mRNA_Ecto-sp13_S_contig5856.16345.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5856.16345.1
Unique NamemRNA_Ecto-sp13_S_contig5856.16345.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: D7FSB4_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB4_ECTSI)

HSP 1 Score: 667 bits (1722), Expect = 6.980e-235
Identity = 418/431 (96.98%), Postives = 422/431 (97.91%), Query Frame = 1 
Query:    1 MSSFFGSRRAGNQQCRSGQQCSHGNCSSANASASFPAGGALGQSQGSNATTVQPGMELMPTLQQQPGGLAGLPLGGGAGAVGLMGVGNIEESLKGAPPDVLAAAERLSLIAPMMAGAGXXXXXXXXVMDMDGMTNVVRTAPGAESTDTGALSEATIASQLLVAVRTRDVVALRRLCSSTSEHLPAAVRRRDGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELVIYLSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDAAEYLVFEAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKLARTPTVWRAACETGEGLQGAGWPLPLNLVLM 1293
            MSSFFGSRRAGNQQCRSGQQCSHGNCSSANASASFPAGGALGQ QGSNATTVQPGMELMPTLQQQPGGLAGLP+GGGAGA GLMGVGNIEESLKGAPPDVLAAAERLSLIAPMMAGA XXXXXX  VMDMDGM NVVRTAPGAESTDTGALSEATIASQLLVAVRTRDV  LRRLCSSTSEHLPAA++RRDGQGHTLMHWAAKSGDVAMLELLANAGCP NEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELVIYLSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDAAEYLVFEAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKLARTPT+WRAACETGEGLQGAGWPLPLNLVLM
Sbjct:    1 MSSFFGSRRAGNQQCRSGQQCSHGNCSSANASASFPAGGALGQPQGSNATTVQPGMELMPTLQQQPGGLAGLPVGGGAGAGGLMGVGNIEESLKGAPPDVLAAAERLSLIAPMMAGAXXXXXXX--VMDMDGMANVVRTAPGAESTDTGALSEATIASQLLVAVRTRDVATLRRLCSSTSEHLPAALKRRDGQGHTLMHWAAKSGDVAMLELLANAGCPPNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELVIYLSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDAAEYLVFEAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKLARTPTLWRAACETGEGLQGAGWPLPLNLVLM 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A836CCL2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.710e-35
Identity = 151/412 (36.65%), Postives = 181/412 (43.93%), Query Frame = 1 
Query:  286 APPDVLAAAERLSLIAPMMAGAGXXXXXXXXVMDMDGMTNVVRTAPGAESTDTGALSEATIASQLLVAVRTRDVVALRRLCSST-SEHLPAAVRRRDGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTAL------------------VIAAQYGFVELVIYL----------------------------------------------SNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDAAEYLVFEAK-------ANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKLARTPTVWRAACETGE-------GLQGAGWPLPLNL 1284
            APP   AAA      AP              V     MT V+ T PG ESTD G      +  QL +AVR     A  ++     + +    ++  D  GH+LMHWAAKSGDV ++ELL  AG P    S+DPVGM P+HW  TEG L+A  WL   G AD + RD QGCT L                  VIAAQYGFVELVIYL                                               +               XXXXXXXXXXXXXXXXXXXXXX                   + DA EYLV EA        A+  A+DK  +TPLDLA+KK    +E FLRT  AG +   PA+ L+  R P + +  C  G+       G QGA WP  LN+
Sbjct: 1065 APPTSTAAAXXXXTGAPXXXXXRPNRPGVERVAAAMEMTEVITTVPGLESTDVGESDPEALMRQLYLAVRMGHAQAAGQVIEKLKNRNALDMLKEPDHDGHSLMHWAAKSGDVQLMELLLLAGSPLAVPSQDPVGMYPMHWTCTEGHLKALKWLRSRG-ADVDCRDRQGCTPLXXXXXXXXXXXXXXXXXVVIAAQYGFVELVIYLIKAGARADILDENADSPLHWAXXXXXXXXXXXXXXXXXXVMMLVNLGHDAYKGHTPVMVMLLKXXXXXXXXXXXXXXXXXXXXXXVDARDAHGQSPLHLAALRGHLDAVEYLVLEANYLVLDANADTQAKDKYEKTPLDLAVKKHMVDVEWFLRTQSAGGA-AKPAMLLECLRRPALIKTMCAMGQXXXXXXQGAQGALWPYILNV 1474
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A7S3JUV6_9STRA (Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUV6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.370e-19
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:  559 VRRRDGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYG 822
            +  RD  GHTL HW AK GDV +LEL+ + G P +E S D VGM PLHWA TEGRL   A LL   GAD + RD QGCT L+IA+Q+G
Sbjct:   61 IESRDEGGHTLTHWLAKRGDVHLLELVIDHGAPIDEASSDDVGMHPLHWACTEGRL-GCARLLAKRGADLDARDLQGCTPLIIASQWG 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A7S2PKX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKX7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.180e-18
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  580 GHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGA---DP-----EGRDNQGCTALVIAAQYGFVELVIYL 846
            GH+L HWA+K  D   LE+L+    P N  +KD VGM P+HWAATEG ++  +WL+   GA   DP     +  D+ GCTAL+IAAQYG  +LV +L
Sbjct:  132 GHSLAHWASKRPDTKALEILSKYNVPLNVPTKDKVGMYPIHWAATEGSIKIVSWLINHSGASAVDPNLNCLKATDSSGCTALLIAAQYGHADLVAFL 228
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: W7UCL7_9STRA (Palmitoyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCL7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.290e-15
Identity = 127/255 (49.80%), Postives = 148/255 (58.04%), Query Frame = 1 
Query:  517 RRLCSSTSEHLPAAVRRRDGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELVIYLSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDAAEYLVFEAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQ-SWLSPAVFLKLARTPTVWRAACETGEGLQGAGWPLPL 1278
            RR   S S  L A +  RDG GHT+ HWAAK GD+ ++ LLA+ G P  E S D VGM P+                   GAD + RD Q CT L+IAAQY            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EYLV +A A  + +D+   TP DLALKK Q  +  FL + G  + +W      L L      W+   + G   + + WP  L
Sbjct:  266 RRRALSPSSRLRAYLWERDGDGHTVTHWAAKRGDLELVSLLADKGAPLFEASTDSVGMQPIXXXXXXXXXXXXXXXX-RNGADLDARDKQLCTPLLIAAQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYLVLDADARTDRKDRNGSTPADLALKKGQRKVAAFLASHGLEKFNWRQ---LLSLQH----WKVWLQGGGNAEASAWPFYL 512
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A7S3KZW1_9STRA (Palmitoyltransferase n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZW1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.080e-6
Identity = 42/98 (42.86%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  583 HTLMHWAAKSGDVAML-ELLANAGCPTNEFSK--DPVGMSPLHWAATEG-RLRASAWLLGPGGADPEGR------DNQGCTALVIAAQYGFVELVIYL 846
            HT++HW+ K  D        A      N F+K  D  GM+PLHWA TEG  L    +L+  G   PE        D  GCT L+IAAQYG VE V YL
Sbjct:  168 HTILHWSCKRKDEPRFCHFWAQF---INVFNKTSDNTGMTPLHWAVTEGPNLPIIRFLIEEGKKQPEQPSLLEQVDASGCTPLLIAAQYGQVEAVAYL 262
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A365MK51_GIBIN (Uncharacterized protein n=1 Tax=Gibberella intermedia TaxID=948311 RepID=A0A365MK51_GIBIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-5
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  571 DGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAAT-----EGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELV 837
            + QG T +H+AAKSG +A ++LL  AG PT++  +D  G +P+H+ A      +  +R +  LL   GAD E +D  G T ++ A Q G V ++
Sbjct:  340 NSQGITALHFAAKSGSLACVKLLLEAGAPTSK--RDGYGRTPMHYLAWVNHEHQQEIRETIQLLQDYGADIESKDLNGITPILWACQKGNVSIL 431
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Match: A0A1L7VFF0_FUSPR (Related to endocytosis ankyrin repeat protein Nuc-2 n=2 Tax=Fusarium fujikuroi species complex TaxID=171627 RepID=A0A1L7VFF0_FUSPR)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-5
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  571 DGQGHTLMHWAAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAAT-----EGRLRASAWLLGPGGADPEGRDNQGCTALVIAAQYGFVELV 837
            + QG T +H+AAKSG +A ++LL  AG PT++  +D  G +P+H+ A      +  +R +  LL   GAD E +D  G T ++ A Q G V ++
Sbjct:  547 NSQGITALHFAAKSGSLACVKLLLEAGAPTSK--RDGYGRTPMHYLAWVNHEHQQEIRETIQLLQDYGADIESKDLNGITPILWACQKGNVSIL 638
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5856.16345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FSB4_ECTSI6.980e-23596.98Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836CCL2_9STRA4.710e-3536.65Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A7S3JUV6_9STRA1.370e-1957.95Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2PKX7_9STRA3.180e-1848.45Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7UCL7_9STRA3.290e-1549.80Palmitoyltransferase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3KZW1_9STRA4.080e-642.86Palmitoyltransferase n=2 Tax=Amphora coffeiformis ... [more]
A0A365MK51_GIBIN1.170e-537.23Uncharacterized protein n=1 Tax=Gibberella interme... [more]
A0A1L7VFF0_FUSPR1.320e-537.23Related to endocytosis ankyrin repeat protein Nuc-... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5856contigEcto-sp13_S_contig5856:4019..8531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score671.0
Seed ortholog evalue3.7e-190
Seed eggNOG ortholog2880.D7FSB4
Model size1293
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
Ec32 ortholog descriptionmembrane-localised ankyrin repeat palmitoyltransferase
Ec32 orthologEc-20_004890.1
EC2.3.1.225
Cds size1293
