mRNA_Ecto-sp13_S_contig5896.16414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5896.16414.1
Unique NamemRNA_Ecto-sp13_S_contig5896.16414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5896.16414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5896contigEcto-sp13_S_contig5896:4747..6758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_005970.1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.431883-CDS-Ecto-sp13_S_contig5896:4746..49751681463819.431883-CDS-Ecto-sp13_S_contig5896:4746..4975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5896 4747..4975 +
1681463819.4488986-CDS-Ecto-sp13_S_contig5896:5384..54951681463819.4488986-CDS-Ecto-sp13_S_contig5896:5384..5495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5896 5385..5495 +
1681463819.459155-CDS-Ecto-sp13_S_contig5896:6492..67581681463819.459155-CDS-Ecto-sp13_S_contig5896:6492..6758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5896 6493..6758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5896.16414.1prot_Ecto-sp13_S_contig5896.16414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5896 4747..6758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5896.16414.1

>prot_Ecto-sp13_S_contig5896.16414.1 ID=prot_Ecto-sp13_S_contig5896.16414.1|Name=mRNA_Ecto-sp13_S_contig5896.16414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
QNRRQVGQVCVLEELLYRGHETKSYCTIIRPQLAHAAGAAHCCLVLSERE
THTGPHHHPLQHRSMEELRSNVGSNEDEDDYVYVLKKPTLVARGGLRGCT
YAEIDERKPPHHAGGRDRLFSEAMEVAFDHGLAHSSTLFESLRGLQTAST
DLREGYQSASAERTRVSAGGVQISWRGYLPPWAAVLWCVFIFLVFAVKRV
T*
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mRNA from alignment at Ecto-sp13_S_contig5896:4747..6758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5896.16414.1 ID=mRNA_Ecto-sp13_S_contig5896.16414.1|Name=mRNA_Ecto-sp13_S_contig5896.16414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2012bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5896:4747..6758+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACAGAAGACAAGTTGGACAGGTGTGCGTCCTCGAAGAGCTACTGTA
CCGTGGGCACGAAACGAAGAGCTACTGTACCATTATTCGTCCCCAGCTTG
CCCACGCGGCAGGCGCAGCGCACTGCTGTTTGGTTCTCAGTGAACGCGAG
ACACACACAGGCCCACACCACCACCCCCTGCAGCACAGGAGTATGGAGGA
GCTCAGGAGCAACGTCGGTTCGAATGAGGGTGAGAAAGTGTGACTAAATC
CTTATTTCCCCAGGAAGTCCGCGTTGTGAACCATGCTTCTCGTCCGTACC
GTTCCAAACACGTGGCGTTTGAATATAAACCTCGCTCAGGCGTTGACATA
TCCTGACGATATGGATATGGCGACGCGGCTTGTTGGTGTTCAACCATGAT
CTGACCGACAACAGCTGTACCGAACTGGAGCACAAGTTTAGGCTGCACAT
TTGATGTACATATGTCTGTGGCGGCGATTCGGTCTTTTAGTGTAATTGAC
TTAGTCTACCCACCCCTCATTTTTAACAAACTGCTGATGATGTCGACAGA
CCCACCGAAAATAATGTGTGTATGTAGGATAACAAGTCCCCTCCCTCGCC
GCCGCGCCCCCCCCGCACCGTTTTTCTCCGATTGCCAGATGAAGACGACT
ACGTATACGTGTTGAAGAAGCCCACACTCGTGGCACGTGGAGGCTTGCGA
GGATGTACCTATGCGGAAATAGACGAGCGCAAACCACCTCATCATGCAGG
TTGGCTGTGAAATAATCTTCTGTCTCACATCAAATGGTAGATCAATGGTA
TACCGCAGCAGCAGCAGTAGTATAGAGGGGGTCCCTGTTTTGTGCCGGTA
TGTGCCAAGAAAATTCACCGTTACCGTACCGGACCGGACCGGCAATACTC
AAAGTACTGACCATGGCTTGGAATTCAGTGTGCGTTCGCCAAAAACACCG
GCACCTTACCGTGCATTGGCACTACACTTCAAAGGGCACTAAAGAGGCCT
GTAGTTGCGGACTATTCGTTGCATCCTTCAAATGAAAATTGGCAGCACAA
TCTTCTCTCTGTCTCTAAAACCCTCGATATCGAACCGAGCAAATCTAGCT
TTTTGAAGTTTTCCTCGGCATGCAGTGCAGTTTGTGTGCCTGAAGAAACG
TGTAGTGCAAACGGAGGCTGACGTTAGGAAAAGAAAGGTGGGTCGACGAG
AAATCAAGGTCGCCATTTGTTTGAGTTTCTGACTGATTTTTTCCGCGTGG
TACTTCGCTGCCTCACCGGTTCTTCGTTGGCGGTCGACAACGCACGGGTA
ATGCTATAGGAATCGACGAGGACGGCAACTCCTCCAATGGCAGCACATGA
AACAAGTTTTTCAGAGATCTCTAGGGTCGTGTGGGGTATGATGACAAAAC
GCATCCATCCACAAAAAACACACTGGGGCCAACTCTAACAGGGGGGGGGG
GGGGGGGGGGGCTTCTTTTAAGACCTCTATACAACCCGGGTGAACTGAAG
TTTTTTCCACGCTCTGGTGCATTTGAGGAGGAGGGGGGTAATTCACAGGG
CAGGGGCAACTTCAAACAAGCCCACGTAAATATCGTGCATGATCGTACCC
CAATAATAATGCAGGGGCCTAGATATTTGGCGGCTGACTCACACCGTAGC
CATCTGGACGGAGCAAGCGCGCAACACGTTCGTTTTGTCTGACTGCGAAC
CGCGGGTAGATGTGCTCGATTTTATCCGCTGCTGGTGGTTTCGCAGGAGG
AAGAGACCGCCTGTTTTCGGAGGCAATGGAGGTGGCCTTCGATCATGGGC
TTGCCCATAGCAGCACACTGTTCGAGTCGTTGAGAGGCCTGCAGACGGCA
TCCACGGACTTGCGGGAAGGGTATCAGAGTGCGTCGGCCGAGAGAACCCG
AGTTTCGGCAGGAGGAGTGCAGATTTCTTGGCGGGGATACCTTCCCCCGT
GGGCTGCCGTGTTGTGGTGTGTCTTTATCTTCTTAGTCTTCGCAGTCAAA
CGTGTTACTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5896:4747..6758+

>mRNA_Ecto-sp13_S_contig5896.16414.1 ID=mRNA_Ecto-sp13_S_contig5896.16414.1|Name=mRNA_Ecto-sp13_S_contig5896.16414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5896:4747..6758+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACAGAAGACAAGTTGGACAGGTGTGCGTCCTCGAAGAGCTACTGTA
CCGTGGGCACGAAACGAAGAGCTACTGTACCATTATTCGTCCCCAGCTTG
CCCACGCGGCAGGCGCAGCGCACTGCTGTTTGGTTCTCAGTGAACGCGAG
ACACACACAGGCCCACACCACCACCCCCTGCAGCACAGGAGTATGGAGGA
GCTCAGGAGCAACGTCGGTTCGAATGAGGATGAAGACGACTACGTATACG
TGTTGAAGAAGCCCACACTCGTGGCACGTGGAGGCTTGCGAGGATGTACC
TATGCGGAAATAGACGAGCGCAAACCACCTCATCATGCAGGAGGAAGAGA
CCGCCTGTTTTCGGAGGCAATGGAGGTGGCCTTCGATCATGGGCTTGCCC
ATAGCAGCACACTGTTCGAGTCGTTGAGAGGCCTGCAGACGGCATCCACG
GACTTGCGGGAAGGGTATCAGAGTGCGTCGGCCGAGAGAACCCGAGTTTC
GGCAGGAGGAGTGCAGATTTCTTGGCGGGGATACCTTCCCCCGTGGGCTG
CCGTGTTGTGGTGTGTCTTTATCTTCTTAGTCTTCGCAGTCAAACGTGTT
ACTTAG
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