mRNA_Ecto-sp13_S_contig5809.16264.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5809.16264.1
Unique NamemRNA_Ecto-sp13_S_contig5809.16264.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5809.16264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5809contigEcto-sp13_S_contig5809:2309..2720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size412
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463806.3670135-CDS-Ecto-sp13_S_contig5809:2308..27191681463806.3670135-CDS-Ecto-sp13_S_contig5809:2308..2719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 2309..2719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5809.16264.1prot_Ecto-sp13_S_contig5809.16264.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5809 2309..2719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5809.16264.1

>prot_Ecto-sp13_S_contig5809.16264.1 ID=prot_Ecto-sp13_S_contig5809.16264.1|Name=mRNA_Ecto-sp13_S_contig5809.16264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
GKDKNGKGQRVPTTMCWPLSYSVQVNVYRKASGFKSSCCLRAAVVRHQGH
HVVHQNTITRFVWGMTIHSSYLGSVNGEPRPHDAVKQARRHAPHEPRTPC
TIHPSLRSPFTSFVLWSQSKHHLFQNHFFYDAPPVSD
back to top

mRNA from alignment at Ecto-sp13_S_contig5809:2309..2720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5809.16264.1 ID=mRNA_Ecto-sp13_S_contig5809.16264.1|Name=mRNA_Ecto-sp13_S_contig5809.16264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5809:2309..2720+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAAGACAAAAATGGAAAAGGACAAAGAGTGCCGACAACTATGTGTTG
GCCGCTTTCGTATTCAGTACAAGTAAATGTTTATAGAAAAGCATCCGGCT
TCAAAAGCTCGTGTTGCTTGCGTGCAGCTGTCGTGCGTCACCAGGGTCAT
CATGTCGTCCACCAAAATACAATCACACGATTTGTTTGGGGCATGACTAT
TCATTCGTCCTATCTTGGGAGTGTGAATGGCGAGCCAAGGCCTCATGACG
CGGTAAAGCAAGCTCGGCGTCATGCTCCGCATGAACCACGGACCCCGTGC
ACCATCCACCCAAGCCTGCGCTCTCCGTTTACCTCCTTCGTATTATGGTC
ACAATCGAAACACCACCTCTTCCAAAATCACTTCTTCTATGATGCCCCTC
CTGTCTCTGATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5809:2309..2720+

>mRNA_Ecto-sp13_S_contig5809.16264.1 ID=mRNA_Ecto-sp13_S_contig5809.16264.1|Name=mRNA_Ecto-sp13_S_contig5809.16264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5809:2309..2720+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAAGACAAAAATGGAAAAGGACAAAGAGTGCCGACAACTATGTGTTG
GCCGCTTTCGTATTCAGTACAAGTAAATGTTTATAGAAAAGCATCCGGCT
TCAAAAGCTCGTGTTGCTTGCGTGCAGCTGTCGTGCGTCACCAGGGTCAT
CATGTCGTCCACCAAAATACAATCACACGATTTGTTTGGGGCATGACTAT
TCATTCGTCCTATCTTGGGAGTGTGAATGGCGAGCCAAGGCCTCATGACG
CGGTAAAGCAAGCTCGGCGTCATGCTCCGCATGAACCACGGACCCCGTGC
ACCATCCACCCAAGCCTGCGCTCTCCGTTTACCTCCTTCGTATTATGGTC
ACAATCGAAACACCACCTCTTCCAAAATCACTTCTTCTATGATGCCCCTC
CTGTCTCTGAT
back to top