mRNA_Ecto-sp13_S_contig59765.16549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59765.16549.1
Unique NamemRNA_Ecto-sp13_S_contig59765.16549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59765.16549.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 2.400e-124
Identity = 206/274 (75.18%), Postives = 209/274 (76.28%), Query Frame = 1 
Query:    1 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERSSEEAKQTRREIRRAAGG---------------------------------------------VSSPPPLAQAKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASPGQCSAIIDQGMESLEESTT---------------SATTWLADDCLAPLLGRLTERVSGMSGLPSAFMENWQVLVYQ 642
            LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRG+AGAAIRGSMLPPAVAARLER SEEAKQTRREIRRAAGG                                             VSSPPPLAQAKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASP QCSAIIDQGMESLEESTT               SATTWLADDCLAPLLGRLTERVSGMSG+PSAFME WQV  Y+
Sbjct:  177 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGVAGAAIRGSMLPPAVAARLERRSEEAKQTRREIRRAAGGSSWEEGDEGGELNMTDLWAALQFRGGATPGSSGGGDGWSGEISDSVSSPPPLAQAKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASPDQCSAIIDQGMESLEESTTWGGAGAQTESDVLRRSATTWLADDCLAPLLGRLTERVSGMSGVPSAFMEKWQVARYR 450
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BLAST of mRNA_Ecto-sp13_S_contig59765.16549.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 2.100e-119
Identity = 204/274 (74.45%), Postives = 207/274 (75.55%), Query Frame = 1 
Query:    1 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERSSEEAKQTRREIR----------------------------------RAAGG-----------VSSPPPLAQAKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASPGQCSAIIDQGMESLEESTT---------------SATTWLADDCLAPLLGRLTERVSGMSGLPSAFMENWQVLVYQ 642
            LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLER SEEAKQTRREI                                    ++GG           VSSPPPLAQ KTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASPGQCSAIIDQGMESLEESTT               SATTWLADDCLAPLLGRLTERVSGMSGLPSAFME WQV  Y+
Sbjct:  326 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERRSEEAKQTRREIXXXXXXXXXEEGDEAGELNMTDLWAALQFRGGATPESSGGGDGWGGEISDSVSSPPPLAQTKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGFASPGQCSAIIDQGMESLEESTTWGGAGAQTESDALRRSATTWLADDCLAPLLGRLTERVSGMSGLPSAFMEKWQVARYR 599
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BLAST of mRNA_Ecto-sp13_S_contig59765.16549.1 vs. uniprot
Match: F0YH17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH17_AURAN)

HSP 1 Score: 103 bits (256), Expect = 9.680e-22
Identity = 80/214 (37.38%), Postives = 106/214 (49.53%), Query Frame = 1 
Query:    1 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERSSEEAKQTRREIRRAAGGVSSPPPLAQAKTTDQIRECFEPYARDGVA-VLSVDPLLVRLRGFASPGQCSAIIDQGMESLEESTTSATTWLADDCLAPLLGRLTERVSGMSGLPSAFMENWQVLVY 639
            LE+  PS   WVRPEA+      +DV+ + GE L++   G ++A VHRV+   G    RVSTPLL+RG    A+ G        A  ER  + A +    IR A   V     +A  +T  +  E F   A  G A VLS DPL+V L GFAS   C+A++         +  S T WL DD  AP  G L  R + ++ LP A  E W+V  Y
Sbjct:  782 LEVFDPSLDAWVRPEAAEGAE-ATDVLCMPGEFLELASAGAFRAVVHRVL---GGPTKRVSTPLLVRGDRRFALGGVNAHDCWRALQEREPDRAAEA---IRGAPAHVDGASYVAPHRTRAEA-ETFYSLALGGAAEVLSADPLVVLLPGFASDADCAAVL---------AAASRTAWL-DDAAAP--GDLALRAAAVAELPPAHAERWRVAAY 975
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BLAST of mRNA_Ecto-sp13_S_contig59765.16549.1 vs. uniprot
Match: A0A7S4D4K1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K1_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.650e-13
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAI 222
            LE+  P+   WVRPE +  CRPG D+++L GELLQV   G Y AAVHRVV   G T  RVS PLL+R    AA+
Sbjct:   28 LEVFSPALDGWVRPEPA--CRPGRDIIILPGELLQVLSAGHYPAAVHRVVSVGGGTA-RVSAPLLVRPNPSAAV 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59765.16549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEM1_9PHAE2.400e-12475.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP64_ECTSI2.100e-11974.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YH17_AURAN9.680e-2237.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4D4K1_HETAK1.650e-1354.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59765contigEcto-sp13_S_contig59765:1..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score367.1
Seed ortholog evalue5.7e-99
Seed eggNOG ortholog2880.D7FP64
Model size648
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
Cds size648
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463830.6539955-CDS-Ecto-sp13_S_contig59765:0..3201681463830.6539955-CDS-Ecto-sp13_S_contig59765:0..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59765 1..320 +
1681463830.670964-CDS-Ecto-sp13_S_contig59765:455..6501681463830.670964-CDS-Ecto-sp13_S_contig59765:455..650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59765 456..650 +
1681463830.6887414-CDS-Ecto-sp13_S_contig59765:695..8281681463830.6887414-CDS-Ecto-sp13_S_contig59765:695..828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59765 696..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59765.16549.1prot_Ecto-sp13_S_contig59765.16549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59765 1..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59765.16549.1

