mRNA_Ecto-sp13_S_contig58418.16320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58418.16320.1
Unique NamemRNA_Ecto-sp13_S_contig58418.16320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58418.16320.1 vs. uniprot
Match: D8LNJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ5_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.360e-115
Identity = 198/222 (89.19%), Postives = 201/222 (90.54%), Query Frame = 1 
Query:    1 MEYFQEYEVTFTTKPTFSLVEGADGRGALVSWDTGTAPRSADSSGAPAPVPPSGAAVISVSGESVAEKRLADVLELLEAAGKDLDIGREEGPAKGNGVKLSVEVPPDPAGGSGGGLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIGNLFQAKETAGSAVRDGSNVSVGGAGPSGAAAAAA-AVPDAFPLTFSAGSGTVEDLPFTMAEVVGGLGVIVAA 663
            MEYFQEYEVTFTTKPTFSLVEGADGRGA+VSWDTGTAP SADS GAPAPVPPSGAAVI+VSGESVAEK+LADVLELLEAAGKDLD GREE PAK NG KLSVEVPPDPAG    GLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIGNLFQAKETAGSAVRDGSNVS GGAGPS        AVPDAFPLTFS GS TVEDLPFTMAEVVGGLGVIVAA
Sbjct:  148 MEYFQEYEVTFTTKPTFSLVEGADGRGAVVSWDTGTAPPSADSGGAPAPVPPSGAAVIAVSGESVAEKKLADVLELLEAAGKDLDTGREEDPAKDNGDKLSVEVPPDPAGXXXXGLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIGNLFQAKETAGSAVRDGSNVSAGGAGPSAXXXXXXXAVPDAFPLTFSTGSETVEDLPFTMAEVVGGLGVIVAA 369
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58418.16320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ5_ECTSI1.360e-11589.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58418contigEcto-sp13_S_contig58418:48..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size665
Hectar predicted targeting categoryother localisation
Exons1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463811.269615-CDS-Ecto-sp13_S_contig58418:47..7101681463811.269615-CDS-Ecto-sp13_S_contig58418:47..710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58418 48..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58418.16320.1prot_Ecto-sp13_S_contig58418.16320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58418 48..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58418.16320.1

>prot_Ecto-sp13_S_contig58418.16320.1 ID=prot_Ecto-sp13_S_contig58418.16320.1|Name=mRNA_Ecto-sp13_S_contig58418.16320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MEYFQEYEVTFTTKPTFSLVEGADGRGALVSWDTGTAPRSADSSGAPAPV
PPSGAAVISVSGESVAEKRLADVLELLEAAGKDLDIGREEGPAKGNGVKL
SVEVPPDPAGGSGGGLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIG
NLFQAKETAGSAVRDGSNVSVGGAGPSGAAAAAAAVPDAFPLTFSAGSGT
VEDLPFTMAEVVGGLGVIVAA
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mRNA from alignment at Ecto-sp13_S_contig58418:48..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58418.16320.1 ID=mRNA_Ecto-sp13_S_contig58418.16320.1|Name=mRNA_Ecto-sp13_S_contig58418.16320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58418:48..710+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTACTTCCAAGAATACGAGGTTACCTTCACTACCAAGCCCACGTT
TTCGCTCGTGGAAGGGGCCGACGGGAGGGGTGCCTTAGTATCGTGGGACA
CCGGAACGGCACCACGCTCTGCGGACAGCAGCGGCGCCCCTGCCCCTGTG
CCGCCATCTGGTGCCGCTGTCATCTCCGTGTCCGGCGAGTCGGTAGCCGA
GAAGAGGCTGGCGGACGTGCTGGAGCTCCTGGAGGCTGCCGGCAAGGACC
TCGACATAGGGCGAGAAGAAGGTCCGGCCAAGGGTAATGGCGTCAAGCTT
TCCGTCGAGGTGCCTCCGGACCCGGCAGGCGGCAGCGGTGGCGGGCTGGT
GGTGCGGTTCCGCGAGAAGATGAAGCCGCAGCACGAGACCGGTTCGGCGG
GTGGGGAGGTGTTCCGCAACAAGATGAAGGCCATGGCGACGGGGATAGGG
AACCTGTTCCAGGCAAAGGAAACGGCGGGTAGCGCCGTGAGGGACGGCTC
CAACGTTTCGGTCGGAGGCGCGGGCCCGTCGGGGGCGGCGGCGGCGGCGG
CAGCGGTGCCCGATGCCTTCCCCCTGACGTTTTCAGCGGGGAGCGGGACC
GTCGAGGACTTGCCGTTTACGATGGCCGAGGTCGTCGGAGGCCTTGGGGT
TATCGTGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58418:48..710+

>mRNA_Ecto-sp13_S_contig58418.16320.1 ID=mRNA_Ecto-sp13_S_contig58418.16320.1|Name=mRNA_Ecto-sp13_S_contig58418.16320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58418:48..710+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTACTTCCAAGAATACGAGGTTACCTTCACTACCAAGCCCACGTT
TTCGCTCGTGGAAGGGGCCGACGGGAGGGGTGCCTTAGTATCGTGGGACA
CCGGAACGGCACCACGCTCTGCGGACAGCAGCGGCGCCCCTGCCCCTGTG
CCGCCATCTGGTGCCGCTGTCATCTCCGTGTCCGGCGAGTCGGTAGCCGA
GAAGAGGCTGGCGGACGTGCTGGAGCTCCTGGAGGCTGCCGGCAAGGACC
TCGACATAGGGCGAGAAGAAGGTCCGGCCAAGGGTAATGGCGTCAAGCTT
TCCGTCGAGGTGCCTCCGGACCCGGCAGGCGGCAGCGGTGGCGGGCTGGT
GGTGCGGTTCCGCGAGAAGATGAAGCCGCAGCACGAGACCGGTTCGGCGG
GTGGGGAGGTGTTCCGCAACAAGATGAAGGCCATGGCGACGGGGATAGGG
AACCTGTTCCAGGCAAAGGAAACGGCGGGTAGCGCCGTGAGGGACGGCTC
CAACGTTTCGGTCGGAGGCGCGGGCCCGTCGGGGGCGGCGGCGGCGGCGG
CAGCGGTGCCCGATGCCTTCCCCCTGACGTTTTCAGCGGGGAGCGGGACC
GTCGAGGACTTGCCGTTTACGATGGCCGAGGTCGTCGGAGGCCTTGGGGT
TATCGTGGCGGCG
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