mRNA_Ecto-sp13_S_contig60.16586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI) HSP 1 Score: 782 bits (2019), Expect = 7.160e-273 Identity = 416/506 (82.21%), Postives = 420/506 (83.00%), Query Frame = 1
Query: 1 MVETALSSATAAPRGFHQGTSHNNINC-TNKSKMRIEGPPSRRDKHQHGLGRAGRCPRWRHCPSSSRGATLPAGGGGAFWFASPTGGATVAAVLVATLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPSRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRXXXXXLGNQSDPAGTXXXXXGRASGTADATTERGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFFASVACGVIAAKLSLRD 1515
MVET+LSSATAAPRGFHQ TSH NIN TNK+KMRIE P SRRDKHQHGLGRAGRCPRWRH PS SRGATLPA GGGA WFA PT GAT AAVLV TLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLP RQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRR LGNQSDPAGT GRASGT DATT + DDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFF ASVACGVIAAKLSLR+
Sbjct: 1 MVETSLSSATAAPRGFHQHTSHYNINRRTNKAKMRIEEPASRRDKHQHGLGRAGRCPRWRHRPSGSRGATLPATGGGAVWFAWPTAGATAAAVLVTTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTVDATTGQAS-----------------------------SLGNGTGSAASEDNSSSNDNGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 477
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A4D9CZZ7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.480e-39 Identity = 128/418 (30.62%), Postives = 179/418 (42.82%), Query Frame = 1
Query: 280 VATLLSCLCPAAIGL----VIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPSRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRXXXXX---LGNQSDPAGTXXXXXGRASGTADATT-----------------------ERGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1359
VATL A++GL V+++P + HV AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S P +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R+ N D A T+ +R CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 5 VATLYVAGVVASLGLGRALVVDQPCCSKHLHVPAAFGPNILGLESPLHARQLVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPLTGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: W7TBK1_9STRA (Protease-associated RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA) HSP 1 Score: 155 bits (392), Expect = 7.580e-36 Identity = 117/385 (30.39%), Postives = 163/385 (42.34%), Query Frame = 1
Query: 367 AAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPSRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRXXXXX---LGNQSDPAGTXXXXXGRASGTADATT-----------------------ERGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1359
AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S P +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R+ N D + A T+ +R CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 10 AAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A7S2RLQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.960e-26 Identity = 114/396 (28.79%), Postives = 162/396 (40.91%), Query Frame = 1
Query: 292 LSCLCPAAIGLVIE-EPFQAT--FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGC-----------VPLHN-AMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS-----------NRSW--LPSRQGRL-------RASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRXXXXXLGNQSDPAGTXXXXXGR-ASGTADATTERGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKG 1368
LS L GLV+E P A F HV AAFG V + LV A+P+ GC P+ +++G L++RG CNFT KV+ AQ GA+A ++ D P D+W + M + + IP++ VS+ TG+RLW + W L S G R SV A G+++++ + V LE IY+++S+ LL S L ALG WY + R RA+ L F + DP+ T S +A + +E+ D C+ICL+ Y G++L LPC H FH +CI PWL +S CP+CK A G
Sbjct: 51 LSGLTGCCEGLVLELSPGAAVEQFSHVPAAFG-----LHHDVTNLRLVPAEPKHGCECASGECLGRPAPVSPFGLEDGFALLIQRGQCNFTDKVIWAQHRGAAAAIICDDQPRDDRWEVTMSSQDQTPVPVSIPSIFVSYRTGQRLWQAAQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQLVRPLETFIIYVVVSLALLTLSACLWLSLALGLAWYTQLQRRRALMALHRFKY-------------DPSTTVAPPATPYTSPSASSHSEK---------------------------------------------------RSPVLCRDTTCSICLDDYASGETLRALPCGHVFHDRCITPWLERRSVDCPLCKQPALPAG 377
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A1V9Y6L8_9STRA (PA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6L8_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 3.640e-18 Identity = 68/192 (35.42%), Postives = 102/192 (53.12%), Query Frame = 1
Query: 274 VLVATLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT---PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPSRQGRLRASVGAAGHIVMAARPVG----ALEMLGIYLLLSVLLLA 828
++V +LL+ LC A LVIE P A H+ A FG V +++ + A P C PL N + G IALV+RG CNF+ KVL+AQ A A AV+V D + W + M D N+ + IP+V VSH +G+RL + + S L ++ + G I+ A P +LE +Y +L+++ +A
