mRNA_Ecto-sp13_S_contig1194.1653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1194.1653.1
Unique NamemRNA_Ecto-sp13_S_contig1194.1653.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A6H5KXJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ1_9PHAE)

HSP 1 Score: 981 bits (2535), Expect = 0.000e+0
Identity = 526/583 (90.22%), Postives = 541/583 (92.80%), Query Frame = 1
Query:    1 MMSIPPVVRLSQALYNDVPSPAQSRSGGQRASPGLTSSLATATSIGATETNRRPAGMVRLLLPRTFAVADHSYHESLLTAGGGAVRERAAEHLVRGDAVVTKVQQNLVRIETTVGAQDECDGSGGSSSCGTASSAVTNNGICTSSQQPACSIQSSATGAPGGAALVVVESVLGFSAVQSLLDRSHAENTPLTSNPSTAGDAIEPEQPPRDDPPRGCAGTAGPVGVCSLRDAGTDGNKSFGATRCSASYCSNSSTGGVSAAVGRLVAWLRIAVATTGLQERGRPGGFNSSGSVLGGSTSACASSVVETAMNARRTDRTATGFSMCGIDVDHDLLLAASVATAGGRAYGTRYKVTGRCDGGERWIAFDLEPIAGPQGQ----TPEGGDSGNGAAGEVLQVRLICHPLVTMVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIRDEELENIASIAGSFLKRSRRANHRLLQSQLDAASGGGSSGDEGAKNGVGQGWVRQRIDVRTDEWHRVRALPMYCSSG 1737
            MMSIPPVVRLSQALYNDVPSPAQSRSGGQRASPG T+SLA A SIGATETN RPAGMVRLLLPRTFAVADHSYHESLLTAGGGAVRERAAEH VRGDAVVTKVQQNLVRIETTVG QDE DGSGG+SSCGTASS VTNNGICTSSQQPACS+QSSAT APGGAALVVVESVLGFSAVQSLLDRS+AEN  L++NPSTAG AIEPEQPP D+PPRGCAGT GP  VCS RD   DGNKSFG TRCS S  SNSST GVSAAVGRLVAWLRIA A TGLQERGRPGGFNSSGSVLGGSTSACASSVVETAMNARRTDRTATGFSMCG+DV+ DLLLAA+VATAGGRA+GT YKVTGRCD GERWIAFDLEP AGP GQ    TPEGGDSGNGAAGEVLQVRLICHPLVTMVPDIRWCLQLISQAKA ATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVA ALGDL+LAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAI+DEELEN+ASIAG FLKRSRRANHRLLQSQLDA SGGGSSGDEGAKNGV QGWVRQ+IDVRTDEWHRVRALPMY SSG
Sbjct:    1 MMSIPPVVRLSQALYNDVPSPAQSRSGGQRASPGRTASLAAAASIGATETNSRPAGMVRLLLPRTFAVADHSYHESLLTAGGGAVRERAAEHFVRGDAVVTKVQQNLVRIETTVGPQDERDGSGGNSSCGTASSPVTNNGICTSSQQPACSMQSSATVAPGGAALVVVESVLGFSAVQSLLDRSYAENMRLSANPSTAGSAIEPEQPPGDEPPRGCAGTTGPADVCSRRDVDADGNKSFGVTRCSTSNSSNSSTCGVSAAVGRLVAWLRIAAAITGLQERGRPGGFNSSGSVLGGSTSACASSVVETAMNARRTDRTATGFSMCGLDVEDDLLLAAAVATAGGRAHGTWYKVTGRCDRGERWIAFDLEPTAGPPGQLERRTPEGGDSGNGAAGEVLQVRLICHPLVTMVPDIRWCLQLISQAKAIATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVAEALGDLRLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIQDEELENMASIAGRFLKRSRRANHRLLQSQLDAPSGGGSSGDEGAKNGVSQGWVRQKIDVRTDEWHRVRALPMYYSSG 583          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: D7FM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM16_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.230e-111
