mRNA_Ecto-sp13_S_contig58639.16360.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58639.16360.1
Unique NamemRNA_Ecto-sp13_S_contig58639.16360.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D7G217_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G217_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.240e-33
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            TCSETNF+EEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELI TTEV YYSFLQAGAHVVTVN
Sbjct:  264 TCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVGYYSFLQAGAHVVTVN 328
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 8.240e-32
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            TCSETNF+EEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELI TTEV YYS LQAGAHVVTVN
Sbjct:  436 TCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVWYYSSLQAGAHVVTVN 500
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D7FP36_ECTSI (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP36_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 7.250e-27
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            TC+ET+F+EEEVT+F+H+LHMHENGQRM+T QYR D +GNE L+ T +VEYYSFLQAGAHVV+VN
Sbjct:   32 TCTETHFEEEEVTVFSHLLHMHENGQRMLTRQYRTDSDGNEVLLHTADVEYYSFLQAGAHVVSVN 96
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.570e-25
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            TC+ET F+EEEVT+F+H+LHMHENGQR+ T QYR+DG+GNE LI T EVEYYSFLQAG HVVTVN
Sbjct:  405 TCTETYFEEEEVTVFSHLLHMHENGQRISTRQYRNDGDGNEVLIHTAEVEYYSFLQAGVHVVTVN 469
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 3.700e-24
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            +CSETNF+EEEVT+F H+LHMHENGQRMVT QYR+D +GNE LI T EVEYYS LQAG H+VT N
Sbjct:  418 SCSETNFEEEEVTVFIHMLHMHENGQRMVTRQYRNDSDGNEVLIHTAEVEYYSVLQAGGHLVTNN 482
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.250e-20
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    4 CSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            C+ET F+ E VT+++H LHMHENGQRM T QYR+D +GNE+L+  TEVEYYSFLQAG HV   N
Sbjct:  415 CTETYFEAESVTVYSHFLHMHENGQRMETRQYRNDSDGNEQLVDATEVEYYSFLQAGGHVTAHN 478
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BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Match: A0A6H5K5A3_9PHAE (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.940e-19
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    4 CSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVEYYSFLQAGAHVVTVN 195
            C+ET  + E VT+++H LHMH NGQRM T QYR D +GNE+L+  TEVEYYSFLQAG HV   N
Sbjct:   97 CTETYLEAESVTVYSHFLHMHGNGQRMETRQYRSDSDGNEQLVDATEVEYYSFLQAGGHVTAHN 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58639.16360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G217_ECTSI1.240e-3395.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G216_ECTSI8.240e-3293.85DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7FP36_ECTSI7.250e-2773.85Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
D7FP38_ECTSI1.570e-2576.92DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G337_ECTSI3.700e-2475.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD47_ECTSI1.250e-2065.63DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5A3_9PHAE3.940e-1962.50Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58639contigEcto-sp13_S_contig58639:81..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.5
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog2880.D7G217
Model size197
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
Cds size195
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.5134912-CDS-Ecto-sp13_S_contig58639:80..1041681463814.5134912-CDS-Ecto-sp13_S_contig58639:80..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58639 81..104 +
1681463814.5250323-CDS-Ecto-sp13_S_contig58639:639..8101681463814.5250323-CDS-Ecto-sp13_S_contig58639:639..810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58639 640..810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58639.16360.1prot_Ecto-sp13_S_contig58639.16360.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58639 81..810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58639.16360.1

>prot_Ecto-sp13_S_contig58639.16360.1 ID=prot_Ecto-sp13_S_contig58639.16360.1|Name=mRNA_Ecto-sp13_S_contig58639.16360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
TCSETNFQEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIQTTEVE
YYSFLQAGAHVVTVN
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mRNA from alignment at Ecto-sp13_S_contig58639:81..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58639.16360.1 ID=mRNA_Ecto-sp13_S_contig58639.16360.1|Name=mRNA_Ecto-sp13_S_contig58639.16360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58639:81..812+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTGCTCCGAGACAAACTTCCAGGTATGTAGGCGCAAACAGAGTTGTTG
TCGCTGTCTACCGCGGCTGCTGTTGTTGTTGTTGTTGGCTTGACATGAAA
ATTGTTCCGGTCCCCTGTATCTTCTTCTATCTGTACTAGTCCAACTGACG
CAGACGCTTTCCATCGTCACAGAGTGTGGGGTCTTCGTTCGGTGTGTACG
TGAGAGACGGCGCGCTTGTTTGTGGTCTGTGCTCTACGGGATCTGTCGGT
ATGTGATAGAAAGAAGGTGTTGATACGTCGGGGCCCCTCCTCGGTGCTCC
GCATGGCATTCTCACTACCTCTCTCTTCTCCGGGCGTGGGTAATATACGC
GCCGTATGAATGAACGACACATCTCTCTTCTCTTGAGGTGGCGCCCGTGC
GATGAACCGTTGCCCACGTGGCATGCCGGGGGGTTGTAACAATACCGATC
CTACCCACAAGTTCCTCCCTGCCTACCTCTTCCTTCTGTTTTATCTTCTC
ATCATGCTTGATATTCCGTCGCAACACGATATTCTTTGGTTTCTTTCGTT
GTTTCTCAGGAAGAGGAGGTTACCATCTTCAACCACGTGCTCCACATGCA
CGAGAACGGGCAGCGAATGGTGACACACCAGTATCGCGACGACGGCGAGG
GCAACGAGGAGCTGATCCAAACGACCGAAGTCGAGTACTACTCCTTCCTG
CAGGCCGGCGCGCACGTCGTAACCGTCAACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58639:81..812+

>mRNA_Ecto-sp13_S_contig58639.16360.1 ID=mRNA_Ecto-sp13_S_contig58639.16360.1|Name=mRNA_Ecto-sp13_S_contig58639.16360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58639:81..812+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTGCTCCGAGACAAACTTCCAGGAAGAGGAGGTTACCATCTTCAACCA
CGTGCTCCACATGCACGAGAACGGGCAGCGAATGGTGACACACCAGTATC
GCGACGACGGCGAGGGCAACGAGGAGCTGATCCAAACGACCGAAGTCGAG
TACTACTCCTTCCTGCAGGCCGGCGCGCACGTCGTAACCGTCAAC
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