mRNA_Ecto-sp13_S_contig5797.16236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5797.16236.1
Unique NamemRNA_Ecto-sp13_S_contig5797.16236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: D8LH80_ECTSI (Acetyl-CoA acetyltransferase, putative mitochondrial presursor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH80_ECTSI)

HSP 1 Score: 748 bits (1931), Expect = 1.200e-269
Identity = 393/398 (98.74%), Postives = 396/398 (99.50%), Query Frame = 1
Query:   43 MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA 1236
            MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFET++Q GAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEK+AALRPVFKKDGVVTSATASGICDGAGSLLL GESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA
Sbjct:    1 MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETVVQ-GAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEKMAALRPVFKKDGVVTSATASGICDGAGSLLLAGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA 397          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A835ZH16_9STRA (Acetyl-CoA acetyltransferase, putative mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH16_9STRA)

HSP 1 Score: 541 bits (1394), Expect = 6.160e-188
Identity = 280/399 (70.18%), Postives = 333/399 (83.46%), Query Frame = 1
Query:   43 MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA 1236
            +AA  VFIVGAKRT FG+FGG+LS LSATDL V SSKAA+ SAG+  D IDATF GNVIQ+S DACYL+RH+ L+VGA V +PALTVNRLCGSGFET++Q GAEAIQ+G A VALC GAENMS+APL + G  ARWGV LG+GLK+EDSLWAGLTDS+AGLPMG+TAENL  +YGI+R+ C+EY++ SQ  W++G+A+GAF  EMAP+ V+ KKG + +DTDEHPRP +S +K+  LRPVFKKDGVVT+  +SGICDGAGSLL+  E AV   +L PLARVV+   VGCDP IMGIGP  A+R AL+ AGLTL DMDL+EVNEAFA QYLAVEKELGL+R   +T GGAIALGHPLGASGSRI+AHLTH+LRR+ L+YGVG ACIGGGQGIAV++EN +
Sbjct:    4 VAARKVFIVGAKRTPFGAFGGALSALSATDLGVISSKAAIESAGVSADAIDATFFGNVIQSSADACYLARHIGLRVGAPVASPALTVNRLCGSGFETVVQ-GAEAIQVGSARVALCGGAENMSNAPLSIGGVSARWGVPLGAGLKLEDSLWAGLTDSHAGLPMGLTAENLAKQYGISRDACDEYALRSQLLWAAGHASGAFEAEMAPVTVEGKKGARTIDTDEHPRPETSKDKLEKLRPVFKKDGVVTAGNSSGICDGAGSLLVASEDAVKDLKLEPLARVVSWGIVGCDPKIMGIGPAGAVRKALEAAGLTLKDMDLIEVNEAFAAQYLAVEKELGLDRDIVSTCGGAIALGHPLGASGSRILAHLTHKLRREKLRYGVGTACIGGGQGIAVILENTS 401          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: B8C459_THAPS (3-ketoacyl-coa thiolase, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C459_THAPS)

HSP 1 Score: 496 bits (1278), Expect = 1.930e-170
Identity = 256/396 (64.65%), Postives = 314/396 (79.29%), Query Frame = 1
Query:   52 SGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHE-LRRKGLKYGVGAACIGGGQGIAVVIENV 1233
            S +FIV AKRT FG+FGGSL  LSAT+L   S+KAAL SA I P L+DA + GNVIQ+SPDA YL+RHV LK G  + TPALT+NRLCGSGFET+IQ GA++I+L +AS+ +C G+ENMS APL V GNDARWGVALG GL M DSLW GLTD Y G PMG+TAENL ++YGITR+ C+E+++ SQ  W   + NG F  EMA +E++TKKGPK++ TDEHPRP +S+E+IA+LRPVFKKDGVVT+A ASGICDGAG+++L  E AV +  L PLAR+ + H  GCDP+IMGIGPV+AI+GAL+ AG+TLAD+D +E+NEAFA Q+LA  K L L+  KTN +GGAI+ GHPLGASGSRI AHL +E LR    K  VG+ACIGGGQGIAVV+E V
Sbjct:    2 SSIFIVAAKRTPFGAFGGSLKALSATELGAISTKAALSSANIDPSLVDAVYFGNVIQSSPDAAYLARHVGLKCGVPIPTPALTINRLCGSGFETVIQ-GAKSIKLNEASIVVCGGSENMSMAPLQVDGNDARWGVALGKGLTMRDSLWDGLTDKYVGTPMGITAENLAEQYGITRQDCDEFAIRSQQTWVKAHKNGVFDLEMANVEIETKKGPKIIGTDEHPRPDTSLEQIASLRPVFKKDGVVTAANASGICDGAGTIILASEEAVREHGLQPLARLASYHVSGCDPSIMGIGPVSAIKGALESAGMTLADVDRMEINEAFAAQFLACAKALELDMDKTNLHGGAISFGHPLGASGSRITAHLANEFLRTDAGKVHVGSACIGGGQGIAVVLERV 396          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A7S2V0D7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D7_9STRA)

HSP 1 Score: 494 bits (1271), Expect = 2.390e-169
Identity = 254/393 (64.63%), Postives = 308/393 (78.37%), Query Frame = 1
Query:   55 GVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEKIAALRPVFKKDGV-VTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIEN 1230
            G+F+V AKRT FG+FGGSL  LSAT+L V SSKAAL++A + P  +D T VGNVIQ+S DA YLSRHV LK G  +E PALT+NRLCGSGFE++IQ G E I LG+A VALC G ENMS+ P+V+ G  ARWGV LG G+K+EDSLW GLTD++AG PMG+TAENL DKYGITRE+C+EY+V SQ  W+  N    F  E+APIE+KT+KGP+ +DTDEHPR  S+EK+  L PVF+KDG  VT+A ASGICDGAG+++L  E AV +  LTPLAR+      GC P IMGIGP +AI  AL+ AG++L  +D VE+NEAFA QYLA EK+LGL+R KTN NGGAIALGHPL ASGSR+ AHLTH+L+R G K+ VG+ACIGGGQGIAVV+EN
Sbjct:    6 GIFVVAAKRTPFGAFGGSLKGLSATELCVHSSKAALLAANLNPSAVDVTVVGNVIQSSLDAAYLSRHVGLKCGVDIEKPALTINRLCGSGFESVIQ-GGEQILLGQADVALCGGTENMSACPMVLDGITARWGVGLGLGMKLEDSLWGGLTDTHAGTPMGITAENLADKYGITREECDEYAVRSQHAWAVANKEKRFDAELAPIEIKTRKGPQAVDTDEHPREVSLEKMGNLPPVFRKDGGRVTAANASGICDGAGTIVLASEDAVKEYNLTPLARLAGWSRTGCPPEIMGIGPASAIPKALESAGVSLNQVDRVEINEAFAAQYLACEKDLGLDREKTNVNGGAIALGHPLAASGSRLTAHLTHDLKRVGGKWAVGSACIGGGQGIAVVLEN 397          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A7S2Q0S1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q0S1_9STRA)

HSP 1 Score: 489 bits (1258), Expect = 2.000e-167
Identity = 248/393 (63.10%), Postives = 311/393 (79.13%), Query Frame = 1
Query:   58 VFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENV 1233
            +FIV AKRT FG+FGGSL +LSAT+L   +++AA+ SA I P+ IDA + GNVIQ+S D+ YL+RHV LK G  +  PALT+NRLCGSGFET+IQ GA++I+L +AS+ +C G+ENMS APL V GNDARWGV+LGSGLKM DSLW GLTD YAG PMG+TAENL +KY I+R+ C+E+++ SQ  W +   NG F  E+ PIEV+TKKG K++D DEHPRP +S+EKI++LRPVFKKDGVVT+A ASGICDGAG+++L  E AV +  L PLAR+ + H  GCDP+IMGIGPV AI+GAL   GLT+AD+D +E+NEAFA Q+LA  KEL L+  KTN NGGAI++GHPLG+SGSRI AHL +E +R      VG+ACIGGGQGIAVV+E V
Sbjct:    4 IFIVAAKRTPFGAFGGSLKKLSATELGYHATQAAINSANIDPNTIDAVYFGNVIQSSSDSAYLARHVGLKCGVPISAPALTINRLCGSGFETVIQ-GAKSIKLNEASIVVCGGSENMSMAPLQVDGNDARWGVSLGSGLKMRDSLWDGLTDQYAGTPMGITAENLAEKYNISRQDCDEFAIRSQQTWGNAQKNGVFDLEIGPIEVQTKKGTKIVDADEHPRPDTSLEKISSLRPVFKKDGVVTAANASGICDGAGAIILASEEAVKEHNLKPLARLASYHVAGCDPSIMGIGPVPAIKGALGSVGLTVADVDRMEINEAFAAQFLACAKELELDMTKTNLNGGAISIGHPLGSSGSRITAHLANEFQRNEGNIYVGSACIGGGQGIAVVLERV 395          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A7S3HEX1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEX1_9STRA)

HSP 1 Score: 488 bits (1257), Expect = 3.510e-167
Identity = 258/400 (64.50%), Postives = 308/400 (77.00%), Query Frame = 1
Query:   40 NMAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSS-VEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA 1236
            ++A   VFIVGAKRT FGSFGGSL  LSATDLAV SSKAA+  A I P+ ID T  GNVI +S D+ YLSRHV LK G  V  PALT+NRLCGSGFET+   GAEAIQLG +++ LC G ENMS AP+V+ G  AR+G ALG GLK ED+LWAGLTDSYA LPMG+TAENL  K+ ITRE+C+ Y + SQ  ++   A G FT+E+AP+EVK KKGP  +  DEHPRP+S +E +  L+ VFK++G VT+A+ASGICDGA SL++  E AV    LTPL RVVA   VGCDP+IMGIGPV AIRGAL+ + LTL DMDLVE+NEAFA QYLA EK+LGL+  K N NGGAIALGHPLGASG+RI+ HL+H+L R G  Y VGAACIGGGQGIAV+++N +
Sbjct:    2 SVAKKAVFIVGAKRTPFGSFGGSLKHLSATDLAVHSSKAAIAHAKISPEKIDETIFGNVIGSSLDSTYLSRHVGLKTGVPVHKPALTINRLCGSGFETVCI-GAEAIQLGNSNITLCGGTENMSQAPMVIDGLSARFGTALGKGLKAEDALWAGLTDSYAKLPMGLTAENLAVKFNITREECDAYGLRSQLLYAKALAAGVFTDEIAPVEVKGKKGPVTISADEHPRPNSKIEDLQKLKAVFKENGAVTAASASGICDGAASLVVASEEAVKANNLTPLTRVVAWCRVGCDPSIMGIGPVEAIRGALKASNLTLQDMDLVEINEAFAAQYLACEKDLGLDPTKCNVNGGAIALGHPLGASGARILTHLSHQLVRTGKTYAVGAACIGGGQGIAVILKNAS 400          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: UPI0014559993 (3-ketoacyl-CoA thiolase, mitochondrial-like n=2 Tax=Asteroidea TaxID=7588 RepID=UPI0014559993)

HSP 1 Score: 480 bits (1236), Expect = 4.460e-164
Identity = 247/393 (62.85%), Postives = 306/393 (77.86%), Query Frame = 1
Query:   55 GVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENV 1233
            G+F+V AKRT FG+FGG L  LS TDL   ++KAAL +  I P+++D+TFVGNV QTSPDA Y++RHVAL+ G   + PALTVNRLCGSGF++I+  GA+ I  G A V L  G ENMS AP  V G   R+G  LG  LK+EDSLWA LTD +   PMGMTAE LG KYG+TRE C+++S+LSQ RW   N  G F  EMAPIE+KT+KG +V+DTDEHPR +++E +A L PVF+K+G+V++  ASGICDGAG ++L  E AV +  LTPLAR+V+ H  GCDP+IMGIGPV A+R AL+KAGL++ADMDL EVNEAFA Q+LAV+KELGL+  KTNTNGGA+ALGHP+GASGSRI AHL HE+RR G KY VG+ACIGGGQGIAV++EN+
Sbjct:    6 GIFVVAAKRTPFGAFGGKLKDLSQTDLCEVAAKAALAAGNINPEIVDSTFVGNVAQTSPDAAYVARHVALRSGVSEDKPALTVNRLCGSGFQSIVS-GAQDILTGDAEVVLTGGTENMSMAPYTVRGT--RFGTKLGVDLKLEDSLWATLTDYHIKTPMGMTAEKLGAKYGLTREDCDKFSLLSQQRWKKANDEGRFKAEMAPIEIKTRKGVQVIDTDEHPRETTLESLAKLPPVFQKNGLVSAGNASGICDGAGVVILASEEAVAKHGLTPLARLVSYHVSGCDPSIMGIGPVPAVRRALEKAGLSIADMDLCEVNEAFAAQFLAVQKELGLDIEKTNTNGGAVALGHPVGASGSRITAHLAHEIRRVGGKYAVGSACIGGGQGIAVILENM 395          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A482SQX9_9ARCH (Thiolase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQX9_9ARCH)

HSP 1 Score: 476 bits (1226), Expect = 1.740e-162
Identity = 244/400 (61.00%), Postives = 308/400 (77.00%), Query Frame = 1
Query:   40 NMAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA 1236
            ++A   VFIVGAKRT FG+FGG L ++ ATDLA  S+KAAL  A + PD +D TF GNVI +S D+ YL+RH +LK G  +++PA+ +NRLCGSGFET+   GAEAI LG++ + LC G ENMS AP+ + G  ARWG ALG GL  ED+LWAGLTDSYA LPMG+TAE LG +YGITREQC+E+ + SQ  +++ +A G F  E+  +EVK KKG + +  DEHPRP S++  +  L+PVFK++G+VT+ TASGICDGAG+L+L  E +V  + L PL+RVVA   VGCDP+IMGIGPV AIR  L+   LTL D+DL+E+NEAFA QYLA EKELGL+R K NTNGGAIA+GHPLGASGSRI+AHLTHE+ R   KY +G+ACIGGGQGIAV++ENV+
Sbjct:    2 SVAQKAVFIVGAKRTPFGAFGGKLKQIGATDLASLSAKAALAQANVTPDKVDETFFGNVIGSSLDSAYLARHASLKAGVPIKSPAMNINRLCGSGFETVCL-GAEAILLGRSKINLCGGTENMSQAPMQIDGLSARWGAALGKGLHAEDALWAGLTDSYAKLPMGLTAEKLGAQYGITREQCDEFGLRSQQLYAAAHAKGIFKAEIGEVEVKGKKGMEKVADDEHPRPKSALGDLQKLKPVFKENGLVTAGTASGICDGAGTLVLADEGSVKSQNLKPLSRVVAWSRVGCDPSIMGIGPVEAIRNVLKATNLTLNDIDLIEINEAFAAQYLACEKELGLDRNKCNTNGGAIAVGHPLGASGSRILAHLTHEMIRLNKKYSIGSACIGGGQGIAVLLENVS 400          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: UPI001CFB1B37 (3-ketoacyl-CoA thiolase, mitochondrial n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB1B37)

HSP 1 Score: 473 bits (1216), Expect = 4.940e-161
Identity = 247/393 (62.85%), Postives = 304/393 (77.35%), Query Frame = 1
Query:   55 GVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIEN 1230
            GVFIV AKRT FG++GG L   SATDLA  +S+AAL ++ + P+L+++  +GNV+QTS DA YL+RHV L+VG  V  PAL VNRLCGSGF+ I+  GA+ I L ++ + LC G+ENMS AP  V   + R+G  LG  +K+ED+LWAGLTD +  LPM +TAENL  KY I+RE C+ Y++ SQ RW +G  +G FT E+APIEVK+KKG + M  DEHPRP S++E++A L PVFKKDG VT+  ASG+CDGA +L++  E AV Q +LTPLAR+VA H  GCDP+IMGIGPV AI+GAL KAGLTL DMDLVEVNEAFA QYLAVEKE+GL+  KTN NGGAIALGHPL ASG+RI  HLTHELRR G KY +G+ACIGGGQGIAV+IEN
Sbjct:    6 GVFIVSAKRTPFGTYGGLLKDHSATDLAEHASRAALTASKVAPELVNSIIMGNVLQTSSDAIYLARHVGLRVGVPVPVPALIVNRLCGSGFQAIVC-GAQEICLKESEIVLCGGSENMSQAPYAV--RNIRFGTRLGEDIKLEDTLWAGLTDPHVKLPMALTAENLAQKYKISREDCDRYALQSQQRWKAGQDSGHFTAELAPIEVKSKKGKQTMSQDEHPRPQSTLEQMAKLPPVFKKDGTVTAGNASGVCDGAAALVIASEEAVIQHKLTPLARIVAYHACGCDPSIMGIGPVPAIKGALNKAGLTLNDMDLVEVNEAFAPQYLAVEKEMGLDPAKTNLNGGAIALGHPLAASGARITGHLTHELRRHGGKYALGSACIGGGQGIAVIIEN 395          
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Match: A0A7S4I2J6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I2J6_9STRA)

HSP 1 Score: 472 bits (1214), Expect = 9.920e-161
Identity = 243/392 (61.99%), Postives = 305/392 (77.81%), Query Frame = 1
Query:   58 VFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGP-KVMDTDEHPRP-SSVEKIAALRPVFKKDGVVTSATASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIE 1227
            +F+V AKRT FG+FGG L  L++TDL V ++++AL   GI P L+D+ F GN IQ+SPDA YL+RHVAL+ GA V TPALT+NRLCGSGFETI Q  A  ++LG++ +A+  G+ENMS+APL   GND RWGV LG GL+M D+LW GLTD+YAG PMG+TAENLG+KY I+R++C+E+++ SQ  W      G F  EMAP+EVK +KG  +V+DTDEHPRP S++EK++ L+PVFKKDG+VT+A ASGICDGAGS++L  E AV +  LTPLARV + +  GCDP IMGIGP  AIRGAL +AGLTL D+D +E+NEAFA Q LA  KEL L+  KTN +GGAIALGHPL ASGSRI+AHL +E +R   K  VG+ACIGGGQGIAVV+E
Sbjct:    5 IFVVAAKRTPFGAFGGELKSLTSTDLGVIATQSALSEGGIDPSLVDSVFFGNCIQSSPDAAYLARHVALRSGAPVSTPALTINRLCGSGFETIAQ-AANLMKLGESKIAVAGGSENMSAAPLQADGNDVRWGVGLGKGLQMRDALWDGLTDTYAGTPMGVTAENLGEKYNISRQECDEFAIRSQQTWGKAKEAGVFDLEMAPVEVKGRKGKTEVVDTDEHPRPDSTLEKLSKLKPVFKKDGLVTAANASGICDGAGSVVLATEEAVAEHGLTPLARVASYYVTGCDPTIMGIGPAPAIRGALDRAGLTLRDVDRIEINEAFAAQALACAKELDLDMEKTNVHGGAIALGHPLAASGSRIVAHLANEFQRTDGKIHVGSACIGGGQGIAVVLE 395          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5797.16236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH80_ECTSI1.200e-26998.74Acetyl-CoA acetyltransferase, putative mitochondri... [more]
A0A835ZH16_9STRA6.160e-18870.18Acetyl-CoA acetyltransferase, putative mitochondri... [more]
B8C459_THAPS1.930e-17064.653-ketoacyl-coa thiolase, mitochondrial n=1 Tax=Tha... [more]
A0A7S2V0D7_9STRA2.390e-16964.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2Q0S1_9STRA2.000e-16763.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3HEX1_9STRA3.510e-16764.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00145599934.460e-16462.853-ketoacyl-CoA thiolase, mitochondrial-like n=2 Ta... [more]
A0A482SQX9_9ARCH1.740e-16261.00Thiolase family protein n=1 Tax=archaeon TaxID=190... [more]
UPI001CFB1B374.940e-16162.853-ketoacyl-CoA thiolase, mitochondrial n=1 Tax=Pro... [more]
A0A7S4I2J6_9STRA9.920e-16161.99Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5797contigEcto-sp13_S_contig5797:2..4943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score756.5
Seed ortholog evalue6.2e-216
Seed eggNOG ortholog2880.D8LH80
Model size1627
KEGG rclassRC00004,RC00326,RC00405,RC01702
KEGG koko:K07508
KEGG ReactionR00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathwayko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG ModuleM00085,M00087
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.negative regulation of mitochondrial membrane permeability involved in apoptotic process
EggNOG OGsCOG0183@1,KOG1391@2759
Ec32 ortholog descriptionAcetyl-CoA acetyltransferase, putative mitochondrial presursor
Ec32 orthologEc-24_000870.1
EC2.3.1.16
Cds size1197
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5797.16236.1prot_Ecto-sp13_S_contig5797.16236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5797 520..4901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.0127223-UTR-Ecto-sp13_S_contig5797:1..2911681463803.0127223-UTR-Ecto-sp13_S_contig5797:1..291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5797 2..291 -
1681463803.0332584-UTR-Ecto-sp13_S_contig5797:421..5191681463803.0332584-UTR-Ecto-sp13_S_contig5797:421..519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5797 422..519 -
1681463803.1493673-UTR-Ecto-sp13_S_contig5797:4901..49431681463803.1493673-UTR-Ecto-sp13_S_contig5797:4901..4943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5797 4902..4943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.0463135-CDS-Ecto-sp13_S_contig5797:519..7591681463803.0463135-CDS-Ecto-sp13_S_contig5797:519..759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 520..759 -
1681463803.056789-CDS-Ecto-sp13_S_contig5797:1268..14461681463803.056789-CDS-Ecto-sp13_S_contig5797:1268..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 1269..1446 -
1681463803.0674672-CDS-Ecto-sp13_S_contig5797:1717..18451681463803.0674672-CDS-Ecto-sp13_S_contig5797:1717..1845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 1718..1845 -
1681463803.0779548-CDS-Ecto-sp13_S_contig5797:2237..23691681463803.0779548-CDS-Ecto-sp13_S_contig5797:2237..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 2238..2369 -
1681463803.089726-CDS-Ecto-sp13_S_contig5797:2598..27131681463803.089726-CDS-Ecto-sp13_S_contig5797:2598..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 2599..2713 -
1681463803.1063495-CDS-Ecto-sp13_S_contig5797:2886..29901681463803.1063495-CDS-Ecto-sp13_S_contig5797:2886..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 2887..2990 -
1681463803.1178458-CDS-Ecto-sp13_S_contig5797:3654..37691681463803.1178458-CDS-Ecto-sp13_S_contig5797:3654..3769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 3655..3769 -
1681463803.1279418-CDS-Ecto-sp13_S_contig5797:4450..45551681463803.1279418-CDS-Ecto-sp13_S_contig5797:4450..4555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 4451..4555 -
1681463803.1381156-CDS-Ecto-sp13_S_contig5797:4821..49011681463803.1381156-CDS-Ecto-sp13_S_contig5797:4821..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5797 4822..4901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5797.16236.1

>prot_Ecto-sp13_S_contig5797.16236.1 ID=prot_Ecto-sp13_S_contig5797.16236.1|Name=mRNA_Ecto-sp13_S_contig5797.16236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=399bp
MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLI
DATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETIIQ
QGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSL
WAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGA
FTEEMAPIEVKTKKGPKVMDTDEHPRPSSVEKIAALRPVFKKDGVVTSAT
ASGICDGAGSLLLVGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNA
IRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIA
LGHPLGASGSRIMAHLTHELRRKGLKYGVGAACIGGGQGIAVVIENVA*
back to top

mRNA from alignment at Ecto-sp13_S_contig5797:2..4943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5797.16236.1 ID=mRNA_Ecto-sp13_S_contig5797.16236.1|Name=mRNA_Ecto-sp13_S_contig5797.16236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5797:2..4943- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGCCACGTACCACGCCCCTGTACGTCAAGCAAGAAGAACATGGCCGC TAGTGGGGTGTTCATCGTCGGTGCAAAAAGGACAGCATTTGGGTCTTTCG GGGGATCGTTGTCCCGTTTGAGGTACACACCACGATGAAATATTCGACCA GTTCGACACAGGTCGCGACCACAGTGGGACTGCTTCGTTGGCCATGCCGA TAGCGGGGCACGGGGTGGGCTGTATGGCACTGCCGATGTAGCTGACACAG GGAGCTCTCTTGTGTCCTTATGACGCAAGCAGACCTTTGTTCCCACGAGC ACCTCCCATTATCTTTCTTCATTCAAGTTGCAGTTGCCTCTCCGCTGTTC TTTGCGCTGTGTGTCCGCTCTTGAACATATACCGGAAGCGCTACCGATCT GGCGGTGGCCTCTTCCAAGGCTGCCCTGGTATCAGCAGGCATCGGCCCTG ATTTGATTGATGCCACCTTCGTGGGAAATGTCATCCAGACAAGGTATGTT GTAGTGGGCATGAGAGTTTTGAAAGCGCAAGGTTCTACTCTATTTCTCGA GTAGACTATGCGTACAACTGCTACTGTATACGCTCGCAAATCAGCCTCCC CGAGTGTAGCGAGTAGCCAGCAGCCAACGTATGTCGCTCCCCGACGTTAT TTACAGGCATTGCATGGTCAGGTTGTGGATTGGAATCCTATCGACAAGTA GAACTCTGGATAATGTGTGCAAGGTTCGGTCTTTTGATGACGCAAGGGAT GCTGAAACCCCTGCTGGCGTGAAATAGTCAAGCAATCTATTGCAAGCCGC TGCCTAGGGAAGAGAACCTGCACTTCGGATAAGACAACCATCAATCTCTT GCGCATACCTTTTGCACAGAACACCAGTACCTAAAATGAGAGTAAGCTCG GCTTGTTGGGCTATCGACTACCATACAATGAAGCGAGGACCAAAAGCTAT GGTACAAAAATTCGCCTACACATTGAGAGCGGTCCAGGTCCTGCAGGGGG GTGGGTGATGTCTGACAGCTGCACCATGTTTTGATGTCGAAAACGTTCTT AGAACATGATATATAGAAGTACACAACCATTGAAAGAGTACGTTCCGCTA CAACGTCAAGCTTACAACAGCACTGCTTCATGACACGACCCGACTCCCCC GCGTAACATGCACTCCGCCTGCAGTCCGGATGCATGCTACCTGTCGAGAC ACGTCGCTCTAAAAGTTGGGGCCCGGGTGGAGACTCCCGCCCTCACCGTA AACCGCTTGTGCGGCAGCGGCTTCGAGACCATCATCCAGGTGAGCGTCGT TGTGGTAGACCCACGGGTGGTTTGGATCCACCTATGGGGCTGGCGATTAA GTACATCGATACTAGATATTTGGGCAGATGTTTACATAACTGACTTTAGG ATCGTCTCCAGCACGTGGGTACCAATATCCGCTGGGTAGAGAATGGTGCA CGCCTTCCGCCCGGTGCAAGATCAGGGCTGGGTAGTTGCACAAGCATGCT GCTCATAGCGTCCCTATCCAACCCTCACTATCTCCACCGTCGGAGACCCC CTCTCTTCGTGTACACAATGACGTGTTACATATGTATGGTTGCGCTAGTA GTCTCGTTTCACGGANNNNNNNNNNNNNNNNCGTGGGCTTGCACTTTTTA TAGACATGTCAACCCGCAGCTGTGGCAGCGGCTGAGTAAAACTGCTGAAG ATGAGTATCCGTTTGAGATCACCTGCGTGTGCTGTTGGCTGTGTCGTGGC ACGGGCGCATGCTTTTCATTTGCGGGCAAATGAGTGCCTTCGTATGCTTT TTGACGGCGAGATTCGATTGGATTCTCTTCGTCTTTGATGTCAGCCTAGA CAATGTACGGAGTCATCTTGCGTTGTGGTCAACCACCACCCTTCCCTTGC GGCCGGCCCACTCGATCGGACCCTGCTTTTCCATGTTGTCAATCCACTGG AAGCAGGGAGCCGAGGCGATCCAGCTTGGCAAGGCCTCCGTTGCGTTGTG CGCAGGTGCAGAAAATATGAGCTCAGCACCTCTGGTTGTCGCTGGAAACG ATGCAAGGTGGGAAATTGATACTGTAGGTCGCCGGCACAGCAGTTCTCAC GAGTGTAAGCACGAGCAAACGGACCTCGTGCAATCGAAATCTTGAGGCTT AATGAATGGGTTCGACGTTGTCATCTTCGACGATTTAACTCGCCGTCTGA TACGTGAATTTCTTGTTGGGCAAACCAAAGGTGGGGTGTCGCTTTGGGGA GTGGTCTGAAGATGGAAGACAGCTTGTGGGCTGGCCTCACGGATTCGTAT GCTGGGCTGCCCATGGGAATGACGGCTGAGAACCTGGGGGATAAGGTGCG TCTGCCTGATACCACGTGAACGCGGGAGGCGTAAAATTTCTTGTCGAAAC TACAAACAGCAGTTCCATGTTCGGCAGCCTGTTTTGAGAGGCTCTCAAGT TTCAAGCAAGCAGATTTCGTCAGTGGTTCGGTGCTAGCGATTGTGCCTTG TGGCGCGCATCTCCGCAAACCACGAGAGGTAATCGATTATTGTTTTTCGT GAATTTTGCGGTTGTCCGTGGCAGTACGGCATCACAAGGGAGCAGTGTGA AGAGTACTCCGTCCTCTCGCAGACGCGGTGGAGCTCAGGGAATGCCAATG GGGCGTTCACCGAGGAAATGGCGCCTATCGAGGTCAAGACCAAGAAGGGG CCAAAGGTGCGAGAAGTTGTAACGACTCTTATGAAGCGTTTCTCAGTTTT GGAAGCACGAATGCCATCTTTGCATCACGCCCGAGTTACACGGCGGTTGC GCAAAAGGACTGTAGAGGGGACGTCTTGTGTTTCCGCCAGAGATGGAGGA AAACAACGTTCTGTCCACGCCAGGTATGTGCAGGTGCGGCGAATCGCGCC CACGGAGCAACACCCTGTGAAGACGGCGTGGGTTGAGAAACATCCTTGAA CCCGTCGATTGTGCTCTTTAAACCTAAGGCGCCATATCAGGCAGTGTTCT GGTGTAAAACAGTGGTCGTTTGCGGACGAAATGTGATTCTCGAAGTGCTC GACTGAGTCGTAGTCATTTGAAGTGATACGTGCCGACATTTCCTACAGGT GATGGATACGGACGAACACCCACGACCAAGTTCGGTGGAGAAAATTGCTG CGCTCCGTCCGGTCTTCAAGAAAGATGGCGTGGTAACGTCAGCAACCGCC TCCGGTATCTGCGATGGAGCTGGGAGGTCAGTTGGTGCATGTGTTTGGGC CACGGCAGTTGCTTTCTCATCTCATACCCGCACCCGATTGTACCCGAGGC GGCAGAAGGGATCAAGCCTTTGGCACATTTGGCCCTTGTCGCGCTGAAAA GCCCGGCATCTTCATATTAGGGGGCGCTGCCATCGGACACGATGTTCCTG ATACATACCCATCGGAAGGGGCGATCAATTCATGCAAATCGCGGTCGTAG CTACTTCAGCTGACCTCCCGCCTCAACTCCACGCTTGCCCATTTCAGCCT GCTGCTCGTAGGAGAATCGGCCGTCAACCAGAAACAATTGACACCCCTGG