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 1
Query: 1210 MVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIRDEELENIASIAGSFLKRSRRANHRLLQSQLDAASGGGSSGDEGAKNGVGQGWVRQRIDVRTDEWHRVRALPMYCSSGRATPVGL 1758
            MVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYN IWLGQYDEAQRII+AQVAASR I+DEELENIASIAG FLKRSRRANHRLLQSQLDAASGGGS GDEGAK+GVGQGWVRQRIDVRTDEWHRVRALP+YCSSGRATPVGL
Sbjct:    1 MVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNCIWLGQYDEAQRIIHAQVAASRVIQDEELENIASIAGRFLKRSRRANHRLLQSQLDAASGGGSRGDEGAKSGVGQGWVRQRIDVRTDEWHRVRALPLYCSSGRATPVGL 183          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A835YTQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.590e-21
Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1171 VLQVRLICHPLVTMVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIRDEELENIAS 1533
            ++ V LIC PL TM PD+ W  +L +       L  ANA LSTLGGG FL RQVG A+ LA AQ  VA  +GD  L GKCRVN AY  +WLG+Y +A+  I  Q A ++   D+EL   AS
Sbjct:  152 LVDVELICAPLATMAPDMAWARRLNAWNAQRVRLTQANAVLSTLGGGRFLCRQVGHAMVLARAQQAVAAKMGDDTLRGKCRVNEAYGMVWLGRYADAKAAIKRQKALAQLRGDQELLAFAS 272          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A7S1ZF84_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF84_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 5.860e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 1216 PDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRA 1500
            P+  +  +L+        L   N   STLGGGYFL R +  A+RLA +Q  VA A+GD  LA +C+VN AYNY+  G    A R++      +RA
Sbjct:    5 PERSFASKLVRLQNLAIRLRTLNGYFSTLGGGYFLCRYLTTAVRLARSQRCVALAMGDADLAARCKVNEAYNYVHAGMVGRALRLLREVKREARA 99          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A7S0ALK7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ALK7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.520e-9
Identity = 57/163 (34.97%), Postives = 78/163 (47.85%), Query Frame = 1
Query: 1192 CHPLVTMVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRII-NAQVAASRAIRDEELENIASIAGSFLKRSRRANHRLLQSQLDAASGGGSSGDEGAKNGVGQGWVRQRI 1677
            C    T+ P+  +  +L+        L + NA  STLGGGYFL R +  A++LA  Q  VA  LGD  LAG+C VN AYNYI  G+   A  +I NA+  A        +E   ++  S  K +R    R+L+ Q            EG+K  V   + R RI