Sbjct: 5 LVVLSLLTILCSA---LVIERPCCAKLRHIHARFGRRVTNSDEYTRLE-VATAVPIQSCAPLRNDL-HGKIALVKRGGCNFSYKVLNAQRAHAKAVIVYDDYPRQRNESWAIRMVPDHTNSSSVFIPSVFVSHESGDRLLATIDIMASVNETLLVTLNSTGEILPLATPAAVYQESLETSLMYFVLAIVCIA 191
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A836CGU0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.570e-12 Identity = 62/165 (37.58%), Postives = 73/165 (44.24%), Query Frame = 1
Query: 334 EPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTP-----------------ATDKWLMVMYGDPENTQGIDIPAVLVSHATG---ERLWSNRSWLPSRQG--RLRASVGAAGHIVM 759
+P HV AAFG DV V+ L+ A P D C PL NA G +ALV RG CNFT+KVL AQ GA AV+V DT W ++M G T I IPAV VS T L + L R R A+ AA H V+
Sbjct: 15 DPAYELHWHVPAAFGSDVR-----VDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVL 174
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A452HTM1_9SAUR (RING-type E3 ubiquitin transferase n=1 Tax=Gopherus agassizii TaxID=38772 RepID=A0A452HTM1_9SAUR) HSP 1 Score: 77.4 bits (189), Expect = 3.190e-11 Identity = 108/320 (33.75%), Postives = 141/320 (44.06%), Query Frame = 1
Query: 421 LVRAKPRDGCVPLHNAMDEGA----IALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPSRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFT-----WYQRGYRTRAMRKLKSFTFRRRXXXXXLGNQSDPAGTXXXXXGRASGTADATTERGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSE 1353
LV AKP + C P+ D IAL+ R CNF KV HAQ AG A +V +T +D+ L + + D + I IP+V V + L RS +G HI++ + LG YL+ F+GV G++ A+ T Q R R R K + GN P G +A+ XXXXXXXXXXXXXXXXXXXXXXXXX D+CAICL+ YE+GD L LPC H++H +C+ PWL+ CP+CK
Sbjct: 23 LVEAKPSNACQPIEGPPDSSNVTQFIALIRRYECNFDIKVWHAQQAGFDAAIVHNT-GSDELLKMAWNDERIREQIAIPSVFVGETASDYL---RSLFSYEKG---------AHIILIPEYM---FPLGYYLI------PFTGVVGIIIAVMCTILIVRCVQHRKRLRRNRLSKEQLKKIPVHKYKKGNWP-PGGAATSHSPQAA----------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXDEYDVCAICLDEYEEGDRLRILPCAHAYHCRCVDPWLTRTKKTCPVCKQR 279
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A7S3R701_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R701_DUNTE) HSP 1 Score: 70.1 bits (170), Expect = 1.110e-10 Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1213 DLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGK 1365
+ CA+C++ YE G+++ LPC+H+FH QC+R WLS S LCP+CK+ G+
Sbjct: 63 ETCAVCIQEYEPGEAIMHLPCKHAFHDQCVRSWLSTYSKLCPVCKASVTGE 113
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: F0W270_9STRA (T-complex protein 1 subunit alpha n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W270_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.900e-10 Identity = 48/133 (36.09%), Postives = 63/133 (47.37%), Query Frame = 1
Query: 322 LVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-------------EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERL 681
LV+ P T H+ F D L P ++ LV P C PL N IAL++RG CNF KV+HAQ AGA AVV+ D+ ++M D EN + IPAV +S+ GE+L
Sbjct: 823 LVLNSPCCQTITHLTGEFTSDKLLESNPFDNYELVAVNPLIACQPLTNGYHTKNYTSNTSALFLRNKIALIQRGECNFVTKVIHAQEAGAKAVVMMDSQIRATDYIIMQRD-ENASKVHIPAVFISYKDGEKL 954
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Match: A0A7X5QVG8_9GAMM (Serine protease n=4 Tax=Luteibacter TaxID=242605 RepID=A0A7X5QVG8_9GAMM) HSP 1 Score: 75.5 bits (184), Expect = 3.920e-10 Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 352 FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPSR--QGRLRASVGAAGHIVMA 762
+++ AAFGP SA + + R P DGC L NA + G +AL++RGTC+FT K L+AQ AGASAV++ + PA + G P + ++IP +LVS A G L +N S L QG + A G ++ A
Sbjct: 261 YEYAQAAFGPVATSAN---FAGSVARGVPNDGCAALTNAAEVAGKVALIDRGTCDFTVKALNAQAAGASAVLLANNQPAA----VTPGGTPASP--VNIPVILVSQADGNTLKANLSGLTGAVAQGTGLSGTNADGVLIYA 392 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60.16586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig60.16586.1 >prot_Ecto-sp13_S_contig60.16586.1 ID=prot_Ecto-sp13_S_contig60.16586.1|Name=mRNA_Ecto-sp13_S_contig60.16586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=506bp MVETALSSATAAPRGFHQGTSHNNINCTNKSKMRIEGPPSRRDKHQHGLGback to top mRNA from alignment at Ecto-sp13_S_contig60:3523..12373- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig60.16586.1 ID=mRNA_Ecto-sp13_S_contig60.16586.1|Name=mRNA_Ecto-sp13_S_contig60.16586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:3523..12373- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60:3523..12373- >mRNA_Ecto-sp13_S_contig60.16586.1 ID=mRNA_Ecto-sp13_S_contig60.16586.1|Name=mRNA_Ecto-sp13_S_contig60.16586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:3523..12373- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |