mRNA_Ecto-sp13_S_contig5981.16555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI) HSP 1 Score: 206 bits (524), Expect = 4.560e-62 Identity = 107/144 (74.31%), Postives = 118/144 (81.94%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
LGVCNNSDG+I IELD RE + S GYSVVTLRY P+R+ VYIKSAD AGL LDGL RGV+A APVE+ F+IVGI KRKFT +RRQ+PLTAGCLSSVYRSQGQTM IILDIR PPG+ +D AAVYVALSRAT L DL LL
Sbjct: 148 LGVCNNSDGIIRGIELDPREGY-ASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 290
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 206 bits (524), Expect = 7.480e-59 Identity = 107/144 (74.31%), Postives = 118/144 (81.94%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
LGVCNNSDG+I IELD RE + S GYSVVTLRY P+R+ VYIKSAD AGL LDGL RGV+A APVE+ F+IVGI KRKFT +RRQ+PLTAGCLSSVYRSQGQTM IILDIR PPG+ +D AAVYVALSRAT L DL LL
Sbjct: 1855 LGVCNNSDGIIRGIELDPREGY-ASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 1997
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE) HSP 1 Score: 169 bits (427), Expect = 4.480e-46 Identity = 84/123 (68.29%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRM 369
LGVCNNSDG+I IELD E+ L+ PGYSVV LRY P++V VYIK+AD+AGL L+GL RGVVA APVEK +I GIGK KF +RRQLPL AGC+SSV+RSQGQTM IILDI PPG M
Sbjct: 627 LGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPPPGTAM 749
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE) HSP 1 Score: 154 bits (390), Expect = 8.120e-41 Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
LGVC+N DG++ +IELD RE+ + + GY VV L++ PVRV V+I+S D++GL+L G PRGVVAF P+E+ + G R FTI+RRQLPLT+GCLSSV +ILD+R PPG R+DPA++YVA SRA L D YLL
Sbjct: 1342 LGVCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGKNGRNFTIKRRQLPLTSGCLSSVR---------VILDLRKPPGPRVDPASLYVARSRAKSLNDTYLL 1475
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5L437_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L437_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.490e-39 Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVY 303
LGVCNNSDG++ +IEL RE+ + N GY VV L+YPPVRV V+I+SAD+AGL+L GLPRGVVAF PVE+ F + G RKFTI+RRQLPLT+GCLSSVY
Sbjct: 51 LGVCNNSDGIVRAIELYQREQ-VQNHNDGYRVVHLKYPPVRVFVHIESADDAGLKLPGLPRGVVAFGPVERNFVLTGNNGRKFTIKRRQLPLTSGCLSSVY 150
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.080e-35 Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMR 327
LGVCNNSDG+I IELD RE+ L+ PGYSVV LRY P+RV VYIK+AD+AGL L+GL RGVVA APVEK F+I GIGKRKF +RRQLP G ++ ++R +T++
Sbjct: 2093 LGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNLRYAPLRVFVYIKTADDAGLHLEGLDRGVVAIAPVEKEFTIEGIGKRKFIFKRRQLPDILGIINYLHRLGKETLK 2201
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.200e-34 Identity = 71/101 (70.30%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVY 303
LGVCNNSDGVI SIELD REE+ V SNPG+SVV LRY PVR LDGLPRGVVAFAPVEKPFS+VG+GKRKFTI+RRQL TAG SVY
Sbjct: 64 LGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRYTPVR--------------LDGLPRGVVAFAPVEKPFSVVGVGKRKFTIQRRQLLPTAG---SVY 147
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 120 bits (302), Expect = 5.800e-29 Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIG-KRKFTIRRRQLPLTAGCLSSV-------------YRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
LGVCNNSDG+I IE+ REE V VYI++A +AGL+L L RGV + PVE+ FSIV KRKFT R+Q+PLTAGCLS++ S ++R IILD++ PP +DPA+ Y+ALSRAT LEDLYLL
Sbjct: 1739 LGVCNNSDGIIRGIEITQREE--------------------VFVYIQTAYDAGLKLPDLCRGVTSVGPVERNFSIVITKTKRKFTFSRKQVPLTAGCLSALGSDYIASSCLYHPILSHCVSLRRIILDLQKPPQPLVDPASSYLALSRATYLEDLYLL 1876
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.190e-22 Identity = 62/165 (37.58%), Postives = 87/165 (52.73%), Query Frame = 1
Query: 10 CNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQ----------------------------GQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLED 420
+ I SI+LD RE + GY VV L +PPVRV+++I++A +AGL L L RG VA + F + G+ +K++ +R QLPL G LSSVYR+Q G+T++T++L + P MDP+A YVALSRAT E
Sbjct: 1030 ATSEKATIVSIDLDPREAIVDGEPEGYRVVHLVHPPVRVVIFIQTAYDAGLHLPSLNRGEVAVGVESRSFDVRGLHDKKYSFKRGQLPLLPGHLSSVYRAQHFIHAYMHTSVLPQLVSFCLSSCYLSSKGETIKTLLLHMTKPVDGVMDPSAAYVALSRATSFES 1194
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A409WW68_PSICY (ATP-dependent DNA helicase n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409WW68_PSICY) HSP 1 Score: 92.8 bits (229), Expect = 3.880e-19 Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 7 VCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFT--IRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
+ N + G+IH I LD RE G L+YPP +L K LQ DG+ G++ P E FS+ GK+K T I+RRQ +TAG + Y+SQGQT+ +I+D+ PP + P VYVA+SR+ + + LL
Sbjct: 1802 IANGTRGIIHDIILDEREWTHPTITDG--TAKLKYPPAMIL--FKPNKRTELQFDGVEPGLIPLTPSEATFSVKTKGKKKKTMLIKRRQYGITAGYAFTDYKSQGQTIEYVIIDLAKPPTGSLSPFGVYVAMSRSRGRDTIRLL 1941 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5981.16555.1 >prot_Ecto-sp13_S_contig5981.16555.1 ID=prot_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADback to top mRNA from alignment at Ecto-sp13_S_contig5981:1065..1496- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5981.16555.1 ID=mRNA_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5981:1065..1496- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5981:1065..1496- >mRNA_Ecto-sp13_S_contig5981.16555.1 ID=mRNA_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5981:1065..1496- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |