mRNA_Ecto-sp13_S_contig5911.16439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5911.16439.1
Unique NamemRNA_Ecto-sp13_S_contig5911.16439.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5911.16439.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.770e-27
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 HDVIGSPVQVEGRSMQPAINPHLGPESQQGGGLDVVWQDKLSISRHIYERGS 156
            HDVIGSPVQVEGRSMQPAINPHLGPESQQG  LDVVWQDK SISRHIYERGS
Sbjct:   24 HDVIGSPVQVEGRSMQPAINPHLGPESQQGESLDVVWQDKRSISRHIYERGS 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5911.16439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXB9_ECTSI6.770e-2794.23Mitochondrial inner membrane protease subunit 2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5911contigEcto-sp13_S_contig5911:345..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.5
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D7FXB9
Model size158
KEGG koko:K09648
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0681@1,KOG1568@2759
Ec32 ortholog descriptionImp2 homolog, Inner Membrane Peptidase complex subunit 2
Ec32 orthologEc-04_000030.1
Cds size156
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.8757274-CDS-Ecto-sp13_S_contig5911:344..4231681463821.8757274-CDS-Ecto-sp13_S_contig5911:344..423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5911 345..423 -
1681463821.8901262-CDS-Ecto-sp13_S_contig5911:1140..12171681463821.8901262-CDS-Ecto-sp13_S_contig5911:1140..1217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5911 1141..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5911.16439.1prot_Ecto-sp13_S_contig5911.16439.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5911 345..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5911.16439.1

>prot_Ecto-sp13_S_contig5911.16439.1 ID=prot_Ecto-sp13_S_contig5911.16439.1|Name=mRNA_Ecto-sp13_S_contig5911.16439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
HDVIGSPVQVEGRSMQPAINPHLGPESQQGGGLDVVWQDKLSISRHIYER
GS
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mRNA from alignment at Ecto-sp13_S_contig5911:345..1217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5911.16439.1 ID=mRNA_Ecto-sp13_S_contig5911.16439.1|Name=mRNA_Ecto-sp13_S_contig5911.16439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5911:345..1217- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGACGTCATAGGGTCCCCGGTGCAAGTGGAAGGGAGGTCGATGCAGCC
AGCGATCAACCCGCACTTGGGCCCAGAGTAAGCAGCCGGCGTGTGTTGGC
GTGTGTTACTGACTGCGCGCGCCATCTCGTGTGGCATCGTCCAGCTCTTG
TCCTCCATCCACTTTAGAGAGGAGCAGACACCGGACGAATTGCTGTAGGC
CCGAGGCGATCTGTGACTGCATCAAACGCTTTGGGTGGTTGGTTTTCTGG
ACATCCTGCTTTGGACCGACGGTGCAGCGGCGATAGCGCGCCTACTTAAC
TCATGTTCTACCACTGCGGTGCCAGACGTGCGAGTTGCGTCCCCGTACCC
GTGAAAAAGGTATAAGTGTTTGAACACAGTACCGAGAAGCGCTTGGTCTG
GTTCGCTGAAGCTTCCAAGGTAGTTTCCTGAGCAGCGGCTACATCAGGAT
GATAGCGATCTGAGCAGCTGTTCAAAGGCCACCGCCGCGTGTACCATGTG
CGCGGCAGGTGCTAACAGCGTCAGCTGGACCGGGACGGACATGAAGGGCA
CCGAGCAGAGACCAAATCGTGTTTTATGTGAAGACAAGAACATCAGCAAC
CATCTGATCGACAAAGGCTAAACCATAGTGAGGCAACAACATCAGCAACC
ATCTAATCGATAAAGGCTAAACCTTTCGACTACTCGGTCTCTGCAGCTGA
CCGAGTAGTCTACAGTGTACCAGTGGTGTTGCCTCAATCGATCACTATTC
TCATCACACCGCGGTTGACGCCCTCTCTGCCTGTGTGCCAGCAGGAGCCA
ACAAGGCGGAGGCTTGGACGTGGTGTGGCAGGACAAGCTGAGCATCTCGA
GACACATCTACGAGCGAGGCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5911:345..1217-

>mRNA_Ecto-sp13_S_contig5911.16439.1 ID=mRNA_Ecto-sp13_S_contig5911.16439.1|Name=mRNA_Ecto-sp13_S_contig5911.16439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5911:345..1217- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGACGTCATAGGGTCCCCGGTGCAAGTGGAAGGGAGGTCGATGCAGCC
AGCGATCAACCCGCACTTGGGCCCAGAGAGCCAACAAGGCGGAGGCTTGG
ACGTGGTGTGGCAGGACAAGCTGAGCATCTCGAGACACATCTACGAGCGA
GGCTCC
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