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5856.16345.1prot_Ecto-sp13_S_contig5856.16345.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5856 4019..8531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.1282809-CDS-Ecto-sp13_S_contig5856:4018..44741681463813.1282809-CDS-Ecto-sp13_S_contig5856:4018..4474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 4019..4474 +
1681463813.1393514-CDS-Ecto-sp13_S_contig5856:5167..53541681463813.1393514-CDS-Ecto-sp13_S_contig5856:5167..5354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 5168..5354 +
1681463813.1482804-CDS-Ecto-sp13_S_contig5856:5944..60871681463813.1482804-CDS-Ecto-sp13_S_contig5856:5944..6087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 5945..6087 +
1681463813.1568193-CDS-Ecto-sp13_S_contig5856:6658..67911681463813.1568193-CDS-Ecto-sp13_S_contig5856:6658..6791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 6659..6791 +
1681463813.1647599-CDS-Ecto-sp13_S_contig5856:7547..76811681463813.1647599-CDS-Ecto-sp13_S_contig5856:7547..7681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 7548..7681 +
1681463813.1744487-CDS-Ecto-sp13_S_contig5856:8001..80731681463813.1744487-CDS-Ecto-sp13_S_contig5856:8001..8073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 8002..8073 +
1681463813.1829245-CDS-Ecto-sp13_S_contig5856:8363..85311681463813.1829245-CDS-Ecto-sp13_S_contig5856:8363..8531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 8364..8531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5856.16345.1

>prot_Ecto-sp13_S_contig5856.16345.1 ID=prot_Ecto-sp13_S_contig5856.16345.1|Name=mRNA_Ecto-sp13_S_contig5856.16345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MSSFFGSRRAGNQQCRSGQQCSHGNCSSANASASFPAGGALGQSQGSNAT
TVQPGMELMPTLQQQPGGLAGLPLGGGAGAVGLMGVGNIEESLKGAPPDV
LAAAERLSLIAPMMAGAGVGGGGGGGVMDMDGMTNVVRTAPGAESTDTGA
LSEATIASQLLVAVRTRDVVALRRLCSSTSEHLPAAVRRRDGQGHTLMHW
AAKSGDVAMLELLANAGCPTNEFSKDPVGMSPLHWAATEGRLRASAWLLG
PGGADPEGRDNQGCTALVIAAQYGFVELVIYLSNHGCDPASVDSVGDSAL
HWAAYKGHVQVLSMLVKAGQDPEGEDVYGQTPLHLAALRGNRDAAEYLVF
EAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKL
ARTPTVWRAACETGEGLQGAGWPLPLNLVLM
back to top

mRNA from alignment at Ecto-sp13_S_contig5856:4019..8531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5856.16345.1 ID=mRNA_Ecto-sp13_S_contig5856.16345.1|Name=mRNA_Ecto-sp13_S_contig5856.16345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5856:4019..8531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGCTTTTTCGGCAGCAGACGAGCCGGCAACCAGCAGTGCCGCTC
GGGGCAGCAATGCAGCCATGGCAACTGCTCCTCCGCCAACGCCTCGGCCT
CCTTTCCCGCCGGGGGAGCTCTCGGCCAATCCCAAGGCAGCAACGCGACC
ACCGTCCAGCCGGGAATGGAACTGATGCCGACTTTGCAACAGCAGCCAGG
CGGGCTTGCCGGGCTGCCCCTCGGCGGCGGTGCCGGTGCCGTAGGGCTCA
TGGGGGTAGGCAACATCGAGGAGAGCCTGAAAGGAGCGCCGCCCGATGTA
TTGGCCGCAGCGGAGCGGCTCTCATTGATTGCTCCGATGATGGCCGGGGC
GGGGGTGGGCGGCGGCGGAGGCGGAGGCGTGATGGACATGGACGGTATGA
CCAACGTTGTGAGGACGGCGCCTGGGGCGGAGAGCACGGACACCGGCGCT
CTGAGTGTGAGTACAGGTGGCTTTGCGGCGAAAGTATTTTGCACGTATGT
