mRNA_Ecto-sp13_S_contig58477.16329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58477.16329.1
Unique NamemRNA_Ecto-sp13_S_contig58477.16329.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: D8LF72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF72_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.500e-70
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 357
            IGTGWDQNLWAP KPLTRLDLDAALPDGRPCLLYRRCWH+AVVNTAALRAADIDPNKP S+GNDPPSA GVGAEGEQEEKSGA DGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR
Sbjct:  108 IGTGWDQNLWAPVKPLTRLDLDAALPDGRPCLLYRRCWHAAVVNTAALRAADIDPNKPWSLGNDPPSAAGVGAEGEQEEKSGAIDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 226          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A271J415_9BACT (Amidohydrolase n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J415_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 6.130e-11
Identity = 53/115 (46.09%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 IGTGWDQNLWAP--AKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITA 339
            +G GWDQN W    A P TR DLDAA PD RP  L R   H+   NTAALRAA IDP+ P       P+A   GA             V  DD GRPTG+F + +  LV  AI A
Sbjct:  124 MGRGWDQNDWGGDGAFP-TRQDLDAAFPD-RPVWLGRVDGHAGWANTAALRAAGIDPDAPA------PAAPEGGA-------------VIRDDQGRPTGVFVDAAEALVANAIPA 217          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A271JB13_9BACT (Amidohydrolase n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271JB13_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 1.140e-10
Identity = 50/112 (44.64%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    4 GTGWDQNLWAP--AKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAI 333
            G GWDQN W    A P TR DLDAA PD RP  L R   H+   NTAALRAA IDP+ P  +  +    GG                V VDD GRPTG+F + +  LV  A+
Sbjct:  127 GRGWDQNDWGGDGAFP-TRADLDAAFPD-RPVWLGRVDGHAGWANTAALRAAGIDPDAPAPMAPE----GGA---------------VLVDDQGRPTGVFVDAAEMLVAEAM 217          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: UPI00158ECC64 (amidohydrolase n=1 Tax=Bacillus sp. Marseille-Q1617 TaxID=2736887 RepID=UPI00158ECC64)

HSP 1 Score: 66.2 bits (160), Expect = 2.880e-10
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
             G GW++NLWA A+ +T+ +LDAA+P+  P LL R C H+ VVN+ AL+ A+ID + P     DP  AGG+               +E DD G   GL ++ +  L+  A+   S
Sbjct:  106 FGEGWNENLWAGAEVITKNELDAAVPN-HPVLLKRICRHAMVVNSLALKQANIDESTP-----DP--AGGL---------------IEKDDEGNLNGLLKDKAQDLMVEALPPIS 197          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A6G8YHL0_9GAMM (Amidohydrolase n=4 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A6G8YHL0_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 357
            +G GWDQN WA  +  +  DLDAA PD RP  L R   H+   N+AALRA    P +    G   P+ G +                E D AGRPTG+F + +M L++ AI A +   R
Sbjct:  127 LGNGWDQNRWADTRFPSAADLDAAFPD-RPVWLGRVDGHAGWGNSAALRALAAVPGQRTLQGRWQPAGGRI----------------ERDAAGRPTGVFVDEAMGLMQAAIPAPTAAAR 228          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: UPI001391D6DE (amidohydrolase n=1 Tax=Pseudoxanthomonas jiangsuensis TaxID=619688 RepID=UPI001391D6DE)

HSP 1 Score: 64.3 bits (155), Expect = 1.380e-9
Identity = 46/114 (40.35%), Postives = 54/114 (47.37%), Query Frame = 1
Query:    4 GTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
            G GWDQN W      T  DLDAA PD RP  L R   H+   N+AALRAA          G+  P  G +  EG                 GRPTG+F + +MRLVE A+ A S
Sbjct:  145 GWGWDQNRWPEQTFPTAADLDAAFPD-RPVWLLRIDGHAGWANSAALRAAATAEGARALEGDWQPDGGRIVREG-----------------GRPTGVFVDAAMRLVERAMPARS 240          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A7C6HDA8_9FIRM (Amidohydrolase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6HDA8_9FIRM)

HSP 1 Score: 63.5 bits (153), Expect = 2.540e-9
Identity = 45/118 (38.14%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEI 354
            +G GWDQ ++A  + LTR DLD A   GRP  L R C H AV +T AL  A I  +       DPP  GG                ++ D  G PTG+ RE ++ LV + I  AS E+
Sbjct:  110 LGRGWDQEVFAEKRYLTRKDLDEA-SGGRPVFLTRACGHIAVASTRALEIAGITRDA-----QDPP--GGA---------------IDRDAYGDPTGILRESALELVRSHIPPASREL 204          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A0V8HNK6_9BACI (Amidohydro_3 domain-containing protein n=3 Tax=Rossellomorea TaxID=2837508 RepID=A0A0V8HNK6_9BACI)

