mRNA_Ecto-sp13_S_contig11940.1655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11940.1655.1
Unique NamemRNA_Ecto-sp13_S_contig11940.1655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11940.1655.1 vs. uniprot
Match: D7FZI9_ECTSI (BUB1 N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI9_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.760e-96
Identity = 218/238 (91.60%), Postives = 220/238 (92.44%), Query Frame = 1 
Query:   31 PNDENRGAVTGASASRRGGRRLGQRPSADTGGGXXXXXXXXXRGVNSNASAARLGFAVFVEEEFTAGPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AAWADYGTRASRQKENTANPSRWTDGALGDRPGAAAPATTRPGERVRAAAPFPIYIDEQFVEKEEHATSAATAPHNPGPSAKRPPPGGGLSVRRQLDPKVGGSGGSAASAAVGGLGRKELLAKDPLFFVK 726
            PNDENRGAVTGASASRRGGRRLGQRPSADTGGGXXXXXXXXX     NAS+ARLGFAVFVEEEFTAGPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AAWADYGTRASRQKENTANPSRWTDGALGDRPGAAAPA TR GE VRAAAPFPIYIDEQFVEKEEHA  AATAPHNPGPSAKRPPPGGGLSVRRQLDPKVGGSGGS  SAAVGG+GRKELLAKDPLFFVK
Sbjct:  283 PNDENRGAVTGASASRRGGRRLGQRPSADTGGGXXXXXXXXXXXXXXNASSARLGFAVFVEEEFTAGPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWADYGTRASRQKENTANPSRWTDGALGDRPGAAAPAPTRRGEGVRAAAPFPIYIDEQFVEKEEHANPAATAPHNPGPSAKRPPPGGGLSVRRQLDPKVGGSGGSXXSAAVGGVGRKELLAKDPLFFVK 520
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11940.1655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZI9_ECTSI1.760e-9691.60BUB1 N-terminal domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11940contigEcto-sp13_S_contig11940:17..4773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score318.9
Seed ortholog evalue2e-84
Seed eggNOG ortholog2880.D7FZI9
Model size726
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.meiotic sister chromatid cohesion, centromeric
EggNOG OGsKOG1166@1,KOG1166@2759
EC2.7.11.1
Cds size726
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.2720575-CDS-Ecto-sp13_S_contig11940:16..2081681462632.2720575-CDS-Ecto-sp13_S_contig11940:16..208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11940 17..208 -
1681462632.2828095-CDS-Ecto-sp13_S_contig11940:1002..11351681462632.2828095-CDS-Ecto-sp13_S_contig11940:1002..1135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11940 1003..1135 -
1681462632.291377-CDS-Ecto-sp13_S_contig11940:3128..33161681462632.291377-CDS-Ecto-sp13_S_contig11940:3128..3316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11940 3129..3316 -
