mRNA_Ecto-sp13_S_contig5860.16355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5860.16355.1
Unique NamemRNA_Ecto-sp13_S_contig5860.16355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5860.16355.1 vs. uniprot
Match: D7FJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH1_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 7.320e-79
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:    1 TVHFNMASANANSGDWGWVLGGTDPSFTVQDAHDLIEEFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDPDTELAALQASTLSREYQYGSIEFYSAASGNLSIWYAVDEDYDFTMVHHYH 366
            T+HFNMAS+NANSGDWGWVLGGTDP+FTVQDAHDLI+EFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDPDTELAALQASTL+REYQYGSIEFYS ASGNLSIWYAVDEDYDF MVHHYH
Sbjct:  148 TIHFNMASSNANSGDWGWVLGGTDPTFTVQDAHDLIQEFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDPDTELAALQASTLNREYQYGSIEFYSVASGNLSIWYAVDEDYDFVMVHHYH 269
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BLAST of mRNA_Ecto-sp13_S_contig5860.16355.1 vs. uniprot
Match: A0A6H5JUL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.130e-77
Identity = 114/121 (94.21%), Postives = 120/121 (99.17%), Query Frame = 1 
Query:    1 TVHFNMASANANSGDWGWVLGGTDPSFTVQDAHDLIEEFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDPDTELAALQASTLSREYQYGSIEFYSAASGNLSIWYAVDEDYDFTMVHHY 363
            T+HFNMAS+NAN GDWGWVLGGTDP+FTVQDAHDLIEEFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDP+TELAALQASTL+REYQYGSIEFYSA+SGNLSIWYAVDEDYDFTMVHHY
Sbjct:  150 TIHFNMASSNANPGDWGWVLGGTDPNFTVQDAHDLIEEFGSSEVYARFSEGCWFYLGAAAVLDRPFLCSRDPNTELAALQASTLNREYQYGSIEFYSASSGNLSIWYAVDEDYDFTMVHHY 270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5860.16355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJH1_ECTSI7.320e-7994.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUL9_9PHAE1.130e-7794.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5860contigEcto-sp13_S_contig5860:8088..8453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-14_006340.2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.8988166-UTR-Ecto-sp13_S_contig5860:8087..81021681463813.8988166-UTR-Ecto-sp13_S_contig5860:8087..8102Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5860 8088..8102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.9088652-CDS-Ecto-sp13_S_contig5860:8102..84531681463813.9088652-CDS-Ecto-sp13_S_contig5860:8102..8453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5860 8103..8453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5860.16355.1prot_Ecto-sp13_S_contig5860.16355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5860 8103..8453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5860.16355.1

>prot_Ecto-sp13_S_contig5860.16355.1 ID=prot_Ecto-sp13_S_contig5860.16355.1|Name=mRNA_Ecto-sp13_S_contig5860.16355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MASANANSGDWGWVLGGTDPSFTVQDAHDLIEEFGSSEVYARFSEGCWFY
LGAAAVLDRPFLCSRDPDTELAALQASTLSREYQYGSIEFYSAASGNLSI
WYAVDEDYDFTMVHHYH
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mRNA from alignment at Ecto-sp13_S_contig5860:8088..8453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5860.16355.1 ID=mRNA_Ecto-sp13_S_contig5860.16355.1|Name=mRNA_Ecto-sp13_S_contig5860.16355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5860:8088..8453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGTTCACTTCAATATGGCCTCGGCCAACGCAAACTCGGGCGACTGGGG
CTGGGTTCTCGGCGGTACTGACCCAAGCTTCACGGTGCAGGACGCCCACG
ACTTGATCGAAGAATTCGGTTCGAGTGAAGTGTACGCCCGGTTCTCAGAA
GGGTGCTGGTTCTACCTCGGCGCAGCGGCAGTTCTTGACCGTCCTTTTCT
ATGTTCCCGGGATCCGGACACGGAATTGGCAGCGCTCCAAGCTTCCACGT
TGAGTAGGGAGTACCAGTACGGATCGATCGAGTTCTACAGCGCTGCCAGC
GGAAACTTGTCGATCTGGTATGCTGTCGACGAGGACTATGACTTCACCAT
GGTGCACCACTACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5860:8088..8453+

>mRNA_Ecto-sp13_S_contig5860.16355.1 ID=mRNA_Ecto-sp13_S_contig5860.16355.1|Name=mRNA_Ecto-sp13_S_contig5860.16355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5860:8088..8453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGGCCAACGCAAACTCGGGCGACTGGGGCTGGGTTCTCGGCGG
TACTGACCCAAGCTTCACGGTGCAGGACGCCCACGACTTGATCGAAGAAT
TCGGTTCGAGTGAAGTGTACGCCCGGTTCTCAGAAGGGTGCTGGTTCTAC
CTCGGCGCAGCGGCAGTTCTTGACCGTCCTTTTCTATGTTCCCGGGATCC
GGACACGGAATTGGCAGCGCTCCAAGCTTCCACGTTGAGTAGGGAGTACC
AGTACGGATCGATCGAGTTCTACAGCGCTGCCAGCGGAAACTTGTCGATC
TGGTATGCTGTCGACGAGGACTATGACTTCACCATGGTGCACCACTACCA
C
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