prot_Ecto-sp13_S_contig5780.16214.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig5780.16214.1
Unique Name	prot_Ecto-sp13_S_contig5780.16214.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	287

Homology

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BLAST of mRNA_Ecto-sp13_S_contig5780.16214.1 vs. uniprot
Match: D7G0C4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C4_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 6.910e-154
Identity = 260/286 (90.91%), Postives = 266/286 (93.01%), Query Frame = 0

Query:    1 YLAGEWAFVSADSFSLTCGCSDTPTPAPESGSTTPSPAVAPTSLLNPDGXXXXXXXSPVDDDGSPVGASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAVFPGFLDEQETADARWIVGTYAKDADDLAVTCVSDESPTTAHPADSTFSCDLTGTGAFITVTDLLFGFTCGCTSXXXXXXXXXXXXXXXXXAGTQRGIGDTLAPATSSSPSSPAPFDFAVGLDPSTPSPESDESLDTAANGGRGQHAAPGVLFILSGVGGLFVGLVGAIVAAL 286
            YLAG W +VSADSFSLTCGCSD PTPAPESGSTTPSPA +PTSLLNPDGXXXXXX SPVDDDGSP GASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAVFPGFLDEQETADARWIVGTYA+DADD  VTCVSDESPTTAHPADSTFSCDLTGTGAFITVTD+LFGFTCGCT XXXXXXXXXXXXXXXXX   +R + DT AP TS SPSSPAP D AVGLDPSTPSPESDE LDTAANGGRGQHAAPGVLFILSGVGGLFVGLVGAIVAAL
Sbjct:  325 YLAGGWVYVSADSFSLTCGCSDNPTPAPESGSTTPSPAYSPTSLLNPDGXXXXXXTSPVDDDGSPEGASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAVFPGFLDEQETADARWIVGTYAEDADDRTVTCVSDESPTTAHPADSTFSCDLTGTGAFITVTDVLFGFTCGCTXXXXXXXXXXXXXXXXXXXXXERSLDDTPAPTTSFSPSSPAPVDLAVGLDPSTPSPESDEGLDTAANGGRGQHAAPGVLFILSGVGGLFVGLVGAIVAAL 610

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BLAST of mRNA_Ecto-sp13_S_contig5780.16214.1 vs. uniprot
Match: A0A6H5K2S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S1_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 2.000e-73
Identity = 137/165 (83.03%), Postives = 147/165 (89.09%), Query Frame = 0

Query:  122 QETADARWIVGTYAKDADDLAVTCVSDESPTTAHPADSTFSCDLTGTGAFITVTDLLFGFTCGCTSXXXXXXXXXXXXXXXXXAGTQRGIGDTLAPATSSSPSSPAPFDFAVGLDPSTPSPESDESLDTAANGGRGQHAAPGVLFILSGVGGLFVGLVGAIVAAL 286
            +E ++ARWIVGTY +DADDLAVTCVS+ESPTT HPADSTF CDLTGTGAFI VTD++FGFTCGCTS XXXXXXXXXXXX    +GT+RGI DT APATSSS SSPAP D A GLDPSTPSPESD SLDTAANGGRGQHAAPGVL ILSGVGG+FVGLVGAIVAAL
Sbjct:    9 EERSNARWIVGTYDEDADDLAVTCVSEESPTTTHPADSTFFCDLTGTGAFIAVTDVMFGFTCGCTSAXXXXXXXXXXXXPSP-SGTERGIDDTPAPATSSSLSSPAPVDLAAGLDPSTPSPESDASLDTAANGGRGQHAAPGVLLILSGVGGIFVGLVGAIVAAL 172

[Close]

BLAST of mRNA_Ecto-sp13_S_contig5780.16214.1 vs. uniprot
Match: A0A6H5K2Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.780e-52
Identity = 99/126 (78.57%), Postives = 101/126 (80.16%), Query Frame = 0

Query:    1 YLAGEWAFVSADSFSLTCGCSDTPTPAPESGSTTPSPAVAPTSLLNPDGXXXXXXXSPVDDDGSPVGASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAVFPGFLDEQETAD 126
            +L  E  FVSADSFSLTCGCSD PTPAPESGSTTP+PA                  SPVDDDGSPVGASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAV PGFLDEQE AD
Sbjct:  323 FLGVELVFVSADSFSLTCGCSDNPTPAPESGSTTPAPAT-----------------SPVDDDGSPVGASGCGGTDEFTISSSELEEFDGCYVDAGETETFFSTSGEKADGVMAVSPGFLDEQEIAD 431

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig5780.16214.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig5780.16214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G0C4_ECTSI	6.910e-154	90.91	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K2S1_9PHAE	2.000e-73	83.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2Y4_9PHAE	4.780e-52	78.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 263..285
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 286..286
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..262
None	No IPR available	TMHMM	TMhelix		coord: 263..285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig5780	contig	Ecto-sp13_S_contig5780:3734..8002 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig5780.16214.1	mRNA_Ecto-sp13_S_contig5780.16214.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig5780 2428..8002 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig5780.16214.1 ID=prot_Ecto-sp13_S_contig5780.16214.1|Name=mRNA_Ecto-sp13_S_contig5780.16214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
YLAGEWAFVSADSFSLTCGCSDTPTPAPESGSTTPSPAVAPTSLLNPDGT
TPAPATSPVDDDGSPVGASGCGGTDEFTISSSELEEFDGCYVDAGETETF
FSTSGEKADGVMAVFPGFLDEQETADARWIVGTYAKDADDLAVTCVSDES
PTTAHPADSTFSCDLTGTGAFITVTDLLFGFTCGCTSASASEGDDDEATT
TPSPAGTQRGIGDTLAPATSSSPSSPAPFDFAVGLDPSTPSPESDESLDT
AANGGRGQHAAPGVLFILSGVGGLFVGLVGAIVAAL*