AGCGTAGTATCATTGGTGTGGTGCTGGCCTGCCAGCCGATGTTTTCATGT
CTTGACGGCATGCGTGGGTGACAAAATTGATCGGGTGCCAACCCGATCAA
GATTGTACGCCTGTTGATGTAGATTAGACGCGTGCATACGTGTCTGAAGT
TCAGGCGACGAACCGAAAACAGCAGGTATAGCGATGACACCGCCGCCGCA
GTCCTGCCGTGGAACCTTTCGCGACATTCCACAGCAGCAGGCCGTCGACG
GGCTCCTTGTATTATCACAGTGTCGGCTACGGCGGCAAGGTTGACAGTTG
ACAGTCTCACGGTGCCGCAAGAAGCGCCGCCTTCGGAGAACGCGCTGTCT
CCCCTCCTCCTGGTGTGCCCTCCTCCCCAGTTGCTCTCCTGCCGTCCGCG
TCTCCCCTGTTACGTTGGAAAACGATCGTGCTATGTATTTATATCTACCG
TCAACACAAGTTCTCTTGCCAGACGATGGTCGAAGAAATTCTTCGCCGAA
ATGTAGATGTACATATTTTGGGTCGCGCCGTCACCGCGTAAGTTGCCTGC
TGGCTCCCAGCACCACTGGCTTGCGGACGTGACAAACCTCTCCGTCGGTC
GCCATGCGATTTGATTCGTCTTGGTACCGCTCACTGCTTACACCCGCAGG
AGGCGACGATTGCCAGCCAGCTGCTTGTGGCGGTACGCACAAGGGATGTG
GTCGCCCTGAGACGGCTGTGCTCCAGCACGTCCGAGCACCTGCCCGCCGC
TGTAAGGAGGAGGGACGGCCAGGGGCATACCCTCATGCACTGGGCGGCGA
AGTCCGGGGATGTGGCGATGCTCGAGCTCTTGGCTAGTGAGTATGGGGCT
GTGATGCGGTCGGTGTTGCTGACTTGTCTGTGGCGACAGCGTGCCTGTGT
GGTGCAGCATGCGACGAGCTCGAGGAGGAAGTGGGGGCACGATGTGTCGA
GAACAAGCTTGGACAACGTATCAAACTTTCTGATCTATGATACTGCTGTT
AAAGCGTAGACTAGACACTTTGAAAGTTCCCCCGTTGTCTATCGCTGTTG
TGTGCGTTGTTGTTGCGCAAATGCCATACGTACTGTGTACAGAGAGAGTA
GAAACCCAGTCCGCCGTACTACCGAAAGATTGCTCTTGAATAGAGGCTAC
TGTACTCCCACACGACGAATAGTAACGCCTAACGCAGCTTCGCTTTTGGT
GATGACAGCATTCCCTAGACCATGGCGAATACAACGATATCCCCTTCCAA
CATGGTACCTATTGATAGTTTGCTATTTGCCCGCCCAACTTGACCCCAGC
TGATTCGTCAGAAACGTACACCGAAGGGTGTCTAGACTGGCGCCGTAATA
GATGCGACGAACCTATGCAGTGTTGATGCTGTGTGCCATTGTTGTGACAA
TCGCGGTACTACTGCTGCTGTCGCAGACGCGGGGTGCCCCACGAACGAGT
TCAGCAAGGACCCCGTGGGTATGTCCCCACTCCACTGGGCGGCCACGGAA
GGTAGACTAAGAGCGTCGGCATGGCTTCTCGGGCCCGGAGGCGCGGACCC
AGAAGGCCGCGATAACCAGGTATGTACCGTGGAACAGACTGTATGGACCG
TAGAACAGACGGTATGGACCGTAAAACTGATAGTATGGACCGAAGAATAG
ACGGAATCGACCGTAGAACAGACGGCAAACTTGACCGTTGGTGTTTGCTG
TCGCTTTGGTGATGGAATTCAGCCGCTAACATGGGTAGCCTGGGCCGCGA
TAACGAGGCATGGTAAAACAGATCACATGCATGGAGCGTTGGGTTTCTGT
CTCTGGAATCGGCCGCTGTCGTGGTATGTGTGGTCTGGACCTTCCCTTCC
CTTCCTCCGCCCAACCGACGGAAGACCTTTCACGTGTGATTGATGGTGTC
ATGCAATTTAGTCCTGGTGGGATGAGAATCACGTAGATCCACGTACATGT
CTCCATGCAGCTTTGTGTCTCAACGGTTTCAGGATACTGTTTCGGTGGCG
GGGGTCGAATACTCCACACCACTTTATTATAGCAAACGTTTTTCGACTCG
TTTTCCCGATCTTGATGCAGCAACGCGTCCCCTATACCCCAACCGCCTCA
TTATTCTTTTTGGTGGTGGTGGTTTCATGTGTCTGGCCAGGGTTGCACGG
CACTCGTCATCGCGGCGCAGTACGGCTTCGTGGAGCTGGTGATATACTTG
AGCAATCACGGCTGTGACCCGGCGTCCGTTGATAGCGTGGGAGACTCCGC
GTTGCACTGGGCAGCCTACAAAGGTAGCACTAGTATTCTTGTGCACCTCG
CAGTCACAACAATGGCAGCCACATCAATGAGTTTCAATGGCGGTTACAGC
GCGCTGGAGTGCAGTAATGTGATGCTATGGTTTAGTCTGGGTGAAGGGTG
GCGCGGGGGAGATGCGCGCAGCTGGCGTACTCGTTTAGTGGCGTAGCGAC
GGTTTTGGCGTCGGAAGTATATGGTGGCGTGTGTCGTCGGATTTGGCTTG
ATTTTGATGAGAGGATGCACTGTATACATTTGTTGGTGTTGTCTTCGTCA
CAATGCTGTCATTATCAGTACAGTAATTGCTGTGTACCTGTAGCGTCTCA
ATGGAAAAGCGCTCCAAGCGAACCCGCCTCCTGTCAGAACATTTTCTCGC
GAATGAAAGAAGACCACGCGTTTATCATGAGTGCATTGGGTCATCTGATC
TACAGTCGGCGGTCCGCCATAACGGTACCCTCAATAGCGGAATGCCCTCT
ATAAGCGGCGCCGAAATCGCTTGGCACAGGCGCATTTCTCAGCACAATCC
