prot_Ecto-sp13_S_contig5935.16484.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5935.16484.1
Unique Nameprot_Ecto-sp13_S_contig5935.16484.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length169
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 5.780e-97
Identity = 151/169 (89.35%), Postives = 153/169 (90.53%), Query Frame = 0 
Query:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKTFRGMIEKFAKRQGRIRGSGGGGGGLEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVEDFWLT 169
            MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKML SMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVK FRGMIEKFAK +             EQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLV+DFWLT
Sbjct:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSE-------------EQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLT 156
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BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.670e-9
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 0 
Query:    9 QAFAQILMARKVMSQDEAQKALDVSYQRF--GELAFTLDEAISKVDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKTFRGMIEKFAKRQG 114
            QAF Q+L+A +V+S+++AQ  L+    R   G L   L+  + +V++ L  MD+ VR+M    P     H  +N  AD+IA+ HGSK++  +++ FR  I    +  G
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTMAL--PQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDG 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK7_ECTSI5.780e-9789.35Non-structural maintenance of chromosomes element ... [more]
A0A7S2VZL5_9STRA4.670e-934.26Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 9..118
e-value: 7.3E-8
score: 32.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5935contigEcto-sp13_S_contig5935:2139..7685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5935.16484.1mRNA_Ecto-sp13_S_contig5935.16484.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5935 2139..7685 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5935.16484.1 ID=prot_Ecto-sp13_S_contig5935.16484.1|Name=mRNA_Ecto-sp13_S_contig5935.16484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISK
VDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVK
TFRGMIEKFAKRQGRIRGSGGGGGGLEQQLELLDLQGLTEHIKTKEAEST
KREMIKSFADQLVEDFWLT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1