mRNA_Ecto-sp13_S_contig58756.16383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58756.16383.1
Unique NamemRNA_Ecto-sp13_S_contig58756.16383.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: D8LT83_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT83_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.860e-26
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 VVTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR-CLSVGEEF 174
            VVTHPIDTVKSNLQGLSAGKYSGSLDCAR+IIASSGVSGLFRGLSPRICR CL +G +F
Sbjct:  231 VVTHPIDTVKSNLQGLSAGKYSGSLDCARKIIASSGVSGLFRGLSPRICRVCLEIGLQF 289
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7S3P360_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3P360_EUPCR)

HSP 1 Score: 64.3 bits (155), Expect = 9.770e-11
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 VTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICRCLSVGEEFG 177
            +  P+DT+K+NLQGL  G Y  S DCA++I+ + GV GL++GL PR+ R   VG E G
Sbjct:  206 INQPLDTIKTNLQGLKGGDYKNSFDCAKKILTNEGVLGLYKGLKPRMTR---VGIEVG 260
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7S0CXV1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXV1_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.620e-10
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VVTHPIDTVKSNLQGLSAGKYSGS-LDCARQIIASSGVSGLFRGLSPRICR 150
            VVT PIDTVK+N+Q LSA +Y  S L C R+I+  SG+ G +RGL PR+CR
Sbjct:  206 VVTQPIDTVKTNMQSLSADRYDRSILGCCREIVRQSGLVGFYRGLGPRLCR 256
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: W7T809_9STRA (Tricarboxylate transport mitochondrial-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T809_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.910e-10
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 VVTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICRC-LSVGEEF 174
            + THPIDTVKSN+Q LSA KY+ S +C   I+ + G+ GL++G++PR  R  L +G  F
Sbjct:  243 IATHPIDTVKSNMQSLSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVRVSLEIGLHF 301
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7S3JG27_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JG27_9SPIT)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-9
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    4 VTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR 150
            +  P+D +K+NLQGL+A K+ G++DCA+QI+   GV GL++G+ PR+ R
Sbjct:  217 INQPLDVIKTNLQGLNAHKFKGTVDCAKQIVRHEGVMGLYKGVKPRMAR 265
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7S3JEL4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JEL4_9SPIT)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-9
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 VVTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR-CLSVGEEF 174
            ++ +PID +K+++QGL A KY+G +DC +QI AS G+ G ++G+ PR+ R CL V   F
Sbjct:  193 MLNNPIDCIKTSVQGLDAHKYNGFVDCFKQIYASEGILGFYKGVGPRLARVCLDVAITF 251
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A6V3A8C4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A8C4_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   10 HPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICRCL 156
            HP+D VKS +QGL AG+Y G+LDC RQ+ A  G + L++G  PR  R +
Sbjct:  212 HPVDVVKSRMQGLDAGRYRGALDCLRQVAAEGGAAALYKGAGPRSARVM 260
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: R1DWR1_EMIHU (Mitochondrial citrate carrier n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DWR1_EMIHU)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 VVTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR-CLSVGEEF 174
            V++ PID V++N+  L A +YS SL CAR I+ S G+ GLF G+ PRICR C+    +F
Sbjct:  207 VLSQPIDVVRANMMSLDARRYSSSLACARAILRSGGLPGLFLGVGPRICRVCVEESLKF 265
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7J7QP42_9CHLO (Mitochondrial carrier n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QP42_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.710e-6
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   10 HPIDTVKSNLQ--GLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR 150
            +P+D +KS LQ    +  +YSG LDC RQ++A+ GV GLFRG  P + R
Sbjct:  273 YPLDAIKSKLQVDSYANPRYSGILDCGRQVVAAEGVKGLFRGFGPALAR 321
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BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Match: A0A7S0G5W0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5W0_9RHOD)

HSP 1 Score: 50.4 bits (119), Expect = 1.790e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    7 THPIDTVKSNLQGLSAGK-YSGSLDCARQIIASSGVSGLFRGLSPRI 144
            T P+D VK+ L   S+ + Y G+LDC RQ + + G+SGLFRG+ PR+
Sbjct:   10 TTPLDVVKTRLMTQSSTRTYQGALDCVRQTVQAEGISGLFRGVGPRV 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58756.16383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LT83_ECTSI1.860e-2689.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3P360_EUPCR9.770e-1150.00Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]
A0A7S0CXV1_9EUKA3.620e-1058.82Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
W7T809_9STRA5.910e-1049.15Tricarboxylate transport mitochondrial-like protei... [more]
A0A7S3JG27_9SPIT1.010e-948.98Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A7S3JEL4_9SPIT1.080e-945.76Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A6V3A8C4_HETAK1.440e-951.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1DWR1_EMIHU1.820e-949.15Mitochondrial citrate carrier n=1 Tax=Emiliania hu... [more]
A0A7J7QP42_9CHLO1.710e-648.98Mitochondrial carrier n=1 Tax=Scenedesmus sp. NREL... [more]
A0A7S0G5W0_9RHOD1.790e-648.94Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58756contigEcto-sp13_S_contig58756:428..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score107.5
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D8LT83
Preferred nameSLC25A1
Model size180
KEGG koko:K04646,ko:K15100
KEGG TC2.A.29.7
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015137,GO:0015142,GO:0015238,GO:0015318,GO:0015711,GO:0015746,GO:0015849,GO:0015893,GO:0016006,GO:0016020,GO:0016021,GO:0016051,GO:0018130,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0035674,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046390,GO:0046483,GO:0046942,GO:0046943,GO:0046949,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0055086,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1903825,GO:1905039,GO:1990542,GO:1990546
Exons1
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
Cds size180
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.6928713-CDS-Ecto-sp13_S_contig58756:427..6071681463816.6928713-CDS-Ecto-sp13_S_contig58756:427..607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58756 428..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58756.16383.1prot_Ecto-sp13_S_contig58756.16383.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58756 428..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58756.16383.1

>prot_Ecto-sp13_S_contig58756.16383.1 ID=prot_Ecto-sp13_S_contig58756.16383.1|Name=mRNA_Ecto-sp13_S_contig58756.16383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
VVTHPIDTVKSNLQGLSAGKYSGSLDCARQIIASSGVSGLFRGLSPRICR
CLSVGEEFG*
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mRNA from alignment at Ecto-sp13_S_contig58756:428..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58756.16383.1 ID=mRNA_Ecto-sp13_S_contig58756.16383.1|Name=mRNA_Ecto-sp13_S_contig58756.16383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58756:428..607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTGACGCATCCGATCGACACGGTCAAATCCAACCTTCAAGGTCTGTC
CGCGGGCAAGTACTCGGGTAGCCTTGACTGTGCCAGGCAGATCATAGCGT
CGTCTGGAGTAAGCGGTCTCTTCCGCGGGCTCTCCCCCCGAATTTGCAGG
TGCTTGTCTGTGGGTGAAGAGTTTGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58756:428..607+

>mRNA_Ecto-sp13_S_contig58756.16383.1 ID=mRNA_Ecto-sp13_S_contig58756.16383.1|Name=mRNA_Ecto-sp13_S_contig58756.16383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58756:428..607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTGACGCATCCGATCGACACGGTCAAATCCAACCTTCAAGGTCTGTC
CGCGGGCAAGTACTCGGGTAGCCTTGACTGTGCCAGGCAGATCATAGCGT
CGTCTGGAGTAAGCGGTCTCTTCCGCGGGCTCTCCCCCCGAATTTGCAGG
TGCTTGTCTGTGGGTGAAGAGTTTGGCTAA
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