Sbjct:  160 CTSPPTLEPERLFTSRLVRLENIMVRLQSLNAFFSTLGGGYFLCRYLTTAVQLARWQRAVALTLGDRDLAGRCTVNEAYNYIHAGKLGHAFLLIKNAKADA--------VERGDTLTVSMCKSARYFAKRVLKMQAF----------EGSKQEVDDEYQRIRI 304          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A7S4VXM2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VXM2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.540e-9
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 1198 PLVTMVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIRDEEL 1518
            P   + P+  +   LI Q   F  L   NA L+TLGGG FL R +  AI LA  Q  VA  + D  LA KC VN AYNYI  G+ +EA  ++  +V    A+R + L
Sbjct:  114 PYPNLYPERLFTSHLIKQQNLFIRLKTLNAFLATLGGGCFLCRYLSTAIALARYQRYVALLMDDADLASKCTVNEAYNYIHAGKINEALVMLR-KVKKDSALRGDNL 219          
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Match: A0A7S3V4B0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4B0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.770e-7
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1240 LISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRLALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQV 1485
            L+ Q      L   NA ++TLGGGYFL + +  A++LA  Q  +A AL D  LA KC VN AYNYI  G  + A+ +I++ +
Sbjct:  183 LVKQENLNIRLQTLNAYVATLGGGYFLCKYLKIAVKLARYQRTIAYALDDHNLAMKCTVNEAYNYIHAGMVNHAKVLIDSTI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1194.1653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KXJ1_9PHAE0.000e+090.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM16_ECTSI3.230e-11195.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTQ5_9STRA1.590e-2149.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1ZF84_TRICV5.860e-1140.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0ALK7_9STRA1.520e-934.97Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4VXM2_9STRA3.540e-941.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3V4B0_9STRA3.770e-742.68Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1194contigEcto-sp13_S_contig1194:1732..6659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.5
Seed ortholog evalue5e-92
Seed eggNOG ortholog2880.D7FM16
Model size2513
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Domain of unknown function (DUF4807)
EggNOG OGs2C1F8@1,2S2PK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010270.1
Cds size1809
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1194.1653.1prot_Ecto-sp13_S_contig1194.1653.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1194 1732..5955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.9932103-CDS-Ecto-sp13_S_contig1194:1731..28541681462631.9932103-CDS-Ecto-sp13_S_contig1194:1731..2854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1194 1732..2854 +
1681462632.0039587-CDS-Ecto-sp13_S_contig1194:3580..36831681462632.0039587-CDS-Ecto-sp13_S_contig1194:3580..3683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1194 3581..3683 +
1681462632.0152845-CDS-Ecto-sp13_S_contig1194:4410..45521681462632.0152845-CDS-Ecto-sp13_S_contig1194:4410..4552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1194 4411..4552 +
1681462632.025222-CDS-Ecto-sp13_S_contig1194:4975..50891681462632.025222-CDS-Ecto-sp13_S_contig1194:4975..5089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1194 4976..5089 +
1681462632.0340142-CDS-Ecto-sp13_S_contig1194:5628..59551681462632.0340142-CDS-Ecto-sp13_S_contig1194:5628..5955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1194 5629..5955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.0437195-UTR-Ecto-sp13_S_contig1194:5955..66591681462632.0437195-UTR-Ecto-sp13_S_contig1194:5955..6659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1194 5956..6659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1194.1653.1

>prot_Ecto-sp13_S_contig1194.1653.1 ID=prot_Ecto-sp13_S_contig1194.1653.1|Name=mRNA_Ecto-sp13_S_contig1194.1653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=603bp
MMSIPPVVRLSQALYNDVPSPAQSRSGGQRASPGLTSSLATATSIGATET
NRRPAGMVRLLLPRTFAVADHSYHESLLTAGGGAVRERAAEHLVRGDAVV
TKVQQNLVRIETTVGAQDECDGSGGSSSCGTASSAVTNNGICTSSQQPAC
SIQSSATGAPGGAALVVVESVLGFSAVQSLLDRSHAENTPLTSNPSTAGD
AIEPEQPPRDDPPRGCAGTAGPVGVCSLRDAGTDGNKSFGATRCSASYCS
NSSTGGVSAAVGRLVAWLRIAVATTGLQERGRPGGFNSSGSVLGGSTSAC
ASSVVETAMNARRTDRTATGFSMCGIDVDHDLLLAASVATAGGRAYGTRY
KVTGRCDGGERWIAFDLEPIAGPQGQTPEGGDSGNGAAGEVLQVRLICHP
LVTMVPDIRWCLQLISQAKAFATLLNANAKLSTLGGGYFLTRQVGQAIRL
ALAQSEVATALGDLQLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRA
IRDEELENIASIAGSFLKRSRRANHRLLQSQLDAASGGGSSGDEGAKNGV
GQGWVRQRIDVRTDEWHRVRALPMYCSSGRATPVGLGGETNRGQRVAFVC
PK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1194:1732..6659+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1194.1653.1 ID=mRNA_Ecto-sp13_S_contig1194.1653.1|Name=mRNA_Ecto-sp13_S_contig1194.1653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4928bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1194:1732..6659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCGATCCCACCCGTTGTGCGGCTGTCACAAGCCCTCTACAATGA CGTACCTTCCCCTGCCCAATCTCGGTCAGGAGGTCAACGGGCATCGCCCG GGCTCACTTCGAGTTTGGCGACTGCAACTTCCATTGGAGCAACGGAGACA AATAGGCGACCTGCCGGTATGGTGCGCTTGCTTTTGCCTAGGACGTTCGC GGTGGCCGATCATTCTTATCACGAAAGCTTGTTAACAGCCGGAGGTGGTG CGGTACGAGAGCGAGCAGCAGAGCACTTGGTCCGCGGTGATGCGGTTGTA ACGAAGGTTCAGCAGAACCTTGTCCGCATCGAAACTACTGTGGGTGCTCA GGACGAGTGCGATGGCAGCGGCGGCAGCAGCTCCTGTGGCACGGCCTCGT CCGCTGTAACTAACAACGGCATCTGTACCAGTTCACAGCAACCAGCGTGT TCTATCCAGTCATCGGCAACGGGAGCACCAGGTGGGGCGGCGCTCGTCGT AGTTGAGAGTGTCCTCGGTTTCTCGGCCGTGCAATCCCTGCTTGATCGGT CCCACGCGGAAAACACGCCCTTGACCTCGAATCCAAGCACAGCAGGAGAC GCTATCGAGCCTGAGCAGCCTCCAAGAGATGATCCTCCCCGCGGCTGCGC CGGCACAGCTGGACCTGTTGGTGTATGCAGCCTTCGAGACGCTGGTACCG ATGGGAATAAGTCGTTCGGGGCAACACGCTGTTCTGCTAGTTATTGCAGT AATAGCAGCACGGGCGGCGTCTCCGCAGCCGTTGGGCGCTTGGTGGCGTG GCTCCGGATTGCGGTGGCGACTACCGGGCTACAGGAACGGGGGCGGCCAG GTGGTTTCAACAGCAGCGGTAGTGTGCTCGGCGGCAGCACCAGCGCCTGC GCCAGCAGCGTCGTAGAGACGGCAATGAACGCGAGAAGAACGGACAGAAC AGCGACGGGGTTCTCCATGTGTGGTATTGATGTTGACCATGACTTACTGC TCGCGGCGTCGGTCGCAACGGCGGGCGGGCGAGCTTATGGTACGCGGTAC AAGGTGACCGGGCGATGCGACGGGGGCGAGCGGTGGATAGCCTTCGACCT CGAGCCGATAGCGGGACCCCAAGGTGATGCACGGGTGTTCGAATTGTTCC CGCGGCGAACGAACCGCTGCGGTCGCTACGCTCACCCCATGAGGACGTGT GTTGAACAGCCGAGTGATGATCTGCTGACGAAGTGTGACACAGTCCTTGC GGTCATGGTTGGCAAGGTGTGGGTCGAAAGTTGGCGTTTCTGTGTTGAGT TTTTTGTGACTGTTGTTGTGGCGGTTGCGCGCTCTCGTTGCTTTGTGCCT GATGCGCCCTGGAATCATAATGCAACTGTCCAGCGCTGTGTGCACCTGGT GGTGAATGCGTTGCCGAAATTGCCCCGTCGGAGTCTTACCACATTCAAAA TAAACAGATTTTTTGCTCTAGTTTGACCCCCACGTTGGCGGCGTCACATA TCTGTGTTGGCATGCAACAACACAAAAGTTGTCCCCGACGGGTACGGTAT GCGACGATTCTCAGTCTAGACACCCGTACAGTTTTCGCTCGGGAGGCAGC GACGACAACATGAGCCGACAACCACAGGAGTGTGCTTACATGTAGCGCAA ACGCAAGTCGTAACATCGCCTGCGCCAGTCTCCAGAACGTTTCCGTAACG ATGATTATTTGCCCGCTGTGATGCACCAGCGCACAACAATACTTGCCAAG AACGGAACGCTGGAACAATTCATCACAGTTACTCATGGAGCGACCTACAT CCACCGTCTGTATCATCGTCTGGTCCCCATTGTACTGGACAACTTGAAGG GCAAACGCCGGAGGGTGGGGATAGCGGGAACGGGGCGGCAGGGGAAGTAC TACAGGTCAGGCTTATTTGTCATCCGCTGGTTACGATGGTACCGGACATT AGGTAAGACTTGCGCGTGAAGGGTAGACAAGGTTATGATGCAAAGCAGTT TTCTGAGGGGGTGGCACTTGTTTGTTTGGCCATTGCACGGTAACCTGTGG AGGTCAAGCACCGTGAGTAAATTCATTACTACGTCAATACCCTCTTCCCA GTCTAGCACACTTCAACTTGTAGCGATACTGCAACGTATACATGAACGCA CTGGCATGAAGAATAGTACAAGTACTTGGTCTCTTGAATTCGTATGTGGC GCTTGTTGTTACAGCAGTGGGCACCAATCGGTACGATACATGCGCCATTT CGGGTGTGGTCGAACACCTAAAATGCGGAGGCGTGGTACCCTGCTTGTGT ACGCATAAACCTAGCCTAGGTTTAGTCGAGCCGACGACCTAGAATGCTTG GGTATGCGGCACAAGGATCCCAAGGTCGGGGTAGCTGTCACCGGCTACCT TGGGCAGGCAGACTTCTCTATTGAAGCTTGGGCAAGGAAAGAACGTCCAA AAAGGGAGCTGTACACGGGCAGTGCCACAAGTGGCCGGCCCGCTCACGCC AGTCAGTAGCATGGGGGAGATTCGTGTATCTGTTAGTGCTCTCTCGAGGT CCTATGGTTCTCGAAACGCTAAAGGGGATCGTTCCCTCCTATACTTTGAA TGCGTACACACAAATTCTACGTTTCGAATACACTTGTCATCTACACTACG GGACAAATCGATCGTATGTGTTTGTGCAGGTGGTGCCTCCAACTGATCAG TCAAGCCAAGGCCTTCGCCACTCTCTTGAACGCCAACGCAAAGCTTAGCA CCCTAGGGGGAGGCTACTTCCTCACCCGGCAGGTCGGACAGGCGATACGT CTAGCCCTTGCCCAATCAGAGGTAAGAGTGTAGTGGACCCGATGTGCCCA TTTTCTCGAAGTCACCCGTGTGTATAGCCTGTATCGCGACGCAGTTCTGA TTTGACAAAGGATCGCACCCATTCAGCAGCAGAGAACTTGTCGATCACCC CCGATCTTCGGGGCGCATTTAACCCATTGCGTGGTTTGTACCCGCAGTAC TGATACACGCTCAACCAAAAACCGGCGGCGGTGTCCGAGGTTGTTTGTGA AATGCGATGAGTTGCTGCTGGGGACCCCAGGAAGAAGATGCCATTGGTGC CCCAAAAGGACCACCTAAACGAGGAGTTCTCACCCTGTCCATGTGGCATT CGCAAAACAAGAAAGGAATCTGGGCATCCCATTCGTCCATGCTTTAACCT ACGGGTTGTGGGCGCACCCTCCGTTCTGGATTTTGCTTTCGAAGGTAGCA ACAGCACTCGGGGATTTGCAGCTCGCCGGGAAATGCCGTGTCAATGTGGC CTACAACTATATCTGGCTGGGACAGTACGATGAGGCACAACGTATCATCA ACGCGCAGGTTGGTCAGAGTCCCATGAACAGGCTTGGTGGCATGTTTTGT ACCCTTTCCCTGCATGCTCTGGTTCGCATGTTGCACCCAAGTAGGTGGCC CGTAAAACTGTGGCTGCAGTGTTGCATAGGACGAAACAACTTGTCTCCTT TTACAAGATAAAGAGCGTTTGGGTTTCCGAAAGAGAATGTTTTCCCACAT GTTTTCGTTGGGGCACTTTTCATGGATGAGCTATGTTGTCCGAGCACTGA ACTTGTGCTCTTCGAGTATCAACACGTACAGACGGCTCGTAAGTTTGCGA GCACAGGGTTGTTTGGTATTTTGTGTGTCGCCAGTGTAGGTCGCGGTTCG TTTCTTCAACACACACGCTTCTGACCGCGCACATCAGTCTTTGGCGACAT TGGCTCACCGCTGGATCACGTTGGAACCGTCGCCAACCCGTGTTCAAAGT TTCCTGGGTTCTTCAGTGACATGATTTGTGTTCAAAACAGATCATCGACG GGGAAGACGACATCAACGCTTTTTGTCAACGTGTTACCAACGCACAGGTG GCTGCGTCCCGCGCCATCCGAGACGAGGAGCTAGAAAACATTGCTTCCAT CGCCGGTAGCTTCTTGAAGAGGTCAAGGAGGGCCAACCACCGCTTGTTGC AAAGCCAGCTTGATGCCGCCAGTGGCGGAGGCAGCAGTGGTGATGAGGGT GCAAAGAACGGTGTTGGCCAGGGATGGGTCCGGCAAAGAATAGACGTAAG GACAGATGAGTGGCACCGTGTGCGTGCCCTGCCAATGTACTGCAGTAGCG GTCGAGCCACCCCCGTGGGTTTGGGAGGCGAGACAAATCGAGGTCAACGT GTTGCCTTTGTATGTCCAAAGTGAGATTGCTTTACACAGTACGTACAACC GTGGCTTCGAATTTTCCTCCACCGTGGTCAAATTGCTCGAGTGTGTTGAT TTTTTTCGATCTGAAAGTCTGTACGAGTTACACCTTGTATTTTAGTTGTC GACATCATCCAGCCACGGGATTGAGCCTTTTTCCTGAAGTTCCGGAGGGC GAGACGAGTTCAATGCCGGAAGGGCCGGTTTCGCCTTCTCGAGAGTTGCT CGGAGAGTCTTGCAGCGGCGGTGCCGAGGTGGGACAGTGTGACACTGCTG TGTGTGCCACTCTTTCGATGCTCTTTAGCGGTGGCGGAGCCTTCACATTG CAGTGGGGTACGAAGACGAGGCAGGGACGCTACGAACGGTATAAAACGAT CGAAATTTCAGTCACGTATGGGTATGTTCGTTGAGCCTTTGAGGGGGTGC GTTTGGGTGCGGACCTGCTTAGAGGATAGTCGAGGTGGACACGCGAGAGA ACTTGTTTGTGTGTGTACTCGGCAGGATACGAATCTCCGAGATCGTCGGG GGGTTACGCAGATAGATATACATGATGGGTGTGATGGACTTGACGCGCAA GGCTCTTCTTGCCTGCCCACGTCTCTCACTCGTTAATCGTTAATCAAGGA ACTTGAGTCACTCCTATGTGCAAAACCCTGTCGACAAGAGCCCGCGACCA TGATAACATAGCACACGCGCCGACACCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1194:1732..6659+