>prot_Ecto-sp13_S_contig59765.16549.1 ID=prot_Ecto-sp13_S_contig59765.16549.1|Name=mRNA_Ecto-sp13_S_contig59765.16549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
LEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVV
RPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERSSEEAKQTRRE
IRRAAGGVSSPPPLAQAKTTDQIRECFEPYARDGVAVLSVDPLLVRLRGF
ASPGQCSAIIDQGMESLEESTTSATTWLADDCLAPLLGRLTERVSGMSGL
PSAFMENWQVLVYQGG
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mRNA from alignment at Ecto-sp13_S_contig59765:1..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59765.16549.1 ID=mRNA_Ecto-sp13_S_contig59765.16549.1|Name=mRNA_Ecto-sp13_S_contig59765.16549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59765:1..828+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGAGATCATCCAGCCATCGACAGGTCGCTGGGTGCGGCCGGAAGCATC
ACGGGACTGTCGGCCCGGCTCTGACGTCATGCTGCTCGCCGGAGAGCTGC
TGCAGGTGTTCGGGAGAGGCCGGTACCAGGCCGCTGTGCACCGCGTGGTG
CGGCCCGCGGGCAGTACGGAACCCCGTGTCTCAACCCCGTTGCTGCTCCG
CGGGATTGCCGGGGCTGCCATTCGAGGCTCGATGCTCCCGCCAGCGGTTG
CGGCGAGACTTGAGAGAAGTTCAGAGGAAGCGAAGCAAACACGGCGGGAG
ATAAGGAGGGCGGCGGGAGGGTCATCTTCGGAGGAAGGAGAAGAGGGGGG
AGAGCTGAACATGACGGATCTGTGGGCGGCTCTGCAGTTCAGGGGAGGCG
CGACGCCGGGGTCCAGCGGCGGCGCGGATGGTTGGAGCGGCGAGATCTCG
GACAGCGTTTCTTCCCCGCCGCCGCTCGCCCAAGCGAAGACCACCGACCA
GATCCGAGAGTGTTTTGAGCCGTACGCGCGGGATGGCGTCGCTGTCCTGA
GCGTCGACCCCCTCCTGGTCCGGCTGCGCGGCTTCGCGTCCCCGGGGCAA
TGCTCGGCGATCATCGACCAAGGGATGGAGAGCTTGGAGGAATCCACGAC
GTGGGGCGGCGCGGGCGCTCAGACCGAGTCGGACGCCCTGAGGAGAAGCG
CCACCACCTGGCTAGCGGACGACTGCCTCGCGCCGCTTCTCGGACGCTTG
ACGGAGAGGGTTAGTGGGATGTCCGGCTTGCCCTCGGCGTTCATGGAGAA
TTGGCAGGTGTTAGTATACCAGGGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59765:1..828+

>mRNA_Ecto-sp13_S_contig59765.16549.1 ID=mRNA_Ecto-sp13_S_contig59765.16549.1|Name=mRNA_Ecto-sp13_S_contig59765.16549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59765:1..828+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGAGATCATCCAGCCATCGACAGGTCGCTGGGTGCGGCCGGAAGCATC
ACGGGACTGTCGGCCCGGCTCTGACGTCATGCTGCTCGCCGGAGAGCTGC
TGCAGGTGTTCGGGAGAGGCCGGTACCAGGCCGCTGTGCACCGCGTGGTG
CGGCCCGCGGGCAGTACGGAACCCCGTGTCTCAACCCCGTTGCTGCTCCG
CGGGATTGCCGGGGCTGCCATTCGAGGCTCGATGCTCCCGCCAGCGGTTG
CGGCGAGACTTGAGAGAAGTTCAGAGGAAGCGAAGCAAACACGGCGGGAG
ATAAGGAGGGCGGCGGGAGGCGTTTCTTCCCCGCCGCCGCTCGCCCAAGC
GAAGACCACCGACCAGATCCGAGAGTGTTTTGAGCCGTACGCGCGGGATG
GCGTCGCTGTCCTGAGCGTCGACCCCCTCCTGGTCCGGCTGCGCGGCTTC
GCGTCCCCGGGGCAATGCTCGGCGATCATCGACCAAGGGATGGAGAGCTT
GGAGGAATCCACGACAAGCGCCACCACCTGGCTAGCGGACGACTGCCTCG
CGCCGCTTCTCGGACGCTTGACGGAGAGGGTTAGTGGGATGTCCGGCTTG
CCCTCGGCGTTCATGGAGAATTGGCAGGTGTTAGTATACCAGGGAGGT
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