoform X6 n=8 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8R6E9_GEOSA) HSP 1 Score: 60.1 bits (144), Expect = 1.950e-5 Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 3
Query: 387 EPPKKLLLHK--------VEVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSNSLMKFNAFRVPRGRRLADR----FRRRRWVR 692
EP K+LLL +VYE E G W + T +DG++ ++LCP +W + +WK++ + D+AGWEYS L K + + + A++ RRRRWVR
Sbjct: 904 EPQKRLLLDGDTNYSEILEQVYENEIREPGEEWVPAEVPNTTEDGTACYEKEEILCPPDWFYRDDWKVELNRAVDDAGWEYSVGLDKSS---ISKSWHSAEKTYHTHRRRRWVR 1014
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: UPI00112BEB79 (fer-1-like protein 5 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112BEB79) HSP 1 Score: 58.9 bits (141), Expect = 4.500e-5 Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 3
Query: 363 RQDDKEIREPPKKLLL-----HKV---EVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSNSLMKFNAFRVPRGRRLADR----FRRRRW 686
R D + EP K+LLL H +VYE E G W + T DG++ +LCP +W + +WK++ + DEAGWEY + F+ PR +++ +RRRRW
Sbjct: 864 RWDGDWVVEPQKRLLLDGDTNHSEVLEQVYENEIREPGEEWGPAPVPHTNADGTACPQKEAILCPPDWYYRDDWKVEVNRAVDEAGWEYG---VGFDPSTAPRSWHTSEKTYHTYRRRRW 980
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Match: A0A6G0XJ19_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ19_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 5.870e-5 Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 3
Query: 459 WRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGS-GGRDEAGWEYSNSLMKFNAFRVPRG----RRLADRFRRRRWVRAM 698
W R ++ + G + V+CP WTW SEWK+D DE GW Y+ +F + + +G R++ + RRRRWVR M
Sbjct: 633 WPTDRPRFSNRQGDKEMNFNDVVCPPNWTWTSEWKVDMKYTDCDEEGWSYATDFPRFK-YHLAKGKSNPRKVGNSVRRRRWVRTM 716 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60.16590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig60.16590.1 >prot_Ecto-sp13_S_contig60.16590.1 ID=prot_Ecto-sp13_S_contig60.16590.1|Name=mRNA_Ecto-sp13_S_contig60.16590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=614bp MTACKALLFRSALVAILVHAVGGNEFRTALSNDGYTAASGTAAGRTPALEback to top mRNA from alignment at Ecto-sp13_S_contig60:29931..34538- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig60.16590.1 ID=mRNA_Ecto-sp13_S_contig60.16590.1|Name=mRNA_Ecto-sp13_S_contig60.16590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:29931..34538- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60:29931..34538- >mRNA_Ecto-sp13_S_contig60.16590.1 ID=mRNA_Ecto-sp13_S_contig60.16590.1|Name=mRNA_Ecto-sp13_S_contig60.16590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:29931..34538- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |