mRNA_Ecto-sp13_S_contig5951.16505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5951.16505.1
Unique NamemRNA_Ecto-sp13_S_contig5951.16505.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 1069 bits (2765), Expect = 0.000e+0
Identity = 561/633 (88.63%), Postives = 572/633 (90.36%), Query Frame = 1
Query:    1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEKSKSHLGSSNDDVGSFQTKISQIACGATICLAAVNXXXXXXXXXXXX--AIDLAPLACLLEWGTGLYGERLSTEASVPQQGDDRKPASFLNHPAQVAFSSFPLGLRSSPPAVRYIVCGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSASGTPLDEGGLANTSSGAAGAATG----VKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVAGSPRRPQQDTTASAAGDSATVNDSGASPASGKRKLATISSAPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQHYGGRGGGKQKGEDGSSVRGTGTGDGKGPPLRPFSVPREMNPAELLQDAAPPNSQMDEGGEGRCCCEVGSPKGVRAGAADKEDPRWKVSTVGCGPWFVVFGLQEEERQ 1881
            MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEK KSH  SSNDDV   QTKISQIACGAT CLAAVNXXXXXXXXXXXX  AID AP A LLEWGTGLYGERLSTE SVPQQGD+R   SFLNHPA VAFSS PLGLRSSPPA+RYI CGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQC +GSTPAA PLSYPSSS PDWVAEPLGLGGSKVADLAAGDDHVIAVGTDG AWAWGRGDCGQLGYGSP DG D DGG SACVPMAV LPS ASGTPLDEGGLA+TSSGAAGA       VKSGHG+Q+PRK PGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTG+E VACGAWHTAALSTTGDVYTWGWARFGALGPSP VAG  RRPQQDTTAS  GDSAT+NDSGASPASGKRKL T SS PAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQ YGGRGGG+QKG DGSSVRG  TGD KGPPL PFSVPREM PA+LLQDAAP NSQ DE  EGRC CEVGSP+GVRAGA DK D RWKVSTVGCGPWFVVFGLQEEERQ
Sbjct:    1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQGDERNQESFLNHPAPVAFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSP-DGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQQYGGRGGGEQKGGDGSSVRGIDTGDRKGPPLGPFSVPREMKPADLLQDAAPSNSQTDERREGRCYCEVGSPRGVRAGAVDKGDSRWKVSTVGCGPWFVVFGLQEEERQ 632          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 1036 bits (2680), Expect = 0.000e+0
Identity = 542/632 (85.76%), Postives = 555/632 (87.82%), Query Frame = 1
Query:    1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEKSKSHLGSSNDDVGSFQTKISQIACGATICLAAVNXXXXXXXXXXXXAIDLAPLACLLEWGTGLYGERLSTEASVPQQGDDRKPASFLNHPAQVAFSSFPLGLRSSPPAVRYIVCGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSASGTPLDEGGLANTSSGAAGAATGVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVAGSPRRPQQDTTASAAGDSATVNDSGASPASGKRKLATISSAPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQHYGGRGGGKQKGEDGSSVRGTGTGDGK----GPPLRPFSVPREMNPAELLQDAAPPNSQMDEGGEGRCCCEVGSPKGVRAGAADKEDPRWKVSTVGCGPWFVVFGLQEEERQG 1884
            MKRGQEILVGVGDSSFCQIPCPWASWSRQTAD  SKSH  S N+DV   QTKISQIACGAT CLAAVNXXXXXXXX    AID A  + LLEWGTGLYGERLSTE SVPQQGD+R  ASFLNHPAQVA SS PLGLRSSPP +RYI CGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGG SACVPMAV LPS ASGTPLDEGGLA+TSSGAAGAATGVKSGHGV       GALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTG+EAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFV GSP RPQQDTTASA GDSAT+NDSGASPASGKRKL +  S PA EEGEVRPYPGLVD MDDILADDDDQLVSVSCGARYT+ATS+KGRAFVWGQVAPPLQHYGGRGG                        G  L PFS PREM PAELLQDAAPPNSQMDEGGEGRCCCEVGS KG+RAGA D+ D RW+VS VGCGPWFVVFGLQEEERQG
Sbjct:    1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADANSKSHP-SRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXS---AIDHARPSFLLEWGTGLYGERLSTETSVPQQGDERNHASFLNHPAQVALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVH------GALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVTGSPLRPQQDTTASATGDSATINDSGASPASGKRKLKSARSTPAEEEGEVRPYPGLVDEMDDILADDDDQLVSVSCGARYTVATSTKGRAFVWGQVAPPLQHYGGRGGXXXXXXXXXXXXXXXXXXXXXXXXGRRLGPFSAPREMKPAELLQDAAPPNSQMDEGGEGRCCCEVGSAKGLRAGADDEGDSRWRVSAVGCGPWFVVFGLQEEERQG 622          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.560e-21
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  934 RKCPGALVIRA---ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            R C  AL  +A   A G  HSA++ + GR++TFGSG   QLG G   +    P +V+ L+GVG + P+G+ TGI  V+CG WHTAA++T GD+YTWGW RFG LG
Sbjct:    9 RPCTVALGAQAWSVAAGPVHSAVVDSKGRLYTFGSGGRYQLGHGQAVDEPE-PRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLG 112          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.860e-19
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  967 ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            A G  HSA+I+ DG ++TFG GL+ QLG GT     + PT V +L GVG ++ +  FTG+  VACGAWHTAAL+TTGDVYTWGW + G LG
Sbjct:  165 AAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNVFT-PTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLG 253          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A2C9V2R9_MANES (Uncharacterized protein n=8 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9V2R9_MANES)

HSP 1 Score: 101 bits (252), Expect = 4.110e-19
Identity = 74/202 (36.63%), Postives = 97/202 (48.02%), Query Frame = 1
Query:  646 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSASGTP----LDEGGLANTSSGAAGAATGVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            G ++A +AAG  H +A+   G  W WG G  GQLG GS               P  VH  +S+ G      L  GG+A+              GHG     + PG+ +   ACG  HSA+IT+ G + TFG GL+GQ G G+  +  S P  V AL+G+           IE VA G WHT  +S  GDVY +G  +FG LG
Sbjct:  222 GVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVR--------MVSSPHPVHCINSSYGKDITGALSRGGMAS-------------EGHGY----RVPGSYIKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PICVSALLGIR----------IEGVAAGLWHTVCISADGDVYAFGGNQFGQLG 387          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.650e-19
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  967 ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGAL 1236
            A G  HSA+I+ DG ++TFG GL+ QLG GT     + PT V +L GVG ++ +  FTG+  VACGAWHTAAL+TTGDVYTWGW + G L
Sbjct:  165 AAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNVFT-PTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQL 252          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A6P4MW89_GOSAR (ultraviolet-B receptor UVR8-like n=33 Tax=Malvaceae TaxID=3629 RepID=A0A6P4MW89_GOSAR)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-18
Identity = 73/201 (36.32%), Postives = 99/201 (49.25%), Query Frame = 1
Query:  646 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSAS---GTPLDEGGLANTSSGAAGAATGVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            G ++A +AAG  H +A+  +G  W WG G  GQLG GS           S+  P+    PSS      + L  G L++                  +   + PG+ V   ACG  HSA+IT+ G + TFG GL+GQ G G+  +  S PT V AL+G+           IE+VA G WHT  +ST GDVY +G  +FG LG
Sbjct:  229 GVRIATVAAGGRHTLALSDNGQVWGWGYGGEGQLGLGSRIRMV------SSPHPIPCIEPSSLGKDRASALSRGSLSSE-----------------RQSFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSALLGIR----------IESVAAGLWHTVCVSTDGDVYAFGGNQFGQLG 395          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0PG70_GOSAR)

HSP 1 Score: 99.0 bits (245), Expect = 1.930e-18
Identity = 73/201 (36.32%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  646 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSAS---GTPLDEGGLANTSSGAAGAATGVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            G ++A +AAG  H +A+   G  W WG G  GQLG GS           S+  P+    PSS      + L  G L++                  +   + PG+ V   ACG  HSA+IT+ G + TFG GL+GQ G G+  +  S PT V AL+G+           IE+VA G WHT  +ST GDVY +G  +FG LG
Sbjct:  163 GVRIATVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSRIRMV------SSPHPIPCIEPSSLGKDRASALSRGSLSSE-----------------RQSFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSALLGIR----------IESVAAGLWHTVCVSTDGDVYAFGGNQFGQLG 329          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A834WAP7_9FABA (Ultraviolet-B receptor UVR8 isoform X1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WAP7_9FABA)

HSP 1 Score: 99.0 bits (245), Expect = 3.660e-18
Identity = 74/199 (37.19%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  646 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSAS-GTPLDEGGLANTSSGAAGAATGVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            G ++A +AAG  H +A+   G  W WG G  GQLG GS          S   +P     P      T L  GG+++                  QN R  PG+ V   ACG  HSA+IT+ G + TFG GL+GQ G G+  +  S PT V +L+G+           IE VA G WHT  +ST GDVY +G  +FG LG
Sbjct:  246 GVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVS----SPHLIPCIDSSPYGKDRSTALARGGMSSEG----------------QNFR-VPGSYVKEIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSSLLGIQ----------IEGVAAGLWHTVCISTHGDVYAFGGNQFGQLG 412          
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Match: A0A0L9UW84_PHAAN (Uncharacterized protein n=6 Tax=Vigna TaxID=3913 RepID=A0A0L9UW84_PHAAN)

HSP 1 Score: 99.0 bits (245), Expect = 3.720e-18
Identity = 72/199 (36.18%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  646 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGSSACVPMAVHLPSSASGTPLDEGGLANTSSGAAGAATGVKSGHGVQNPR-KCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGDVYTWGWARFGALG 1239
            G ++A +AAG  H +A+   G  WAWG G  GQLG GS                  + + SS    P     + ++  G   +AT V+   G +    + PG+ + R ACG  HSA+IT+ G + TFG GL+GQ G G+  +  S PT V +L+G+           IE VA G WHT   S  GDVY +G  +FG LG
Sbjct:  250 GIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGS-----------------RIRMVSSPHLVPC----IDSSYYGKDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSSLLGIH----------IEGVAAGLWHTVCTSADGDVYAFGGNQFGQLG 416          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5951.16505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF1_9PHAE0.000e+088.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN13_ECTSI0.000e+085.76Regulator of chromosome condensation-like protein ... [more]
A0A7S2WVU6_9STRA1.560e-2150.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W4GMU7_9STRA2.860e-1957.14Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A2C9V2R9_MANES4.110e-1936.63Uncharacterized protein n=8 Tax=Crotonoideae TaxID... [more]
W4GLY5_9STRA4.650e-1956.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6P4MW89_GOSAR1.840e-1836.32ultraviolet-B receptor UVR8-like n=33 Tax=Malvacea... [more]
A0A0B0PG70_GOSAR1.930e-1836.32RCC1 domain-containing 1 n=1 Tax=Gossypium arboreu... [more]
A0A834WAP7_9FABA3.660e-1837.19Ultraviolet-B receptor UVR8 isoform X1 n=1 Tax=Sen... [more]
A0A0L9UW84_PHAAN3.720e-1836.18Uncharacterized protein n=6 Tax=Vigna TaxID=3913 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5951contigEcto-sp13_S_contig5951:6237..8655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1043.9
Seed ortholog evalue3.1e-302
Seed eggNOG ortholog2880.D8LN13
Model size1887
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-27_000990.1
Cds size1887
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.0574658-CDS-Ecto-sp13_S_contig5951:6236..68941681463827.0574658-CDS-Ecto-sp13_S_contig5951:6236..6894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5951 6237..6894 -
1681463827.0697877-CDS-Ecto-sp13_S_contig5951:7426..86551681463827.0697877-CDS-Ecto-sp13_S_contig5951:7426..8655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5951 7427..8655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5951.16505.1prot_Ecto-sp13_S_contig5951.16505.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5951 6237..8655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5951.16505.1

>prot_Ecto-sp13_S_contig5951.16505.1 ID=prot_Ecto-sp13_S_contig5951.16505.1|Name=mRNA_Ecto-sp13_S_contig5951.16505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=629bp
MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEKSKSHLGSSNDDVGSFQ
TKISQIACGATICLAAVNNNNNNNNNSSSSAIDLAPLACLLEWGTGLYGE
RLSTEASVPQQGDDRKPASFLNHPAQVAFSSFPLGLRSSPPAVRYIVCGA
HFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYP
SSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLG
YGSPPDGADCDGGSSACVPMAVHLPSSASGTPLDEGGLANTSSGAAGAAT
GVKSGHGVQNPRKCPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLG
LGTVGETSSIPTVVDALIGVGTMRPDGSFTGIEAVACGAWHTAALSTTGD
VYTWGWARFGALGPSPFVAGSPRRPQQDTTASAAGDSATVNDSGASPASG
KRKLATISSAPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTL
ATSSKGRAFVWGQVAPPLQHYGGRGGGKQKGEDGSSVRGTGTGDGKGPPL
RPFSVPREMNPAELLQDAAPPNSQMDEGGEGRCCCEVGSPKGVRAGAADK
EDPRWKVSTVGCGPWFVVFGLQEEERQG*
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mRNA from alignment at Ecto-sp13_S_contig5951:6237..8655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5951.16505.1 ID=mRNA_Ecto-sp13_S_contig5951.16505.1|Name=mRNA_Ecto-sp13_S_contig5951.16505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5951:6237..8655- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAGGTCAAGAGATCCTTGTTGGTGTGGGAGACTCGAGTTTTTG CCAAATTCCGTGCCCTTGGGCGTCTTGGAGTCGCCAGACAGCAGATGAGA AAAGCAAGAGCCACCTCGGCAGCAGCAACGATGATGTCGGGAGTTTTCAA ACCAAGATATCCCAGATAGCGTGCGGCGCGACTATCTGTCTTGCTGCCGT GAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCGCGATTGATC TCGCACCTCTGGCTTGCCTTCTGGAATGGGGAACTGGCCTTTACGGCGAA AGATTGTCCACGGAAGCGTCTGTACCACAGCAGGGAGACGACCGAAAACC CGCGTCGTTTTTGAATCACCCCGCACAGGTGGCGTTCTCGAGCTTTCCGT TGGGGCTCCGCAGCAGCCCTCCGGCGGTTCGATATATCGTGTGTGGCGCG CATTTCGTCGTGGCTTCTCTGGAAAACGGTGGCTGCATCTCGTGGGGTGG CGGTCGAGAGGGGAGGAGGGCCCTTGGACGCGGGAGCTGCGGGACTTGTG GCCAGTGTCGTAACGGGTCAACCCCGGCGGCTCCACCGCTATCCTACCCC AGTAGCAGCAAGCCCGACTGGGTAGCAGAACCTCTGGGTTTGGGAGGTTC GAAGGTGGCCGACTTAGCGGCGGGGGACGATCATGTTATCGCTGTCGGCA CGGACGGGAGCGCGTGGGCTTGGGGCCGAGGAGATTGTGGGCAGCTCGGC TACGGTTCTCCTCCCGATGGTGCGGATTGCGATGGCGGCAGTAGTGCGTG CGTGCCGATGGCTGTCCACCTACCATCCTCGGCGAGCGGCACTCCTCTAG ATGAAGGTGGTCTCGCAAACACTTCTTCTGGTGCTGCCGGTGCTGCTACT GGTGTTAAGTCGGGTCACGGTGTGCAAAACCCGCGAAAATGTCCCGGAGC GCTTGTTATACGAGCTGCCTGCGGTCGTGATCACAGCGCCATCATTACAA ACGATGGCCGGATCTGGACTTTCGGGAGCGGACTCCACGGGCAACTAGGC TTGGGAACTGTAGGCGAGACATCGTCGATTCCCACCGTGGTAGACGCTTT AATAGGGGTAGGAACCATGCGACCGGACGGCTCCTTTACCGGCATAGAGG CTGTGGCGTGTGGTGCGTGGCACACAGCGGCTCTGTCTACGACGGGAGAC GTGTACACCTGGGGATGGGCACGTTTTGGGTGAGTAGGTTTGAGAGATTT CCGACAAAAGATGCGATTCGTCAAGATGCTGAAAAACCCGCTCCGTGTTG ACTAGCGACACGCTCTTCAGCGTTTACCTTCGAACATGATGCATGAGTGG TAGACCCCTCATTATTCCCTGCACCCCAGACCCTCCCCGCAAGCAGTCGA CGGAAACAAGGATTCGGCCAATCTCGCCAAGGGCAAGCAACACCGAAGGA GTAGGTGGTCCATCCTTCAACAACGGCACCACAACAGCAGTTGCCGAGGG GTTTAGTTGCAGACCGTACACCTTAAGTACCCAACGACCTGTTTCTCTCG TCTCCGAAATGCCATCTCACCCCTGTGGGGGGCAGTTGGCTTGTGTCCAC GGAAGGCGTCCGCGTCAGTGGACCAGTACGGACATTAGAAGGTGAGTGGA GACCGGAACGGTTTTAAATATAAAGACAACAACAGCAACAACAACAACAA CAACACCGCTTGTAGACCCTCATTTGCCTCGGCTTTGGAATCTCTTTCTG ACACGCGATAGGGCGTTAGGACCTTCGCCTTTCGTGGCCGGTTCCCCCCG CCGGCCGCAACAAGACACTACCGCCTCCGCCGCCGGGGATAGTGCTACAG TCAACGACAGCGGTGCAAGCCCGGCAAGTGGCAAGAGGAAGCTCGCAACA ATAAGCTCTGCACCAGCGGCAGAGGAAGGTGAAGTTCGACCATACCCTGG CCTCGTGGACGGGATGGATGATATTTTGGCGGACGATGACGACCAGCTCG TGTCCGTCTCTTGCGGCGCGCGGTACACCCTAGCAACGTCGAGCAAAGGC AGGGCGTTTGTGTGGGGGCAAGTGGCGCCACCTTTACAGCACTACGGCGG GCGGGGCGGCGGGAAGCAGAAGGGCGAGGATGGCAGTAGCGTCAGAGGTA CCGGCACGGGTGACGGGAAGGGGCCTCCGCTTAGGCCTTTTTCAGTTCCG AGAGAGATGAACCCCGCGGAGCTTCTTCAGGATGCTGCACCGCCGAACTC ACAGATGGACGAGGGAGGGGAAGGTCGGTGTTGCTGCGAGGTCGGCTCCC CAAAAGGAGTGCGAGCAGGGGCTGCCGACAAAGAGGATCCGCGTTGGAAG GTGTCGACGGTTGGATGTGGGCCTTGGTTCGTTGTATTCGGACTCCAAGA GGAAGAGCGGCAAGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5951:6237..8655-

>mRNA_Ecto-sp13_S_contig5951.16505.1 ID=mRNA_Ecto-sp13_S_contig5951.16505.1|Name=mRNA_Ecto-sp13_S_contig5951.16505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1887bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5951:6237..8655- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAGGTCAAGAGATCCTTGTTGGTGTGGGAGACTCGAGTTTTTG
CCAAATTCCGTGCCCTTGGGCGTCTTGGAGTCGCCAGACAGCAGATGAGA
AAAGCAAGAGCCACCTCGGCAGCAGCAACGATGATGTCGGGAGTTTTCAA
ACCAAGATATCCCAGATAGCGTGCGGCGCGACTATCTGTCTTGCTGCCGT
GAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCGCGATTGATC
TCGCACCTCTGGCTTGCCTTCTGGAATGGGGAACTGGCCTTTACGGCGAA
AGATTGTCCACGGAAGCGTCTGTACCACAGCAGGGAGACGACCGAAAACC
CGCGTCGTTTTTGAATCACCCCGCACAGGTGGCGTTCTCGAGCTTTCCGT
TGGGGCTCCGCAGCAGCCCTCCGGCGGTTCGATATATCGTGTGTGGCGCG
CATTTCGTCGTGGCTTCTCTGGAAAACGGTGGCTGCATCTCGTGGGGTGG
CGGTCGAGAGGGGAGGAGGGCCCTTGGACGCGGGAGCTGCGGGACTTGTG
GCCAGTGTCGTAACGGGTCAACCCCGGCGGCTCCACCGCTATCCTACCCC
AGTAGCAGCAAGCCCGACTGGGTAGCAGAACCTCTGGGTTTGGGAGGTTC
GAAGGTGGCCGACTTAGCGGCGGGGGACGATCATGTTATCGCTGTCGGCA
CGGACGGGAGCGCGTGGGCTTGGGGCCGAGGAGATTGTGGGCAGCTCGGC
TACGGTTCTCCTCCCGATGGTGCGGATTGCGATGGCGGCAGTAGTGCGTG
CGTGCCGATGGCTGTCCACCTACCATCCTCGGCGAGCGGCACTCCTCTAG
ATGAAGGTGGTCTCGCAAACACTTCTTCTGGTGCTGCCGGTGCTGCTACT
GGTGTTAAGTCGGGTCACGGTGTGCAAAACCCGCGAAAATGTCCCGGAGC
GCTTGTTATACGAGCTGCCTGCGGTCGTGATCACAGCGCCATCATTACAA
ACGATGGCCGGATCTGGACTTTCGGGAGCGGACTCCACGGGCAACTAGGC
TTGGGAACTGTAGGCGAGACATCGTCGATTCCCACCGTGGTAGACGCTTT
AATAGGGGTAGGAACCATGCGACCGGACGGCTCCTTTACCGGCATAGAGG
CTGTGGCGTGTGGTGCGTGGCACACAGCGGCTCTGTCTACGACGGGAGAC
GTGTACACCTGGGGATGGGCACGTTTTGGGGCGTTAGGACCTTCGCCTTT
CGTGGCCGGTTCCCCCCGCCGGCCGCAACAAGACACTACCGCCTCCGCCG
CCGGGGATAGTGCTACAGTCAACGACAGCGGTGCAAGCCCGGCAAGTGGC
AAGAGGAAGCTCGCAACAATAAGCTCTGCACCAGCGGCAGAGGAAGGTGA
AGTTCGACCATACCCTGGCCTCGTGGACGGGATGGATGATATTTTGGCGG
ACGATGACGACCAGCTCGTGTCCGTCTCTTGCGGCGCGCGGTACACCCTA
GCAACGTCGAGCAAAGGCAGGGCGTTTGTGTGGGGGCAAGTGGCGCCACC
TTTACAGCACTACGGCGGGCGGGGCGGCGGGAAGCAGAAGGGCGAGGATG
GCAGTAGCGTCAGAGGTACCGGCACGGGTGACGGGAAGGGGCCTCCGCTT
AGGCCTTTTTCAGTTCCGAGAGAGATGAACCCCGCGGAGCTTCTTCAGGA
TGCTGCACCGCCGAACTCACAGATGGACGAGGGAGGGGAAGGTCGGTGTT
GCTGCGAGGTCGGCTCCCCAAAAGGAGTGCGAGCAGGGGCTGCCGACAAA
GAGGATCCGCGTTGGAAGGTGTCGACGGTTGGATGTGGGCCTTGGTTCGT
TGTATTCGGACTCCAAGAGGAAGAGCGGCAAGGCTAA
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