mRNA_Ecto-sp13_S_contig5902.16427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI) HSP 1 Score: 266 bits (681), Expect = 2.680e-83 Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 1
Query: 151 MPGISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
MPGI DMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSA FYRMLDQLNDECDKLI+EG+
Sbjct: 1 MPGIDDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGI 129
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE) HSP 1 Score: 234 bits (597), Expect = 2.320e-70 Identity = 119/174 (68.39%), Postives = 124/174 (71.26%), Query Frame = 1
Query: 151 MPGISDMLGVWEIKEVKGRPRQAEARELLQKLADQ---------------------------------------------VKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
M GI DMLGVWEIKEVKGRPRQA+ARELLQKLADQ VKPICVAHKWKVVLLLEFIPNNP LLGLNVNRGQKICIRLRPPSDEGSFYPYEFI+GTMLHELVHNQIGPHSA FYR+LDQLNDECDKL +EG+
Sbjct: 1 MSGIGDMLGVWEIKEVKGRPRQADARELLQKLADQASPTTTELATAGLETCPTEHIAYVLPRIVVAAAEWILVGAVRFGLVKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGI 174
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A0U9HKT4_KLENI (Fe2+/Zn2+ regulated transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKT4_KLENI) HSP 1 Score: 154 bits (390), Expect = 2.560e-41 Identity = 69/126 (54.76%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
++D+ VWEIK +K + R EAR++L+ +A QV+PI KWKV +L EF P NP LLGLNVNRGQ++ IRLRP + FYP+E +LGTMLHEL HN++GPH+ANFY++LD++ EC+ L+ +G+
Sbjct: 6 VADLDKVWEIKVLK-KERAEEARKMLEAVAKQVQPIMRKRKWKVRMLSEFSPTNPALLGLNVNRGQEVKIRLRPHKRDSEFYPWEHVLGTMLHELTHNEVGPHNANFYKLLDEITKECEDLMAKGI 130
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A315ANL9_PRUYE (WLM domain-containing protein n=9 Tax=Prunus TaxID=3754 RepID=A0A315ANL9_PRUYE) HSP 1 Score: 149 bits (377), Expect = 1.060e-40 Identity = 66/126 (52.38%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
+ D+ +WEIK +K + ++AEAR++L+K+A QV+PI HKW+V LL EF PNNP LLGLNVNRG + +RLR P+ + FYP + +L TMLHEL HN GPH A FY++ D+L EC++L+ +G+
Sbjct: 3 LGDLNKIWEIKTLKRKDQEAEARKILEKIAKQVQPIMRKHKWRVKLLSEFCPNNPRLLGLNVNRGVHVKLRLRRPNRDWDFYPIDQVLDTMLHELCHNVHGPHDAKFYKLWDELRKECEELMSKGI 128
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A2U1PKA2_ARTAN (WLM-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PKA2_ARTAN) HSP 1 Score: 149 bits (375), Expect = 1.140e-40 Identity = 66/126 (52.38%), Postives = 94/126 (74.60%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
++D+ VWE K + + RQ EA+++L+K+A QV+PI KWKV LL EF P NP LLGLNVN G+++ +RLR ++E F+PYE IL TMLHEL HNQ GPH+A+FY +LD++ EC++L+ +G+
Sbjct: 3 LNDLNKVWETKPLNNKVRQDEAKQILEKVAKQVQPIMRKRKWKVKLLSEFCPPNPALLGLNVNGGEEVQLRLRRQNNEWDFFPYEQILDTMLHELCHNQFGPHNADFYNLLDEIRKECEELMAKGI 128
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A6S7MWI1_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI1_LACSI) HSP 1 Score: 148 bits (373), Expect = 1.560e-40 Identity = 66/126 (52.38%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
++D+ VWE+K +K + R+ EA+E+L+K+A QV+PI HKWKV +L EF P NP LLGLN+N G ++ +RLR ++E F+PYE IL TMLHEL HNQ GPH+A+FY +LD++ EC++L+ +G+
Sbjct: 3 LNDLNKVWEVKPLK-KVREDEAKEILEKIAKQVQPIMRKHKWKVNILSEFCPPNPALLGLNINGGAEVKLRLRRQNNEWDFFPYEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGI 127
