mRNA_Ecto-sp13_S_contig5791.16231.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5791.16231.1
Unique NamemRNA_Ecto-sp13_S_contig5791.16231.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5791.16231.1 vs. uniprot
Match: A0A6H5KZU3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.110e-7
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:  115 QQQHLHQHPSGWTKSFKNVFNKSSGR 192
            QQQHLHQHPSGWTKSFKNVF KSSGR
Sbjct:  175 QQQHLHQHPSGWTKSFKNVFTKSSGR 200
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BLAST of mRNA_Ecto-sp13_S_contig5791.16231.1 vs. uniprot
Match: D7FU55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU55_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.110e-6
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:  115 QQQHLHQHPSGWTKSFKNVFNKSSGR 192
            QQQHLHQ+P GWTKSFKNVF KSSGR
Sbjct:   45 QQQHLHQYPPGWTKSFKNVFTKSSGR 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5791.16231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZU3_9PHAE2.110e-796.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FU55_ECTSI7.110e-688.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5791contigEcto-sp13_S_contig5791:5573..6496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size193
Hectar predicted targeting categoryother localisation
Exons3
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463802.508718-CDS-Ecto-sp13_S_contig5791:5572..56151681463802.508718-CDS-Ecto-sp13_S_contig5791:5572..5615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5791 5573..5615 +
1681463802.5216367-CDS-Ecto-sp13_S_contig5791:5955..60261681463802.5216367-CDS-Ecto-sp13_S_contig5791:5955..6026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5791 5956..6026 +
1681463802.535014-CDS-Ecto-sp13_S_contig5791:6417..64951681463802.535014-CDS-Ecto-sp13_S_contig5791:6417..6495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5791 6418..6495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5791.16231.1prot_Ecto-sp13_S_contig5791.16231.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5791 5573..6495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5791.16231.1

>prot_Ecto-sp13_S_contig5791.16231.1 ID=prot_Ecto-sp13_S_contig5791.16231.1|Name=mRNA_Ecto-sp13_S_contig5791.16231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
GGRGVLRYGACRYQGAREHAEHRRGPISLESSSRTRGPQQQHLHQHPSGW
TKSFKNVFNKSSGR
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mRNA from alignment at Ecto-sp13_S_contig5791:5573..6496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5791.16231.1 ID=mRNA_Ecto-sp13_S_contig5791.16231.1|Name=mRNA_Ecto-sp13_S_contig5791.16231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5791:5573..6496+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGACGAGGCGTTCTTCGCTACGGGGCATGCCGATACCAGGGTGGGTG
TTTTTTATTTTTCGACCTCGGTTTTTCGGCAACGGCCACCAGAAAATGTA
TCGACGTGATGTATGTGTGCGTGTTTCATGTTGGCATCGACCGCGCCAAC
CGGCTGACCAATGAAAAAGACGTCAGTCAGTGTGTGTGCGTGTGCTGTTT
TTCTAGAGTATTTTTCTCCGGTTGTTGTTGTTGTGGTTGTAATTGCATCG
AAAACGACGATGGTGTTTGTCCAGCAATGCTCCGTGCGGTTGTTTACTCG
TGTATAGCGAAGAAAACGATGTTGCCGGCTGCAGTATAAGGTGTAGGCGG
CAAATGGGCTCCGCTGCGATTGTTGACCCGCAGGTGCTCGAGAGCACGCA
GAGCACAGGCGAGGACCAATCTCTCTCGAAAGCAGCAGCAGAACACGGGG
TCCGGTGAGGTACTAGGCCAGTGGAAGCCGGTGTGTGTTGCTTCCCTCCA
ACACAGACGGTAGAGTTTTGTCCTTTCAGGATCCTACGTTGGGCGGAAAG
GGAGTCAGGGTGTGTGTGCGTGTGCACAGGACGATTGCGAAGGACGGCAC
CCGAATATCACCACTACCTTAGCCAACATCCTCCGTTGCCTTGGTCCTGG
CTTTCCCCTTGCCTCCACCGCTGTAAACGCTGTCCTCCCTCCTACTCCGA
GGTTCGTGATCAAGAGATGCGTTTGTAGCGAGTGTTGGCCCTCGCATCCG
GATGATGAGGTCATGGAGGGTTCTGAGCTCTGTTTGTTGTCTGCACACGT
GCATGGTTGTATCGTGAATCTCGTCTGCCGCTTCGGATGGAGCAGCAGCA
ACAGCACCTGCACCAGCACCCGTCTGGCTGGACGAAGAGCTTCAAGAATG
TTTTCAATAAGTCGAGTGGTCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5791:5573..6496+

>mRNA_Ecto-sp13_S_contig5791.16231.1 ID=mRNA_Ecto-sp13_S_contig5791.16231.1|Name=mRNA_Ecto-sp13_S_contig5791.16231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5791:5573..6496+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGACGAGGCGTTCTTCGCTACGGGGCATGCCGATACCAGGGTGCTCG
AGAGCACGCAGAGCACAGGCGAGGACCAATCTCTCTCGAAAGCAGCAGCA
GAACACGGGGTCCGCAGCAACAGCACCTGCACCAGCACCCGTCTGGCTGG
ACGAAGAGCTTCAAGAATGTTTTCAATAAGTCGAGTGGTCGC
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