CACGTGTGGTGGCGACGCACGAGGTTGGGTGCGACCCCGCTATCATGGGC ATCGGCCCCGTCAATGCTATCCGCGGCGCTCTACAGAAGGCGGGACTTAC GCTAGCCGACATGGACCTCGTGGAGGTACGCTCCGTTGCATCTGTCGTTG GTGACGCAACACGGGTACCGATATAATTCCAGATCGAAGAGCCTGTCGTT AACATATGTCTGCGGGAGTGACGCCGTAAAAACCGAAAACGATGACATAC CCATGACCATATCCAAGAATTCCTGGGACGACACACACACACATCCAGCT GGAACCTCAACGCTGTGCCAAACCACACATTGGTAGACCAGGGAGCTATA TCTATCATCTACACCTTAATTTTTCTGGAGGCAGAACTCGTCCAGGAATA CTTATGGATCTCGAGTCTACCGAACCCTGTTCTTCATTTATTCTTGCCGT CTAATTTGCAGTGGGGCATTTGTGAAAGCTGCGTAAACGAAATGTCTGTG TTCCGCCAACCCCAGAGTGACAGCCCACGCGGCGATGTGATCAGAATTTA TTGTAGACACAGTTTCGACGGCAGCAGCGTAATTGAATTCTGCTGTTCCC GTCTTCTGCACGTATGCGTTGTTGGCCAACACAGGTCAACGAAGCATTTG CAGTTCAATACTTGGCCGTAGAGAAGGAACTGGGGTTGGAACGTGGCAAG ACTAACACCAACGGCGGAGCGATCGCGCTGGGGCATCCACTCGGAGCATC TGGGAGTCGTATTATGGCGCACCTCACCCACGAGCTTCGTCGCAAAGGAT TGAAGTACGGAGTAGGGGCAGCCTGCATTGGCGGGGGACAGGGAATCGCT GTCGTCATTGAAAATGTTGCCTAGGAGGCGCTGGGGAGATACGGAGTCAC AGCCCGATATGACACAGCACTAAAGCCGCCCTCTTTAAGTACCAGGTCTT CGATGTAGGGCATGACGCACAGGTGAACAGAGTCATATACATTTTTGTCA AGTGAGTGCCCAACCCGTGTGATGCTGATGTAGAGTCGGGACAAAATTAC AGGCACAACTATTTCGTACCTGGAGAGGGTGTGACTGCGGCATGACGCAC AGGTGAACAGAGTCATGTACATTTTTGTCAAGTGAGTGCCCAACCCGTGT GATGCTGATGTAGAGTCGGGACAAAATTACAGGCACAACTATTTCGTACC TGGAGAGGGTGTGACTGCCCGCGGACCCCACGGCGGGCGGGAGATGGACC AAGTGCTCAACAGCACGTCGGTGTTGTCTGTTCCCTCACAAGAAGAAATA TTCAATGTGTGCCGACGAGGGCATGGACTAGTGCCTGTGGCGAGAGGTAG TAGGCTACGGATTGCGGGTAATCACACCGCATCTTCTCTGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5797:2..4943-

>mRNA_Ecto-sp13_S_contig5797.16236.1 ID=mRNA_Ecto-sp13_S_contig5797.16236.1|Name=mRNA_Ecto-sp13_S_contig5797.16236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5797:2..4943- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCTAGTGGGGTGTTCATCGTCGGTGCAAAAAGGACAGCATTTGG
GTCTTTCGGGGGATCGTTGTCCCGTTTGAGCGCTACCGATCTGGCGGTGG
CCTCTTCCAAGGCTGCCCTGGTATCAGCAGGCATCGGCCCTGATTTGATT
GATGCCACCTTCGTGGGAAATGTCATCCAGACAAGTCCGGATGCATGCTA
CCTGTCGAGACACGTCGCTCTAAAAGTTGGGGCCCGGGTGGAGACTCCCG
CCCTCACCGTAAACCGCTTGTGCGGCAGCGGCTTCGAGACCATCATCCAG
CAGGGAGCCGAGGCGATCCAGCTTGGCAAGGCCTCCGTTGCGTTGTGCGC
AGGTGCAGAAAATATGAGCTCAGCACCTCTGGTTGTCGCTGGAAACGATG
CAAGGTGGGGTGTCGCTTTGGGGAGTGGTCTGAAGATGGAAGACAGCTTG
TGGGCTGGCCTCACGGATTCGTATGCTGGGCTGCCCATGGGAATGACGGC
TGAGAACCTGGGGGATAAGTACGGCATCACAAGGGAGCAGTGTGAAGAGT
ACTCCGTCCTCTCGCAGACGCGGTGGAGCTCAGGGAATGCCAATGGGGCG
TTCACCGAGGAAATGGCGCCTATCGAGGTCAAGACCAAGAAGGGGCCAAA
GGTGATGGATACGGACGAACACCCACGACCAAGTTCGGTGGAGAAAATTG
CTGCGCTCCGTCCGGTCTTCAAGAAAGATGGCGTGGTAACGTCAGCAACC
GCCTCCGGTATCTGCGATGGAGCTGGGAGCCTGCTGCTCGTAGGAGAATC
GGCCGTCAACCAGAAACAATTGACACCCCTGGCACGTGTGGTGGCGACGC
ACGAGGTTGGGTGCGACCCCGCTATCATGGGCATCGGCCCCGTCAATGCT
ATCCGCGGCGCTCTACAGAAGGCGGGACTTACGCTAGCCGACATGGACCT
CGTGGAGGTCAACGAAGCATTTGCAGTTCAATACTTGGCCGTAGAGAAGG
AACTGGGGTTGGAACGTGGCAAGACTAACACCAACGGCGGAGCGATCGCG
CTGGGGCATCCACTCGGAGCATCTGGGAGTCGTATTATGGCGCACCTCAC
CCACGAGCTTCGTCGCAAAGGATTGAAGTACGGAGTAGGGGCAGCCTGCA
TTGGCGGGGGACAGGGAATCGCTGTCGTCATTGAAAATGTTGCCTAG
back to top