mRNA_Ecto-sp13_S_contig58230.16293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58230.16293.1
Unique NamemRNA_Ecto-sp13_S_contig58230.16293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.220e-64
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.200e-61
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.060e-60
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRE+SRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 524
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.420e-59
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.520e-59
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.260e-59
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT T VDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACK+TDDYTKMKEVYLLRKKSD
Sbjct:  369 WHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSD 472
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 7.760e-59
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 8.560e-59
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLDILRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.270e-58
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSL+ILRKDT TGVDYRD+LSP GVCQI K KQSPHPKQ TRELSRPGQL+VID+MGPV  PA YKGGSFPYACKITDDYTKMKEVYLLR KSD
Sbjct:  309 WHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNKSD 412
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.730e-58
Identity = 95/104 (91.35%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQLTRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 312
            WHRRLGHLNARSLD LRKDT TGVDYRD+LSP GVCQIAK KQSPHPKQ TRELSRPGQL+VIDNMGPV  PAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD
Sbjct:  386 WHRRLGHLNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSD 489
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58230.16293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ34_9PHAE1.220e-6492.31Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCM0_9PHAE5.200e-6192.31Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KT84_9PHAE9.060e-6091.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE1.420e-5992.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE2.520e-5992.31Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVF6_9PHAE4.260e-5990.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE7.760e-5992.31Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE8.560e-5992.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KP59_9PHAE1.270e-5887.50CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8P7_9PHAE3.730e-5891.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58230contigEcto-sp13_S_contig58230:6..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.191862-CDS-Ecto-sp13_S_contig58230:5..3171681463809.191862-CDS-Ecto-sp13_S_contig58230:5..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58230 6..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58230.16293.1prot_Ecto-sp13_S_contig58230.16293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58230 6..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58230.16293.1

>prot_Ecto-sp13_S_contig58230.16293.1 ID=prot_Ecto-sp13_S_contig58230.16293.1|Name=mRNA_Ecto-sp13_S_contig58230.16293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
WHRRLGHLNARSLDILRKDTDTGVDYRDNLSPFGVCQIAKRKQSPHPKQL
TRELSRPGQLMVIDNMGPVKIPAKYKGGSFPYACKITDDYTKMKEVYLLR
KKSD
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mRNA from alignment at Ecto-sp13_S_contig58230:6..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58230.16293.1 ID=mRNA_Ecto-sp13_S_contig58230.16293.1|Name=mRNA_Ecto-sp13_S_contig58230.16293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58230:6..317- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCACAGGAGGCTTGGACATCTCAATGCTCGGAGCCTGGACATCCTTCG
GAAGGACACGGATACCGGGGTGGACTATCGCGACAATCTCTCCCCTTTCG
GGGTCTGCCAGATCGCGAAACGCAAGCAGTCCCCCCACCCGAAGCAATTG
ACTCGCGAACTATCACGGCCTGGACAGCTTATGGTCATCGACAACATGGG
GCCTGTTAAAATACCTGCGAAATATAAAGGAGGCTCCTTCCCGTACGCGT
GCAAGATCACCGACGACTACACGAAGATGAAAGAAGTGTACCTGCTTCGC
AAGAAATCTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58230:6..317-

>mRNA_Ecto-sp13_S_contig58230.16293.1 ID=mRNA_Ecto-sp13_S_contig58230.16293.1|Name=mRNA_Ecto-sp13_S_contig58230.16293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58230:6..317- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCACAGGAGGCTTGGACATCTCAATGCTCGGAGCCTGGACATCCTTCG
GAAGGACACGGATACCGGGGTGGACTATCGCGACAATCTCTCCCCTTTCG
GGGTCTGCCAGATCGCGAAACGCAAGCAGTCCCCCCACCCGAAGCAATTG
ACTCGCGAACTATCACGGCCTGGACAGCTTATGGTCATCGACAACATGGG
GCCTGTTAAAATACCTGCGAAATATAAAGGAGGCTCCTTCCCGTACGCGT
GCAAGATCACCGACGACTACACGAAGATGAAAGAAGTGTACCTGCTTCGC
AAGAAATCTGAC
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