>mRNA_Ecto-sp13_S_contig1194.1653.1 ID=mRNA_Ecto-sp13_S_contig1194.1653.1|Name=mRNA_Ecto-sp13_S_contig1194.1653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1809bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1194:1732..6659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCGATCCCACCCGTTGTGCGGCTGTCACAAGCCCTCTACAATGA
CGTACCTTCCCCTGCCCAATCTCGGTCAGGAGGTCAACGGGCATCGCCCG
GGCTCACTTCGAGTTTGGCGACTGCAACTTCCATTGGAGCAACGGAGACA
AATAGGCGACCTGCCGGTATGGTGCGCTTGCTTTTGCCTAGGACGTTCGC
GGTGGCCGATCATTCTTATCACGAAAGCTTGTTAACAGCCGGAGGTGGTG
CGGTACGAGAGCGAGCAGCAGAGCACTTGGTCCGCGGTGATGCGGTTGTA
ACGAAGGTTCAGCAGAACCTTGTCCGCATCGAAACTACTGTGGGTGCTCA
GGACGAGTGCGATGGCAGCGGCGGCAGCAGCTCCTGTGGCACGGCCTCGT
CCGCTGTAACTAACAACGGCATCTGTACCAGTTCACAGCAACCAGCGTGT
TCTATCCAGTCATCGGCAACGGGAGCACCAGGTGGGGCGGCGCTCGTCGT
AGTTGAGAGTGTCCTCGGTTTCTCGGCCGTGCAATCCCTGCTTGATCGGT
CCCACGCGGAAAACACGCCCTTGACCTCGAATCCAAGCACAGCAGGAGAC
GCTATCGAGCCTGAGCAGCCTCCAAGAGATGATCCTCCCCGCGGCTGCGC
CGGCACAGCTGGACCTGTTGGTGTATGCAGCCTTCGAGACGCTGGTACCG
ATGGGAATAAGTCGTTCGGGGCAACACGCTGTTCTGCTAGTTATTGCAGT
AATAGCAGCACGGGCGGCGTCTCCGCAGCCGTTGGGCGCTTGGTGGCGTG
GCTCCGGATTGCGGTGGCGACTACCGGGCTACAGGAACGGGGGCGGCCAG
GTGGTTTCAACAGCAGCGGTAGTGTGCTCGGCGGCAGCACCAGCGCCTGC
GCCAGCAGCGTCGTAGAGACGGCAATGAACGCGAGAAGAACGGACAGAAC
AGCGACGGGGTTCTCCATGTGTGGTATTGATGTTGACCATGACTTACTGC
TCGCGGCGTCGGTCGCAACGGCGGGCGGGCGAGCTTATGGTACGCGGTAC
AAGGTGACCGGGCGATGCGACGGGGGCGAGCGGTGGATAGCCTTCGACCT
CGAGCCGATAGCGGGACCCCAAGGGCAAACGCCGGAGGGTGGGGATAGCG
GGAACGGGGCGGCAGGGGAAGTACTACAGGTCAGGCTTATTTGTCATCCG
CTGGTTACGATGGTACCGGACATTAGGTGGTGCCTCCAACTGATCAGTCA
AGCCAAGGCCTTCGCCACTCTCTTGAACGCCAACGCAAAGCTTAGCACCC
TAGGGGGAGGCTACTTCCTCACCCGGCAGGTCGGACAGGCGATACGTCTA
GCCCTTGCCCAATCAGAGGTAGCAACAGCACTCGGGGATTTGCAGCTCGC
CGGGAAATGCCGTGTCAATGTGGCCTACAACTATATCTGGCTGGGACAGT
ACGATGAGGCACAACGTATCATCAACGCGCAGGTGGCTGCGTCCCGCGCC
ATCCGAGACGAGGAGCTAGAAAACATTGCTTCCATCGCCGGTAGCTTCTT
GAAGAGGTCAAGGAGGGCCAACCACCGCTTGTTGCAAAGCCAGCTTGATG
CCGCCAGTGGCGGAGGCAGCAGTGGTGATGAGGGTGCAAAGAACGGTGTT
GGCCAGGGATGGGTCCGGCAAAGAATAGACGTAAGGACAGATGAGTGGCA
CCGTGTGCGTGCCCTGCCAATGTACTGCAGTAGCGGTCGAGCCACCCCCG
TGGGTTTGGGAGGCGAGACAAATCGAGGTCAACGTGTTGCCTTTGTATGT
CCAAAGTGA
back to top