HSP 1 Score: 62.0 bits (149), Expect = 8.780e-9
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
             G GW++NLWA A+ +T+ +LD A+P+  P LL R C H+ VVN+ AL+ A+ID   P     DP   GG+               +E DD G   GL ++ +  L+  A+   S
Sbjct:  106 FGEGWNENLWAGAEVITKKELDDAVPN-HPVLLKRICRHAMVVNSLALKEANIDEETP-----DP--EGGL---------------IEKDDDGSLNGLLKDKAQDLMTAALPPIS 197          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A800J5Q3_9BACT (Amidohydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800J5Q3_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.650e-8
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:    4 GTGWDQNLWAP----AKPL-TRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEI 354
            G GWDQN W      + P  TR DLDAA PD RP  L R   H+  VN+AALRAA +DP+          +A     EG Q         +  D  GRPTG+  + +  LV +AI AA+ E+
Sbjct:  133 GRGWDQNDWEAQADGSHPFPTRADLDAAFPD-RPVALGRIDGHALWVNSAALRAAGLDPD----------AAAPADPEGGQ---------ILRDADGRPTGVLVDAAETLVTSAIPAATDEV 234          
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A3M1DDN7_9CHLR (Amidohydrolase (Fragment) n=1 Tax=Thermoflexia bacterium TaxID=2420334 RepID=A0A3M1DDN7_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 2.810e-8
Identity = 41/111 (36.94%), Postives = 55/111 (49.55%), Query Frame = 1
Query:    1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAI 333
            +G GW+Q  W   +  T  DLD+  P+  P LL  R  H+ V +T A+  A I P+ P     DPP  GG                +  D +GRPTGLF E +MRLV+ A+
Sbjct:  108 LGRGWNQEEWPDRRFPTAADLDSIAPE-HPVLLVARSGHALVASTRAMERAGIRPDTP-----DPP--GGH---------------IVRDASGRPTGLFLEDAMRLVQDAV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF72_ECTSI1.500e-7094.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A271J415_9BACT6.130e-1146.09Amidohydrolase n=1 Tax=Rubrivirga marina TaxID=119... [more]
A0A271JB13_9BACT1.140e-1044.64Amidohydrolase n=2 Tax=Bacteroidetes/Chlorobi grou... [more]
UPI00158ECC642.880e-1037.39amidohydrolase n=1 Tax=Bacillus sp. Marseille-Q161... [more]
A0A6G8YHL0_9GAMM1.370e-937.82Amidohydrolase n=4 Tax=Xanthomonadaceae TaxID=3203... [more]
UPI001391D6DE1.380e-940.35amidohydrolase n=1 Tax=Pseudoxanthomonas jiangsuen... [more]
A0A7C6HDA8_9FIRM2.540e-938.14Amidohydrolase n=1 Tax=Firmicutes bacterium TaxID=... [more]
A0A0V8HNK6_9BACI8.780e-935.65Amidohydro_3 domain-containing protein n=3 Tax=Ros... [more]
A0A800J5Q3_9BACT1.650e-840.16Amidohydrolase n=1 Tax=Bacteroidetes bacterium Tax... [more]
A0A3M1DDN7_9CHLR2.810e-836.94Amidohydrolase (Fragment) n=1 Tax=Thermoflexia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58477contigEcto-sp13_S_contig58477:489..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score233.8
Seed ortholog evalue4.2e-59
Seed eggNOG ortholog2880.D8LF72
Model size357
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
EggNOG OGs2QSHE@2759,COG1574@1
Cds size357
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.1957264-CDS-Ecto-sp13_S_contig58477:488..8451681463812.1957264-CDS-Ecto-sp13_S_contig58477:488..845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58477 489..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58477.16329.1prot_Ecto-sp13_S_contig58477.16329.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58477 489..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58477.16329.1

>prot_Ecto-sp13_S_contig58477.16329.1 ID=prot_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRA
ADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFR
EGSMRLVETAITAASFEIR
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mRNA from alignment at Ecto-sp13_S_contig58477:489..845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58477.16329.1 ID=mRNA_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58477:489..845- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGCACAGGCTGGGATCAGAACCTATGGGCGCCGGCAAAGCCCCTGAC GAGGCTCGATCTCGACGCGGCCTTACCCGACGGACGGCCTTGCCTCCTCT ACCGCCGATGTTGGCACTCCGCCGTCGTCAACACGGCTGCCCTGCGCGCC GCGGACATTGACCCGAACAAGCCGTGCTCCATCGGCAATGATCCGCCGTC TGCGGGGGGGGTCGGGGCAGAAGGGGAACAGGAGGAGAAATCGGGCGCGA GCGACGGTGTTGAGGTAGACGACGCCGGGCGCCCGACGGGGCTGTTTCGG GAAGGCTCGATGCGGCTCGTGGAGACCGCTATCACCGCGGCTTCTTTCGA GATCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58477:489..845-

>mRNA_Ecto-sp13_S_contig58477.16329.1 ID=mRNA_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58477:489..845- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGCACAGGCTGGGATCAGAACCTATGGGCGCCGGCAAAGCCCCTGAC
GAGGCTCGATCTCGACGCGGCCTTACCCGACGGACGGCCTTGCCTCCTCT
ACCGCCGATGTTGGCACTCCGCCGTCGTCAACACGGCTGCCCTGCGCGCC
GCGGACATTGACCCGAACAAGCCGTGCTCCATCGGCAATGATCCGCCGTC
TGCGGGGGGGGTCGGGGCAGAAGGGGAACAGGAGGAGAAATCGGGCGCGA
GCGACGGTGTTGAGGTAGACGACGCCGGGCGCCCGACGGGGCTGTTTCGG
GAAGGCTCGATGCGGCTCGTGGAGACCGCTATCACCGCGGCTTCTTTCGA
GATCAGG
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