mRNA_Ecto-sp13_S_contig58094.16266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58094.16266.1
Unique NamemRNA_Ecto-sp13_S_contig58094.16266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A6H5KFN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN6_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.490e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 234
            SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR
Sbjct:   35 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 112
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: D8LQP2_ECTSI (Nonribosomal peptide synthetase 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP2_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.040e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 234
            SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR
Sbjct:  276 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 353
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A5D6XXF7_9STRA (Carrier domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXF7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.070e-29
Identity = 58/78 (74.36%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 234
            SSGTTG PKGICCPHRGAVHSY  RLVN PY+  DR A HVFFVWELLRPLLG         VPLYVIPDD IYDP R
Sbjct:  438 SSGTTGVPKGICCPHRGAVHSYDWRLVNCPYAPDDRVASHVFFVWELLRPLLGN--------VPLYVIPDDTIYDPVR 507
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A3M6VD90_9STRA (Carrier domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD90_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.320e-28
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSYH RL + PY E DR ACHVFFVWELLRP+LG          PLY+IPD+ IYDP
Sbjct:  441 SSGTTGIPKGICCPHRGAVHSYHWRLTHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYIIPDNAIYDP 508
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: M4BAS9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAS9_HYAAE)

HSP 1 Score: 115 bits (287), Expect = 4.270e-28
Identity = 53/76 (69.74%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSYH RL + P+ E DR ACHVFFVWELLRP+LG          PLY+IPD+ IYDP
Sbjct:  426 SSGTTGVPKGICCPHRGAVHSYHWRLTHCPFKEDDRVACHVFFVWELLRPMLGNR--------PLYIIPDNIIYDP 493
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A662Y028_9STRA (Carrier domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y028_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.560e-28
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRPLLG          PLYVIPDD I+DP
Sbjct:  441 SSGTTGVPKGICCPHRGAVHSYDWRLTHCPYKEDDRVACHVFFVWELLRPLLGNR--------PLYVIPDDTIFDP 508
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: W2R2G2_PHYPN (Carrier domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2R2G2_PHYPN)

HSP 1 Score: 114 bits (285), Expect = 8.500e-28
Identity = 54/78 (69.23%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 234
            SSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRP+LG          PLYVIPD  IYDP +
Sbjct:  440 SSGTTGVPKGICCPHRGAVHSYDWRLTHCPYKENDRVACHVFFVWELLRPMLGNR--------PLYVIPDSTIYDPAK 509
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A225VXN3_9STRA (L-aminoadipate-semialdehyde dehydrogenase large subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VXN3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.140e-27
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRP+LG          PLYVIPD+ IYDP
Sbjct:  440 SSGTTGVPKGICCPHRGAVHSYDWRLTHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYVIPDNTIYDP 507
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: A0A8J4S739_9STRA (Carrier domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4S739_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.160e-27
Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSY+ RL + PY E DR ACHVFFVWELLRP+LG          PLY+IPD  IYDP
Sbjct:  438 SSGTTGVPKGICCPHRGAVHSYNWRLTHCPYKEDDRMACHVFFVWELLRPMLGNR--------PLYIIPDSTIYDP 505
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BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Match: G5AF40_PHYSP (Carrier domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G5AF40_PHYSP)

HSP 1 Score: 114 bits (284), Expect = 1.160e-27
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 228
            SSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRP+LG          PLYVIPD+ IYDP
Sbjct:  436 SSGTTGVPKGICCPHRGAVHSYDWRLTHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYVIPDNTIYDP 503
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58094.16266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFN6_9PHAE5.490e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQP2_ECTSI1.040e-48100.00Nonribosomal peptide synthetase 10 n=1 Tax=Ectocar... [more]
A0A5D6XXF7_9STRA7.070e-2974.36Carrier domain-containing protein n=1 Tax=Pythium ... [more]
A0A3M6VD90_9STRA1.320e-2871.05Carrier domain-containing protein n=2 Tax=Peronosp... [more]
M4BAS9_HYAAE4.270e-2869.74Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662Y028_9STRA4.560e-2872.37Carrier domain-containing protein n=2 Tax=Nothophy... [more]
W2R2G2_PHYPN8.500e-2869.23Carrier domain-containing protein n=12 Tax=Phytoph... [more]
A0A225VXN3_9STRA1.140e-2771.05L-aminoadipate-semialdehyde dehydrogenase large su... [more]
A0A8J4S739_9STRA1.160e-2769.74Carrier domain-containing protein n=1 Tax=Phytopht... [more]
G5AF40_PHYSP1.160e-2771.05Carrier domain-containing protein n=6 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58094contigEcto-sp13_S_contig58094:502..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score175.3
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D8LQP2
Model size237
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG1020@1,KOG1178@2759
Cds size237
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463806.4748878-CDS-Ecto-sp13_S_contig58094:501..7381681463806.4748878-CDS-Ecto-sp13_S_contig58094:501..738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58094 502..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58094.16266.1prot_Ecto-sp13_S_contig58094.16266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58094 502..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58094.16266.1

>prot_Ecto-sp13_S_contig58094.16266.1 ID=prot_Ecto-sp13_S_contig58094.16266.1|Name=mRNA_Ecto-sp13_S_contig58094.16266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
SSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRP
LLGGMESAGGVAVPLYVIPDDHIYDPPR*
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mRNA from alignment at Ecto-sp13_S_contig58094:502..738-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58094.16266.1 ID=mRNA_Ecto-sp13_S_contig58094.16266.1|Name=mRNA_Ecto-sp13_S_contig58094.16266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58094:502..738- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCTGGAACCACGGGCGCGCCCAAGGGCATCTGCTGCCCCCACCGTGG
GGCCGTCCACTCGTACCACCATCGCCTCGTCAACTTCCCCTACAGCGAGG
GCGACAGGGAGGCCTGCCACGTCTTCTTCGTCTGGGAGCTGCTGAGACCG
CTCTTGGGCGGCATGGAGAGCGCCGGCGGTGTCGCGGTTCCGCTGTACGT
GATACCGGACGATCACATATATGACCCCCCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58094:502..738-

>mRNA_Ecto-sp13_S_contig58094.16266.1 ID=mRNA_Ecto-sp13_S_contig58094.16266.1|Name=mRNA_Ecto-sp13_S_contig58094.16266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58094:502..738- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCTGGAACCACGGGCGCGCCCAAGGGCATCTGCTGCCCCCACCGTGG
GGCCGTCCACTCGTACCACCATCGCCTCGTCAACTTCCCCTACAGCGAGG
GCGACAGGGAGGCCTGCCACGTCTTCTTCGTCTGGGAGCTGCTGAGACCG
CTCTTGGGCGGCATGGAGAGCGCCGGCGGTGTCGCGGTTCCGCTGTACGT
GATACCGGACGATCACATATATGACCCCCCCAGGTGA
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