1681462632.3019092-CDS-Ecto-sp13_S_contig11940:4560..47731681462632.3019092-CDS-Ecto-sp13_S_contig11940:4560..4773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11940 4561..4773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11940.1655.1prot_Ecto-sp13_S_contig11940.1655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11940 17..4773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11940.1655.1

>prot_Ecto-sp13_S_contig11940.1655.1 ID=prot_Ecto-sp13_S_contig11940.1655.1|Name=mRNA_Ecto-sp13_S_contig11940.1655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
QAAAAAARRGPNDENRGAVTGASASRRGGRRLGQRPSADTGGGGGGRGSR
GGRGVNSNASAARLGFAVFVEEEFTAGPEAAAAAARARRAAGGGILDDSF
QDDGGGRSSSSSAAWADYGTRASRQKENTANPSRWTDGALGDRPGAAAPA
TTRPGERVRAAAPFPIYIDEQFVEKEEHATSAATAPHNPGPSAKRPPPGG
GLSVRRQLDPKVGGSGGSAASAAVGGLGRKELLAKDPLFFVK
back to top

mRNA from alignment at Ecto-sp13_S_contig11940:17..4773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11940.1655.1 ID=mRNA_Ecto-sp13_S_contig11940.1655.1|Name=mRNA_Ecto-sp13_S_contig11940.1655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11940:17..4773- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGCGGCGGCAGCAGCGCGACGAGGCCCGAACGATGAGAATCGAGG
GGCCGTTACGGGGGCATCCGCGTCCCGCAGGGGGGGACGGCGGCTGGGAC
AGAGGCCTTCTGCCGACACCGGGGGCGGGGGCGGCGGCAGGGGTAGTCGC
GGCGGGAGGGGCGTCAATAGTAACGCGTCTGCTGCTCGGCTTGGATTCGC
CGTTTTTGTGGAGGTACATCGGCTGTTTTTTTTGCTTGTGGGTAATTAAG
TGTCCCTATTTGTTATTGGCATTGATTGCGCTACCCGGCTGGCCAATGAA
CATTCGTCAGTCAAAATAAGGCTTGGGTTCACCGTTTTCGTGGAGGTAAG
TTGGCTGTTTGTTTCTTTTGTGTGTTTAGCATCCCTATTCGTTGTGAACA
TCGACAGCTGTTACCCGGCTGCCCAATGAAAACTCGTCAGTCTTACCAAG
GCTTGGGTTCATCGTTTTCGTGGAGGTACAGTAACTGGTTCTTTTTTTCG
TGCATATTTGTGATTTACATCGACGGCGCTAACTGGCTGACCAACAAAAA
TTGGCCACTCTCAGGGCGACTTCAGTTCATCGATGTCCCGGGAGTACTTT
TTTTTATTTTTTTTGTGTTCGTTTAGCGTACCTTTTCTGTGATAGCATCG
ACGGCGCCAACTGACTGGCCAATGACCATAGGTCGGCATCATGGCGGCTT
GAATTCGCCGGTTTCGTGGACGTATTGTCATGTATGTGCTGTTTTTTGTT
TGTGAGCACGTAGCAGTACTGATTCTTACGTCCGCACCGAGACTGATGTC
TTGTCATTGGTCAGACGGATAGCACGGTCGATGCTAATAGTATCAACACG
AGCACACGAGCACAGGATGCTGCTGTTGTTGTTGCTGTTTGTGTTGCTGT
TGTTGCTGGTGGAATTGTAGCATTAACATTTGCGGTATTGACCAGCTGAC
CATTGAAAGTACGCCAGTCTTCGGTGAGGCCAAACATGGGCAAGAATTCT
ACAGACCATGATCTGCGGCACCGTGAGTATTGTTGTCGTTCTTGTTGTGT
TTGGCATCGCAGCATTAGCATCGGCCGTATTAACCGGCTGACCAATGAGA
ACACGTCAGTCTTCGGTGTTGGCCAAACACAGGCAAAGATCTACAGGCTA
AGTGGCCATGATCTGGGGACCCGGAAGGAATGTTTGGGGGGGATGCTCAA
CAGGCTTCCTGCTCCTTCAAACACACCCCTCCCTTCCCCGCCATGCGACT
CACCGAATACCCCACCGCGGTTCGCGCTTGGTTTTGTGAGGGCCGGCCCC
GGTGAGAACCCCGGCGTATCGCTCCGCCCCGGCTTTGTAGGGATGCAAGG
TCAATGGTCGACCAACTACGGCATGCATGCACCACTGAGTACACCTCCCT
GAGTACACCACCCCCCCCCCCACCTGCCCCAACCCTCTTTTTCATTCATC
CATGCAGGAAGAGTTCACGGCCGGACCGGAGGCGGCGGCGGCGGCGGCGA
GAGCAAGGCGGGCGGCCGGAGGAGGCATCCTCGACGACTCGTTTCAAGAT
GATGGAGGAGGCCGTTCATCGTCTTCTTCAGCGGCGTGGGCGGACTACGG
TACTCGTGCTTCGCGTCAGAAGGAGAACACAGCCAACCCTAGCAGGTGTG
TGCCGGACGCCTTTTTTTTGTGTTTGTGGAAATCATCGGGCTCGTTGTGT
AATCTTTTCTTGCTGCATAGTGTGCGTGTTATTTAGATCCTCTGTTGGCT
CTACTGTAGCAGTTTTGTGACCACGAACTCGAGCTTTCTTGCTAGATTCA
GGGACTGGCAACTGACACGAGTTTTATGTGAAAACAACAACAACCAACAA
TCGACTTATCATGTCTAGTTCGAGTTGGCGTTGATTGTTGATTGGCTGAT
TACATACAACTAAGAATGGAACCACTAATCATATCTAGTTCGAGTTGATG
GTGAGTGTTGATCGGTTGATTGCAATCAATTAAGAACGGAACGACGAACT
TGACCGGCGGCAGCGGAATCAGAATCGGGTGCAGTGCAGTAGTGCACCCA
GTATAGCGCCGGTTGAATAGTTCCACAGTCCGGAACAGTACCGGTCAAAC
ATCAAGACACGAGTCTCAATTCCCGTACTAAAATCCGCATATCTCTGTGC
TGTGTAGCGTCGGTGGTCCTATTCAGTGCCGGTTAGACCTCAGGCCACGA
GTTCCGGCTCCGATGCTAGAGCCTACATTCACATCCCTGTTTTGAATACT
GCCGATGGCCCAATTTTGTGCCGGGGGCCCTGTTTAGTGCCAGCGGCCCT
TTTTAGTGCCGGCCAAGTCTCAGGAAACATGCCGGCACTATTATAGATAA
ATGTCGTACTATTATACATAGAAGACTCGCTACTGCTGTGGCAGCCTTCG
CAAGGGTATGTATAATTGGTTTTGTTCGGGGCTGGGGGTCAGGATCAGGG
TCTCGAAGTCCCCCCCCTCTCTATTTCACGTATGTCGTGCTTTTTTTGCT
AGCCAGTCGCGCGAGAAGAACACCGCCGACCGTAGGCTGCATCACACACG
TTTCATTCGGCGTTGGGGGTTGGGGTTAGGGTCCCCCCCCCCCCTTCTCT
GTTTCACGTAAATGTCATGCTTATTTTACTGGCCAGTGGCGCCAGAAGGA
GCACACCGCCGACCGTTGGCCGCATCAGATACGACACGTCGAGGTAGGTT
GCGCAAGATTATGATTCATCCAGTCGTCAGTTTTGGGGTTCGGGCATCCT
CTTCGTCTCGAGAAATCGAGCCGTGAAAATCGATCCAGGGGTACAGAACG
CGCCCGGACTGAAATAATCCCAGAGTTAAGAATTTGATGCTGAAAAAAAC
AAAATTTGTGAAACTTGAGCATCATGTGTTTGAGCTCGATTGAGAACCCC
TTTTCACTCAAACCTTTGATAGCGACCATTGATATGACCCTACAAATACA
GTAACAACCGCAGCCATGGCAAAAAAACTAGAACCCCAGCCTCGGCCGAA
TCAAGACTAGAGGTTTTTATGTATGTGCGTGCGCGTTCTGTATTCTTTTG
TTGTTTTGTGTTGATGGAGGTTGCATGGCGCAAGATAACCCACCCCCAGG
ACCGATTTTGAACCCCAGGCTTGGCCGAAACTAGAGGATTTTACGTGCGG
GCATGTTCAGCATGTGGTATGTATTGTGTGCTACCTCCGGCATGCGTGTC
GTTCATCCTCCCACCGTGACCAGAAAACAATTGGTAGCTGGAGAGACCGA
AAGAGAAAGGCAGGCGGTAGGCGACACCACTGCCATGTAGCATGTCAATC
AACACATGTCATCCGCGTACTCCCCATACCCCGCAGAGCACTCCAAACAC
AATATCCAACAACAAGCAGGTGCTTGCGTGGTTTGCTGATTGTGGTCGGG
GGTTGGTGATCCGGTGAGGCGGGTTCGACTAAGTCGTTCTTTTGCCGTCA
ATATCGATGGTGGCAATATCGGCATCAACATAAACAGCAGCAGCAGCACC
TGTGGAACCCCGAAACTTCACACCTTACAGCATCGCCCCAACACCGCCAA
TCACCCCCTACATCACCCCGTCCCCATGCGTTTTCTTGAGTACGAGCACC
CGCCCCCTTCCCCCCGTTGCTGCCCCCTTGGTGTCCAGGTGGACTGATGG
TGCCTTAGGAGACCGCCCTGGAGCCGCCGCCCCAGCCACTACCCGGCCGG
GTGAGAGAGTGAGGGCAGCGGCACCGTTCCCTATCTACATTGACGAGCAA
TTCGTGGAGAAGGAGGAGCATGTGAGCGATCCGCCTTGTGTGACCACGCC
CCCCCCCCCCTTCGTATACCTCACGGTGCTTCGCGCTTGGTGATGGGCTG
CAAGCCTAGTCCGGTGAAAACCCGGCGTATCGCTCCATCCCGGCCTCGTT
CGGATGCGAGTGTTGGGATGTAGCCTTGAGGTTGGTTGTATCTCTAGCAG
TGGCCCACAAAGGGTAATTCTCCTACGTACTGGTGTTTACAGCTGTGCAA
ATACAAATGACTGACATTGAAAACCGCGGGTTGCATAAGATATCACAAAC
CCTGGACTAATTTTCAAAGCTCAATTACTTTAAGACTAAGAGGATGCCTA
AATTGAAGTGTACGTTTTCGGAAAGCGATCTCTCGACGAGGCGGTTCCAA
CGCCGCCGTTTTCGGCAACGTCACGGCTTTGTCCTGCCGATACATTGAGC
TTCGAAAATCGGTCCAGGGGGTGTGACACCTTAAGCAACCTACGGTCCTA
AAGACATCTACGGTATTCCATCAGCGAGGGCGCTCTTTAAACGAGTATGG
GCTGCCCGACTATGAGTACCCCCCCCCCCCCCCCCCCACCCCGTGTTTGT
GGTTTAATACTGAGTGCAGGCTCCCCAAGTTCGGCAAGCAGTACCATACG
TTGACGAGCAGTTCGTCGAGAAAAAGGAGCATCTGCTCCCCGCCACCCCC
TCGACGTGGCTTTCTGCTTGCAGTAGTGCGGTCCGCTCATATTTGAGAGC
CTCTCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTC
TCCCCACACGTTTAGGCTACGTCTGCTGCGACCGCCCCCCACAACCCCGG
TCCATCGGCGAAGCGCCCGCCGCCTGGTGGAGGGTTGTCCGTAAGGCGTC
AGCTTGATCCCAAGGTGGGGGGGTCCGGGGGCTCTGCAGCATCAGCAGCG
GTGGGGGGGCTGGGGCGCAAAGAGCTTCTGGCAAAAGACCCTCTGTTCTT
TGTGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11940:17..4773-

>mRNA_Ecto-sp13_S_contig11940.1655.1 ID=mRNA_Ecto-sp13_S_contig11940.1655.1|Name=mRNA_Ecto-sp13_S_contig11940.1655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11940:17..4773- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGCGGCGGCAGCAGCGCGACGAGGCCCGAACGATGAGAATCGAGG
GGCCGTTACGGGGGCATCCGCGTCCCGCAGGGGGGGACGGCGGCTGGGAC
AGAGGCCTTCTGCCGACACCGGGGGCGGGGGCGGCGGCAGGGGTAGTCGC
GGCGGGAGGGGCGTCAATAGTAACGCGTCTGCTGCTCGGCTTGGATTCGC
CGTTTTTGTGGAGGAAGAGTTCACGGCCGGACCGGAGGCGGCGGCGGCGG
CGGCGAGAGCAAGGCGGGCGGCCGGAGGAGGCATCCTCGACGACTCGTTT
CAAGATGATGGAGGAGGCCGTTCATCGTCTTCTTCAGCGGCGTGGGCGGA
CTACGGTACTCGTGCTTCGCGTCAGAAGGAGAACACAGCCAACCCTAGCA
GGTGGACTGATGGTGCCTTAGGAGACCGCCCTGGAGCCGCCGCCCCAGCC
ACTACCCGGCCGGGTGAGAGAGTGAGGGCAGCGGCACCGTTCCCTATCTA
CATTGACGAGCAATTCGTGGAGAAGGAGGAGCATGCTACGTCTGCTGCGA
CCGCCCCCCACAACCCCGGTCCATCGGCGAAGCGCCCGCCGCCTGGTGGA
GGGTTGTCCGTAAGGCGTCAGCTTGATCCCAAGGTGGGGGGGTCCGGGGG
CTCTGCAGCATCAGCAGCGGTGGGGGGGCTGGGGCGCAAAGAGCTTCTGG
CAAAAGACCCTCTGTTCTTTGTGAAG
back to top