mRNA_Ecto-sp13_S_contig5823.16292.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5823.16292.1
Unique NamemRNA_Ecto-sp13_S_contig5823.16292.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5823.16292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5823contigEcto-sp13_S_contig5823:5954..6852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size899
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.1451705-UTR-Ecto-sp13_S_contig5823:5953..63361681463809.1451705-UTR-Ecto-sp13_S_contig5823:5953..6336Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5823 5954..6336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.1542513-CDS-Ecto-sp13_S_contig5823:6336..68521681463809.1542513-CDS-Ecto-sp13_S_contig5823:6336..6852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5823 6337..6852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5823.16292.1prot_Ecto-sp13_S_contig5823.16292.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5823 6337..6852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5823.16292.1

>prot_Ecto-sp13_S_contig5823.16292.1 ID=prot_Ecto-sp13_S_contig5823.16292.1|Name=mRNA_Ecto-sp13_S_contig5823.16292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MLGRHRTMKREIRMVAAVPPSFQNEPSIILLSPDSQPASRNKVSRRERRT
GHSSCLLEKPPHRTPYNQIGATGSRRQNKQGHSPKTADKARTEKSSSSAF
EGSGDVFMPKYRHKVFEHNFVLKRQPKLSAPQGSVLAHLNLCQFASHHHD
LLNVAAAITWHEESNSYDGLE*
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mRNA from alignment at Ecto-sp13_S_contig5823:5954..6852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5823.16292.1 ID=mRNA_Ecto-sp13_S_contig5823.16292.1|Name=mRNA_Ecto-sp13_S_contig5823.16292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5823:5954..6852+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCTTTGAGTCAACTAGAGCACGTAGCAAGCTACCGGCGCACCGGAAC
ATCAATTTTAAATGCTACCAGTATCTAATGGCGCGCTTGAATCCCAACGC
ACCACCCTCTCCTCTTCCGCCGCAAACATCTTGCCACAACGCTATTACAT
CCCTGGCGTTGAGCTATCACAGCAGCACCGCGAACTACCTACATGCGCTC
GACATACGCCCCCCATACCCCAGCATGTGTACTATCGGACCCCTTGCGAC
GCTCCAGATCAGTGCAGTACTGAGTAGGAACAACAAGCGGCGCTCCCCTC
GGCAAACAAACACAACGCGAAATGCATGCCCGCCTTTGCGTTGACGTACG
CCCCCAAATAACGTAGAACGAACGGCGAACAACATGCTGGGCAGGCATCG
AACAATGAAACGGGAAATACGAATGGTAGCCGCGGTCCCTCCGTCCTTCC
AAAATGAACCTAGCATCATTTTGCTATCACCGGATTCACAACCTGCCAGC
CGCAACAAAGTATCAAGGCGTGAGAGACGGACTGGTCACAGTTCTTGCTT
ATTAGAGAAACCACCACATAGAACGCCCTACAACCAGATAGGCGCAACGG
GATCGAGGAGACAAAACAAGCAGGGACATTCTCCTAAAACCGCGGACAAG
GCACGTACCGAGAAATCCAGCAGCAGCGCGTTCGAGGGGAGTGGGGACGT
ATTTATGCCAAAATACAGACACAAGGTTTTCGAACACAACTTCGTTCTCA
AGCGACAACCAAAGCTCAGCGCGCCCCAGGGTTCAGTCCTGGCACACCTG
AATCTGTGCCAATTCGCCAGCCACCATCATGACCTCCTAAATGTTGCAGC
GGCCATCACCTGGCACGAAGAATCAAACAGCTACGATGGGCTCGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5823:5954..6852+

>mRNA_Ecto-sp13_S_contig5823.16292.1 ID=mRNA_Ecto-sp13_S_contig5823.16292.1|Name=mRNA_Ecto-sp13_S_contig5823.16292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5823:5954..6852+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGCAGGCATCGAACAATGAAACGGGAAATACGAATGGTAGCCGC
GGTCCCTCCGTCCTTCCAAAATGAACCTAGCATCATTTTGCTATCACCGG
ATTCACAACCTGCCAGCCGCAACAAAGTATCAAGGCGTGAGAGACGGACT
GGTCACAGTTCTTGCTTATTAGAGAAACCACCACATAGAACGCCCTACAA
CCAGATAGGCGCAACGGGATCGAGGAGACAAAACAAGCAGGGACATTCTC
CTAAAACCGCGGACAAGGCACGTACCGAGAAATCCAGCAGCAGCGCGTTC
GAGGGGAGTGGGGACGTATTTATGCCAAAATACAGACACAAGGTTTTCGA
ACACAACTTCGTTCTCAAGCGACAACCAAAGCTCAGCGCGCCCCAGGGTT
CAGTCCTGGCACACCTGAATCTGTGCCAATTCGCCAGCCACCATCATGAC
CTCCTAAATGTTGCAGCGGCCATCACCTGGCACGAAGAATCAAACAGCTA
CGATGGGCTCGAATGA
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