mRNA_Ecto-sp13_S_contig10135.163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10135.163.1
Unique NamemRNA_Ecto-sp13_S_contig10135.163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: D8LF32_ECTSI (Imm upregulated 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF32_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.750e-47
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 2 
Query:    8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGDDGSSSCDPGYACVCDFEVEIDVDTSALVAGTASE 274
            MFGKVWALPLCTLMVAIFSASSAF QGSCSCGGPTS SVSTAT +NLIDPLECGDDG++SCD  YACVCDF +EI+VDTS LVAGTA+E
Sbjct:    1 MFGKVWALPLCTLMVAIFSASSAFGQGSCSCGGPTSGSVSTATISNLIDPLECGDDGTASCDSDYACVCDFGIEINVDTSGLVAGTATE 89
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BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.510e-17
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 2 
Query:    8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGD-DGSSSCDPGYACVCDFEVEIDVDTSALVAGT 265
            M+ KVW LPLCT+MVA FSAS AF Q +CSCGGPT DS S A     ID L+CG  DG++ C  G  CVC++++ IDVD  A +AGT
Sbjct:    1 MWAKVWILPLCTMMVATFSASFAFGQ-TCSCGGPTVDSPSVAD----IDVLQCGAADGTTDCG-GNICVCNYDISIDVDLVAFLAGT 81
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BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: D7G5L1_ECTSI (Imm upregulated 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.440e-14
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:    8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGDDGSS--SCDPGYACVCDFEVEIDV 238
            M+G+VW LPLCT++V I SA SA     CSCGGPTSD    A     ID LECG DG     CD G  CVC+   E+ V
Sbjct:    1 MWGRVWVLPLCTVIVVILSAPSA-SGAPCSCGGPTSD----APLDTAIDVLECGSDGDGPLQCDDGVVCVCNLSPEVAV 74
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BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5JZQ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.630e-14
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:    5 KMFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECG--DDGSSSC-DPGY-ACVCDFEVEIDVDTSALVAGTASE 274
            +M GK+W LPL T+MVAIFSA   F  G C+CGGPT    ST    ++ID + CG   +G  SC D G  AC+CD+ V I+VD    +AG A E
Sbjct:   46 RMRGKLWTLPLHTVMVAIFSAP--FVSGECACGGPTESQPST----DMIDVVSCGATTEGQKSCTDIGEKACLCDYTVSIEVDLIDFLAGEAEE 133
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BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.720e-14
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:    8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECG--DDGSSSC-DPG-YACVCDFEVEIDVDTSALVAGTASE 274
            M GK W LPL T+MVAIFSA   F  G C CGGPT    S    A +ID L CG   +G ++C D G  AC+CD+E+ IDVD    +AG A E
Sbjct:    1 MRGKFWTLPLHTVMVAIFSAP--FVSGECECGGPTMSEPS----AEMIDVLSCGATTEGQTTCTDLGEIACLCDYEISIDVDVRDFLAGAAEE 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LF32_ECTSI4.750e-4785.39Imm upregulated 7 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5K7V7_9PHAE1.510e-1757.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5L1_ECTSI4.440e-1451.90Imm upregulated 9 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JZQ2_9PHAE7.630e-1448.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Y1_9PHAE9.720e-1450.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10135contigEcto-sp13_S_contig10135:2728..3001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size276
Hectar predicted targeting categorychloroplast
Exons1
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.0506327-UTR-Ecto-sp13_S_contig10135:2727..27341681462510.0506327-UTR-Ecto-sp13_S_contig10135:2727..2734Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10135 2728..2734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.0605917-CDS-Ecto-sp13_S_contig10135:2734..30011681462510.0605917-CDS-Ecto-sp13_S_contig10135:2734..3001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10135 2735..3001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10135.163.1prot_Ecto-sp13_S_contig10135.163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10135 2735..3001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10135.163.1

>prot_Ecto-sp13_S_contig10135.163.1 ID=prot_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDP
LECGDDGSSSCDPGYACVCDFEVEIDVDTSALVAGTASE
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mRNA from alignment at Ecto-sp13_S_contig10135:2728..3001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10135.163.1 ID=mRNA_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10135:2728..3001+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAAGATGTTCGGCAAAGTCTGGGCCCTGCCGCTGTGCACACTGATGG
TGGCAATTTTCAGCGCATCATCCGCCTTCGAGCAGGGGTCTTGCTCTTGT
GGCGGACCTACCTCTGACTCGGTCAGTACTGCCACACATGCCAACCTTAT
CGATCCCTTGGAGTGCGGCGACGATGGTTCTTCCTCGTGTGACCCCGGCT
ACGCGTGCGTGTGCGACTTCGAGGTCGAGATTGATGTCGACACCAGCGCC
CTGGTCGCCGGCACCGCTTCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10135:2728..3001+

>mRNA_Ecto-sp13_S_contig10135.163.1 ID=mRNA_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10135:2728..3001+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCAAAGTCTGGGCCCTGCCGCTGTGCACACTGATGGTGGCAAT
TTTCAGCGCATCATCCGCCTTCGAGCAGGGGTCTTGCTCTTGTGGCGGAC
CTACCTCTGACTCGGTCAGTACTGCCACACATGCCAACCTTATCGATCCC
TTGGAGTGCGGCGACGATGGTTCTTCCTCGTGTGACCCCGGCTACGCGTG
CGTGTGCGACTTCGAGGTCGAGATTGATGTCGACACCAGCGCCCTGGTCG
CCGGCACCGCTTCGGAG
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