mRNA_Ecto-sp13_S_contig5886.16398.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5886.16398.1
Unique NamemRNA_Ecto-sp13_S_contig5886.16398.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: D8LER1_ECTSI (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.360e-42
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYFLGGAAITGGPVTVRGCGRDSVQGDV+FAEVLEKMGATLTWE NAMTVSRDLETPLRGVDVDC EIPDAAMTLAV
Sbjct:  329 ASYFLGGAAITGGPVTVRGCGRDSVQGDVRFAEVLEKMGATLTWEANAMTVSRDLETPLRGVDVDCGEIPDAAMTLAV 406
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A7S2UAI2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAI2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.120e-32
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYF+ GAAITGG VTVRGCG +SVQGDV FA V+E+MGAT+TW P+++TV+RD  T L+GVDVDC EIPDAAMTLAV
Sbjct:   64 ASYFIAGAAITGGTVTVRGCGSESVQGDVAFANVMEQMGATVTWAPDSITVTRDPNTKLKGVDVDCGEIPDAAMTLAV 141
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A836CIT3_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.870e-32
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYFLGGAAITGGPV V GCGR SVQGDV+FAEVLEKMGA LTWE +AMTVSR+    L+GVDVDC  IPDAAMTLAV
Sbjct:  258 ASYFLGGAAITGGPVRVVGCGRGSVQGDVQFAEVLEKMGAKLTWEEDAMTVSREPGVKLKGVDVDCGAIPDAAMTLAV 335
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: K0T8D0_THAOC (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8D0_THAOC)

HSP 1 Score: 123 bits (308), Expect = 3.000e-31
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYFL GAAITGG VTVRGCG +SVQGDV FA+V+E+MGAT+TW P ++TV+RD +T LRGVDVDC +IPDAAMTLAV
Sbjct:  336 ASYFLAGAAITGGTVTVRGCGSESVQGDVAFADVMEQMGATVTWAPESITVTRDPDTRLRGVDVDCGKIPDAAMTLAV 413
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A7S3TUR2_9SPIT (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUR2_9SPIT)

HSP 1 Score: 121 bits (304), Expect = 5.090e-31
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSR--DLETPLRGVDVDCAEIPDAAMTLA 232
            ASYF+GGAAITGGP+T+ GCG +SVQGDVKFA  +EKMGAT+ W+PN++TVSR  D   PL+GVD+DC EIPDAAMTLA
Sbjct:  262 ASYFIGGAAITGGPITILGCGSESVQGDVKFAHAIEKMGATIEWKPNSITVSRKTDGSQPLKGVDIDCGEIPDAAMTLA 340
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: B8BW66_THAPS (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW66_THAPS)

HSP 1 Score: 122 bits (305), Expect = 5.520e-31
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYFL GAAITGG VTVRGCG DSVQGDV FA V+E+MGAT+TW P ++T++RD  T L+GVDVDC +IPDAAMTLAV
Sbjct:  301 ASYFLAGAAITGGTVTVRGCGSDSVQGDVAFANVMEQMGATVTWAPESITITRDPNTKLKGVDVDCGKIPDAAMTLAV 378
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A813CZ13_POLGL (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813CZ13_POLGL)

HSP 1 Score: 121 bits (304), Expect = 6.280e-31
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSR--DLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYFLGGAAITGGPVTV GCG  SVQGD+KFA VLE+MG T+ W+PN++TVSR  D   PL+GVDVDC EIPDAAMTL V
Sbjct:  277 ASYFLGGAAITGGPVTVEGCGSTSVQGDIKFANVLEQMGCTVEWKPNSITVSRKTDGSQPLKGVDVDCGEIPDAAMTLTV 356
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A7S2KLB5_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLB5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.130e-30
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLAV 235
            ASYF+ GAAITGG VTVRGCG +SVQGDV FA+V+E+MGAT+TW P ++TV+RD +  L+GVDVDC EIPDAAMTLAV
Sbjct:  307 ASYFIAGAAITGGTVTVRGCGSESVQGDVAFADVMEQMGATVTWAPESITVTRDPDVKLKGVDVDCGEIPDAAMTLAV 384
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A7S1UKH8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.290e-30
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLETPLRGVDVDCAEIPDAAMTLA 232
            ASYFL G AITGGPVTV GCG +SVQGD +FAEVL KMGA + W PN++TVSRD+ TPL+GVD DC +IPDAAMTLA
Sbjct:  287 ASYFLAGGAITGGPVTVIGCGSESVQGDTRFAEVLGKMGAKVEWAPNSITVSRDMSTPLKGVDEDCGDIPDAAMTLA 363
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BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Match: A0A7S2LA12_9DINO (3-phosphoshikimate 1-carboxyvinyltransferase (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LA12_9DINO)

HSP 1 Score: 120 bits (301), Expect = 1.330e-30
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 2 
Query:    2 ASYFLGGAAITGGPVTVRGCGRDSVQGDVKFAEVLEKMGATLTWEPNAMTVSRDLE--TPLRGVDVDCAEIPDAAMTLAV 235
            ASYFL G AITGGPVTV GCG +SVQGDVKFA  +EKMGAT+ W+PN++TVSR L+   PL+G+DVDC EIPDAAMTL+V
Sbjct:  261 ASYFLAGGAITGGPVTVAGCGSESVQGDVKFAHCIEKMGATVEWKPNSITVSRKLDGTQPLKGIDVDCGEIPDAAMTLSV 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5886.16398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER1_ECTSI3.360e-4296.153-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2UAI2_9STRA1.120e-3274.36Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A836CIT3_9STRA4.870e-3280.773-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
K0T8D0_THAOC3.000e-3175.643-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S3TUR2_9SPIT5.090e-3172.153-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
B8BW66_THAPS5.520e-3174.363-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A813CZ13_POLGL6.280e-3175.003-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2KLB5_9STRA1.130e-3073.083-phosphoshikimate 1-carboxyvinyltransferase n=2 T... [more]
A0A7S1UKH8_9STRA1.290e-3074.033-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2LA12_9DINO1.330e-3072.503-phosphoshikimate 1-carboxyvinyltransferase (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5886contigEcto-sp13_S_contig5886:2278..3194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size236
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.823967-CDS-Ecto-sp13_S_contig5886:2277..23561681463817.823967-CDS-Ecto-sp13_S_contig5886:2277..2356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5886 2278..2356 +
1681463817.8360176-CDS-Ecto-sp13_S_contig5886:3037..31141681463817.8360176-CDS-Ecto-sp13_S_contig5886:3037..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5886 3038..3114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.8472104-UTR-Ecto-sp13_S_contig5886:3114..31941681463817.8472104-UTR-Ecto-sp13_S_contig5886:3114..3194Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5886 3115..3194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5886.16398.1prot_Ecto-sp13_S_contig5886.16398.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5886 2278..3114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5886.16398.1

>prot_Ecto-sp13_S_contig5886.16398.1 ID=prot_Ecto-sp13_S_contig5886.16398.1|Name=mRNA_Ecto-sp13_S_contig5886.16398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RLLFLGRRRHHRGARDCTRVRQGQRAGRRKIRRGAGEDGRDSDLGAKRHD
G*
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mRNA from alignment at Ecto-sp13_S_contig5886:2278..3194+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5886.16398.1 ID=mRNA_Ecto-sp13_S_contig5886.16398.1|Name=mRNA_Ecto-sp13_S_contig5886.16398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5886:2278..3194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTCCTATTTCTTGGGCGGCGCCGCCATCACCGGGGGGCCCGTGACTG
TACGCGGGTGCGGCAGGGACAGCGTGCAGGTAGGGCGCGAGGGATGGTGC
GCGAATGCTGGTGTGTGTTTCAGGGAAGGAAATATGGTCGAGACGTTTGC
GCCGTGGTAAGGAAGGCATGGGAAAGGACTGCTTTGCAAGGCGGGGCTGG
TCGGGCCAACTAGTAAAGACAATTGTGCGCAGAACGTGGCACATTTTCCC
TGAAGTTCTAAATGTGTCACGTCTTTATCGCATGGTGACATAAAAACGCT
AGCAGCACACAAGTCGAAGGTAAGGTGGAACGCAACCTATGTCCACGCCG
CATGCGTCCAGGGTGAACGGGTGTTGCACGTGTGTCGATGGTGAAAGCAC
GCACCGGGTGCTTGTATCCATTGTTGAGGTTCTTGACTTTTCTTGTGGTG
GGTTTGAGGCGAAACTAAAGGTGCTATCCAGTACTTGAAGGACGATCAAC
TTATTGTGCGGTTTGGATAGTATTCCCCTTAACTTTTTTCGAGCCCCATG
GAGGGCAGGGCCGAATCTGTGAAGCGTCGCAGTGCGTGCGCTGCACCCAG
TTCCTGCCATACCACTTTGCACATCTCCTTACACTAGTCTTAATTATGTT
TGGAAAATCGACCTCATGTCCTCTCTCTCTCTCTCTCCCCTCTCTCTTGC
ATCCAATGCTCATTCGTCGTTTTTTTTTCTACTCTTTTTGTCTCTCTCTC
TCTCCAACAGGGCGACGTAAAATTCGCCGAGGTGCTGGAGAAGATGGGCG
CGACTCTGACTTGGGAGCCAAACGCCATGACGGTTAGCAGGGACCTGGAA
ACCCCTCTCAGAGGCGTCGACGTGGACTGCGCGGAGATTCCGGACGCGGC
GATGACCCTTGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5886:2278..3194+

>mRNA_Ecto-sp13_S_contig5886.16398.1 ID=mRNA_Ecto-sp13_S_contig5886.16398.1|Name=mRNA_Ecto-sp13_S_contig5886.16398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5886:2278..3194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTCCTATTTCTTGGGCGGCGCCGCCATCACCGGGGGGCCCGTGACTG
TACGCGGGTGCGGCAGGGACAGCGTGCAGGGCGACGTAAAATTCGCCGAG
GTGCTGGAGAAGATGGGCGCGACTCTGACTTGGGAGCCAAACGCCATGAC
GGTTAG
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