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A118K3D4_CYNCS (WLM-like protein n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K3D4_CYNCS) HSP 1 Score: 147 bits (371), Expect = 2.010e-40 Identity = 65/126 (51.59%), Postives = 97/126 (76.98%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
++D+ VWE+K +K +PR+ EARE+L+K+A QV+PI KWKV +L EF P+NP LLGLNVN G ++ +RLR ++E F+PYE IL TMLHEL HN+ GPH+++FY +L+++ EC++L+ +G+
Sbjct: 3 LNDLNKVWEVKPLK-KPREDEAREILEKVARQVQPIMRKRKWKVKILSEFCPSNPALLGLNVNGGAEVKLRLRRQNNEWDFFPYEQILDTMLHELCHNEFGPHNSDFYNLLEEIRKECEELMAKGI 127
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A1R3IMC1_COCAP (Zinc finger, RanBP2-type n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3IMC1_COCAP) HSP 1 Score: 150 bits (378), Expect = 2.060e-40 Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 160 ISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
+ D+ VWE+K +K +P + EAR++L+K+A QV+PI HKWKV LL EF PNNP LLGLNV G + +RLR P+ + FYP++ +L TMLHEL HN GPH+A+FY++ D+L EC++L+ +G+
Sbjct: 3 LGDLHKVWEVKALKRKPGEEEARKMLEKIAKQVQPIMKKHKWKVKLLSEFCPNNPALLGLNVGAGVHVKLRLRRPNRDWDFYPFDQVLDTMLHELCHNAHGPHNASFYKLWDELRKECEELMSKGI 128
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A2P5B3R5_PARAD (WLM domain containing protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5B3R5_PARAD) HSP 1 Score: 148 bits (373), Expect = 6.590e-40 Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 1
Query: 151 MPGISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
M + D+ VWE K +K +P + EAR +L+K+A QV+PI HKW+V LL EF PNNP LLGLNV +G ++ +RLR P+ E F+P++ IL TMLHEL HN GPH+ANFY++ D+L EC++LI +G+
Sbjct: 1 MNNVGDLNKVWETKALK-KPGEDEARRILEKVAKQVQPIMRKHKWRVKLLSEFYPNNPSLLGLNVGKGIQVKLRLRRPNREWDFFPFDQILDTMLHELCHNAHGPHNANFYKLWDELRQECEELIAKGI 128
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Match: A0A6J0KVH5_RAPSA (DNA-dependent metalloprotease WSS1-like isoform X2 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KVH5_RAPSA) HSP 1 Score: 147 bits (372), Expect = 8.020e-40 Identity = 65/129 (50.39%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 151 MPGISDMLGVWEIKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 537
M + D+ VWEIK +K +PR+ EAR++L+K+A+QV+PI KW+V LL EF P NP LLG+NVNRG ++ +RLR +++G F Y +L TMLHEL HN GPH+A+FY++ D+L EC++L+ +G+
Sbjct: 1 MMNLGDLNKVWEIKALKKKPREEEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLRRVNNDGDFISYHQVLDTMLHELCHNAHGPHNASFYKLWDELRKECEELMSKGI 129 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5902.16427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5902.16427.1 >prot_Ecto-sp13_S_contig5902.16427.1 ID=prot_Ecto-sp13_S_contig5902.16427.1|Name=mRNA_Ecto-sp13_S_contig5902.16427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp VLLSRRRISPLTHRPPVCQVYHRAAFPAHQDCVRLLVEQDGTRDRQIKRKback to top mRNA from alignment at Ecto-sp13_S_contig5902:8..2068- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5902.16427.1 ID=mRNA_Ecto-sp13_S_contig5902.16427.1|Name=mRNA_Ecto-sp13_S_contig5902.16427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5902:8..2068- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5902:8..2068- >mRNA_Ecto-sp13_S_contig5902.16427.1 ID=mRNA_Ecto-sp13_S_contig5902.16427.1|Name=mRNA_Ecto-sp13_S_contig5902.16427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5902:8..2068- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |