mRNA_Ecto-sp13_S_contig5908.16435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5908.16435.1
Unique NamemRNA_Ecto-sp13_S_contig5908.16435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5908.16435.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.110e-56
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 2 
Query:    2 VFNSCYALNKLAMSDANHEVMGQKGVPKPLVLVVGSGSSGDLNTTGQAVSALRRLASNADNAVGMVRDGVLDALRHVCEEVGCVENQREAAALLCALAVPYE 307
            VFNSCYALNKLAMS+ NHEVMGQKGVPKPLVLVVGSGSSGDL+TTGQAVSALRRLASNADNAVGMVRDGVLDALRHVCEEVGCVENQREAAALLCALAVPYE
Sbjct: 2066 VFNSCYALNKLAMSEENHEVMGQKGVPKPLVLVVGSGSSGDLSTTGQAVSALRRLASNADNAVGMVRDGVLDALRHVCEEVGCVENQREAAALLCALAVPYE 2167
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BLAST of mRNA_Ecto-sp13_S_contig5908.16435.1 vs. uniprot
Match: A0A7S4D4S5_HETAK (Vacuolar protein 8 (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4S5_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 3.790e-7
Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = 2 
Query:    5 FNSCYALNKLAMSDANHEVMGQKGVPKPLVLVVGSGSSGDLNTTGQAVSALRRLASNADNAVGMVRDGVLDALRHVCEEVGCVENQREAAALLCALAVPYE 307
            FN+ YALNKLAM++ NH+VMG+  V  PLV +  +   GD     QA+SALRR                        E+ G  E +RE AALLC L+V  E
Sbjct:    5 FNAAYALNKLAMNEENHQVMGEGEVLPPLVTL--ADEEGDARC--QALSALRRXXXXXXXXXXXXXXXXXXXXXXAAEQ-GDEETRRECAALLCNLSVSDE 100
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BLAST of mRNA_Ecto-sp13_S_contig5908.16435.1 vs. uniprot
Match: A0A5D6XHQ7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 2 
Query:    5 FNSCYALNKLAMSDANHEVMGQKG-VPKPLV-LVVGSGSSGDLNTTGQAVSALRRLASNADNAVGMVR---DGVLDALRHVCEEVGCVENQREAAALLCALAVPY 304
            FN+ +AL KLAM+ A HE++G++     PL+ L + +  +   +   QAVS LRRL     N V M+      +LDALR  C     +E QREA A +C L + +
Sbjct: 1976 FNAAFALGKLAMNGAYHELIGRESNCGGPLIQLAIDADRAQHRSAQCQAVSVLRRLTCLDANCVAMMAAHSGALLDALRG-CAAQPELEAQREAVACVCNLTLAF 2079
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5908.16435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT75_ECTSI3.110e-5697.06Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S4D4S5_HETAK3.790e-740.59Vacuolar protein 8 (Fragment) n=2 Tax=Heterosigma ... [more]
A0A5D6XHQ7_9STRA1.750e-538.10Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5908contigEcto-sp13_S_contig5908:5941..7219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size311
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.3772824-CDS-Ecto-sp13_S_contig5908:5940..59981681463821.3772824-CDS-Ecto-sp13_S_contig5908:5940..5998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 5941..5998 +
1681463821.3894765-CDS-Ecto-sp13_S_contig5908:6675..68191681463821.3894765-CDS-Ecto-sp13_S_contig5908:6675..6819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 6676..6819 +
1681463821.404483-CDS-Ecto-sp13_S_contig5908:7111..72181681463821.404483-CDS-Ecto-sp13_S_contig5908:7111..7218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 7112..7218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5908.16435.1prot_Ecto-sp13_S_contig5908.16435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5908 5941..7218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5908.16435.1

>prot_Ecto-sp13_S_contig5908.16435.1 ID=prot_Ecto-sp13_S_contig5908.16435.1|Name=mRNA_Ecto-sp13_S_contig5908.16435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RFQLLLRPEQARHERRKSRGHGTKRRSEAPRACGGLGLERGPQHYRAGGV
GSSKAGLQCGQRRRDGQGWRFGRSQARLRRGGLCGEPKRGGGAPLRLGGA
VRE
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mRNA from alignment at Ecto-sp13_S_contig5908:5941..7219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5908.16435.1 ID=mRNA_Ecto-sp13_S_contig5908.16435.1|Name=mRNA_Ecto-sp13_S_contig5908.16435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5908:5941..7219+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTTTCAACTCCTGTTACGCCCTGAACAAGCTCGCCATGAGCGACGCAA
ATCACGAGGTGGGTACTTTAGGCGATGAGATGCGATGAATGTTGGTTATC
GTTCGGTGTTGACAGGGAGGACCCTTGCTATCTCCGACGAAAATACAGAC
GGTCTTCAAATAATCTTACCGACCGATCCCGCGAGCTCTACGTGTTGCCT
CTCGTGCAGCGGAAAGAAAGCACGCCAAGTTCAAAAACAGTGGCGCATGT
TCAAGCACTCCTGTCGAAAGCGCTGGTCGAAAGTGCCGGGAATGTTGGCA
CTTGCTCTGGTCTCATGTTACCGGGATGTTCGCCCCCAACCCAGAGTCGA
ACGTCGGCACACCTGCACTCCCATCGCCATACCGTTGTCTCTGCTACATG
AACTGATTCTCCGGAGCCGTGCGTAAACGAAGGTCTGTTTGAAAAGCCCT
GAAGCACACAAATCTTGGTCGCAGGCATGCTAAGGTCATGAAACACCTAC
AGGAGTTGCAACCGAACAAGCCAGATCAACGAACGAACGAGCGCAAGGTT
GTTCAAGGCGGAAGGTGTTTCTCTCGGGAATGAGAAGCGTTCACCAGCAG
AAGTCGCAAGATTTAAGAAACTAAAAAGCGCACGCTAGCTTTACCTGATG
GGGGCGAGGGAACAACGTATAAAGATGTTAAAAGAGACACGCCTTTGAAA
GTTGCGAGCGGGTTCTTCGACCAACCATTCGGCAGGTCATGGGACAAAAA
GGCGTTCCGAAGCCCCTCGTGCTTGTGGTGGGCTCGGGCTCGAGCGGGGA
CCTCAACACTACCGGGCAGGCGGTGTCGGCTCTTCGAAGGCTGGCCTCCA
ATGCGGACAACGCCGTCGGGATGGTCAGGGTGAGTAATTTTCTTGTGGCG
CAACCTTTCTTGTTTCTGTTTTTCAAGTTATGCGGCTTGTCTGCCGGTTT
CCGTGGCCTTCTTCCACGGATAGGCCTTTGTTTCGATGTTTTTGCGCCCT
TCTAGATGTGCTGTTTCGTCACCTTCGTCATGGTGTTGATGGCAACCATG
AGCAAGCGAAGGTACAGATGCTTTTATACACGGCTATTTTGTTTTTCATT
TGAAATGTGAGCAATCTCTGCATCGAGAAACCCCGACGACCGAAAGCTCT
TTTCCCGTTGAAAATGTGCAGGATGGCGTTTTGGACGCTCTCAGGCACGT
CTGCGAAGAGGTGGGCTGTGTGGAGAACCAAAGAGAGGCGGCGGCGCTCC
TCTGCGCCTTGGCGGTGCCGTACGAGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5908:5941..7219+

>mRNA_Ecto-sp13_S_contig5908.16435.1 ID=mRNA_Ecto-sp13_S_contig5908.16435.1|Name=mRNA_Ecto-sp13_S_contig5908.16435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5908:5941..7219+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTTTCAACTCCTGTTACGCCCTGAACAAGCTCGCCATGAGCGACGCAA
ATCACGAGGTCATGGGACAAAAAGGCGTTCCGAAGCCCCTCGTGCTTGTG
GTGGGCTCGGGCTCGAGCGGGGACCTCAACACTACCGGGCAGGCGGTGTC
GGCTCTTCGAAGGCTGGCCTCCAATGCGGACAACGCCGTCGGGATGGTCA
GGGATGGCGTTTTGGACGCTCTCAGGCACGTCTGCGAAGAGGTGGGCTGT
GTGGAGAACCAAAGAGAGGCGGCGGCGCTCCTCTGCGCCTTGGCGGTGCC
GTACGAGAA
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