CTATTAGGGATAACGGTACTGCCCCTCTGTAGCGGCACGAAAACCTCTTG
TCACTACCTTCCGCCATTGAGGACCGCCGACCGTACCTAGGAGGTACAAT
CGTTTGATGTCTGTCCTCGTTTTGATGCTGATGCACGAAGAAAGCAGGTC
TCATATGAATTTATTACGAGGTACTTCCACCATTTTCTCGTCTCTCCGCG
TCTTGATGGTATTGATGATGCAACGTTAGGTCATGTTCAGGTTCTGTCGA
TGCTGGTAAAGGCCGGTCAGGACCCCGAGGGAGAGGACGTGTACGGCCAG
ACTCCGCTGCACCTTGCCGCTCTGAGGGGGAACCGAGATGCGGCGGAATA
CCTTGTCTTCGAGGTAAGGCAGGCAGTCTGCCCGTGGCACGACCGTGCTG
GCGTTGTTTTTGGCGAGGAGATGACGTTGCTGGTGGTTACAGTAGCGTGC
TGGTGCTGATGCTTACCCCTCTGGACACAGCAGGCAAGCTCGTTGTCAAA
GAAAAGGCATTAATCGCGGGGGTGTACAAGGTTAGTCTTTTCATGACCTC
TCCGCCCTCCGGCTCCTTTGGTTCACCGCAAGTTTTCATCTACAAACAGT
GACCACGAGGTACATCACAAAACATTCATCGTACAAGAATCGAAGGCCGA
ACTTAGTCAAACCTTCTCTTGTTCCGTGGGCAGGCAAAAGCTAACGTGAA
CGCCAGAGATAAGAAGAACGAGACGCCGCTGGACCTCGCTCTCAAGAAGA
AGCAGGTGTGTGGTAGCAGTGCGGCACAAGGATCGAAGGCATCGCTTTTG
GCGCAAAGACTCAACCCAATCGAATGGAAGCAATCAAGCATCGAAGGCCA
TCGATGCCTACACGCAGATGTGTGTCGTCGGTTGGTTTGTTCCGTGTAAA
ATAGGTACAAGGCCACGACTGTCACGTCTTGCTCACCTGCATTTTTTCCT
CCCTCTCTCTCGCTCTCTCTTGCTCTCTCTCGCTCCCTCTCACCCCCTCT
CTCTCTCTACCGCCGGTGCTGCTGCTGCCGCTGCCCCTTCCCCAGTCTTC
CATGGAGCTGTTCTTGCGCACCAGTGGGGCCGGGCAGTCTTGGTTAAGCC
CCGCCGTGTTCCTCAAGCTTGCGCGCACTCCCACGGTGTGGAGGGCGGCG
TGCGAGACGGGGGAGGGGCTGCAGGGGGCCGGTTGGCCTCTACCTCTTAA
CCTCGTCTTGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5856:4019..8531+

>mRNA_Ecto-sp13_S_contig5856.16345.1 ID=mRNA_Ecto-sp13_S_contig5856.16345.1|Name=mRNA_Ecto-sp13_S_contig5856.16345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5856:4019..8531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGCTTTTTCGGCAGCAGACGAGCCGGCAACCAGCAGTGCCGCTC
GGGGCAGCAATGCAGCCATGGCAACTGCTCCTCCGCCAACGCCTCGGCCT
CCTTTCCCGCCGGGGGAGCTCTCGGCCAATCCCAAGGCAGCAACGCGACC
ACCGTCCAGCCGGGAATGGAACTGATGCCGACTTTGCAACAGCAGCCAGG
CGGGCTTGCCGGGCTGCCCCTCGGCGGCGGTGCCGGTGCCGTAGGGCTCA
TGGGGGTAGGCAACATCGAGGAGAGCCTGAAAGGAGCGCCGCCCGATGTA
TTGGCCGCAGCGGAGCGGCTCTCATTGATTGCTCCGATGATGGCCGGGGC
GGGGGTGGGCGGCGGCGGAGGCGGAGGCGTGATGGACATGGACGGTATGA
CCAACGTTGTGAGGACGGCGCCTGGGGCGGAGAGCACGGACACCGGCGCT
CTGAGTGAGGCGACGATTGCCAGCCAGCTGCTTGTGGCGGTACGCACAAG
GGATGTGGTCGCCCTGAGACGGCTGTGCTCCAGCACGTCCGAGCACCTGC
CCGCCGCTGTAAGGAGGAGGGACGGCCAGGGGCATACCCTCATGCACTGG
GCGGCGAAGTCCGGGGATGTGGCGATGCTCGAGCTCTTGGCTAACGCGGG
GTGCCCCACGAACGAGTTCAGCAAGGACCCCGTGGGTATGTCCCCACTCC
ACTGGGCGGCCACGGAAGGTAGACTAAGAGCGTCGGCATGGCTTCTCGGG
CCCGGAGGCGCGGACCCAGAAGGCCGCGATAACCAGGGTTGCACGGCACT
CGTCATCGCGGCGCAGTACGGCTTCGTGGAGCTGGTGATATACTTGAGCA
ATCACGGCTGTGACCCGGCGTCCGTTGATAGCGTGGGAGACTCCGCGTTG
CACTGGGCAGCCTACAAAGGTCATGTTCAGGTTCTGTCGATGCTGGTAAA
GGCCGGTCAGGACCCCGAGGGAGAGGACGTGTACGGCCAGACTCCGCTGC
ACCTTGCCGCTCTGAGGGGGAACCGAGATGCGGCGGAATACCTTGTCTTC
GAGGCAAAAGCTAACGTGAACGCCAGAGATAAGAAGAACGAGACGCCGCT
GGACCTCGCTCTCAAGAAGAAGCAGTCTTCCATGGAGCTGTTCTTGCGCA
CCAGTGGGGCCGGGCAGTCTTGGTTAAGCCCCGCCGTGTTCCTCAAGCTT
GCGCGCACTCCCACGGTGTGGAGGGCGGCGTGCGAGACGGGGGAGGGGCT
GCAGGGGGCCGGTTGGCCTCTACCTCTTAACCTCGTCTTGATG
back to top