mRNA_Ecto-sp13_S_contig578.16211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig578.16211.1
Unique NamemRNA_Ecto-sp13_S_contig578.16211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig578.16211.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 7.780e-73
Identity = 139/160 (86.88%), Postives = 144/160 (90.00%), Query Frame = 1 
Query:    1 CEGRESPLQPFVHVGEGGPTAASDAEGEADNEAMEVIEEVGKKKESEGGEHSENEDSNRDGGDVSGSGDRCCAGGDVDQEARDDALDIGSGSNEAGENLTLSTDIPAASGVSGGCKRVDELAVTAARSADKTEPDTSSRGKGTLVTEVKEPRPEATVAAA 480
            CEGRESPLQ FVHVGEGGPTAASDA+GEA+NEAMEVIEEVGK+KE EGGEHSENEDS RDGGDVSGSGD CCAGGDVDQE  DDALDIGSGSNEAGE LTLSTDIPA SGVSGGCKR DELA TA+ SADK EPDT SRGKGT VTEV+EPRPEAT A A
Sbjct:  190 CEGRESPLQTFVHVGEGGPTAASDAKGEAENEAMEVIEEVGKEKEIEGGEHSENEDSKRDGGDVSGSGDYCCAGGDVDQEVLDDALDIGSGSNEAGEILTLSTDIPATSGVSGGCKRGDELADTASHSADKIEPDTPSRGKGTPVTEVEEPRPEATAAVA 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig578.16211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCG1_9PHAE7.780e-7386.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig578contigEcto-sp13_S_contig578:2141..2622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size482
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005340.1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.1573467-CDS-Ecto-sp13_S_contig578:2140..26201681463801.1573467-CDS-Ecto-sp13_S_contig578:2140..2620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig578 2141..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig578.16211.1prot_Ecto-sp13_S_contig578.16211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig578 2141..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig578.16211.1

>prot_Ecto-sp13_S_contig578.16211.1 ID=prot_Ecto-sp13_S_contig578.16211.1|Name=mRNA_Ecto-sp13_S_contig578.16211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
CEGRESPLQPFVHVGEGGPTAASDAEGEADNEAMEVIEEVGKKKESEGGE
HSENEDSNRDGGDVSGSGDRCCAGGDVDQEARDDALDIGSGSNEAGENLT
LSTDIPAASGVSGGCKRVDELAVTAARSADKTEPDTSSRGKGTLVTEVKE
PRPEATVAAA
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mRNA from alignment at Ecto-sp13_S_contig578:2141..2622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig578.16211.1 ID=mRNA_Ecto-sp13_S_contig578.16211.1|Name=mRNA_Ecto-sp13_S_contig578.16211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig578:2141..2622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGAAGGAAGAGAAAGTCCCCTCCAGCCCTTTGTCCATGTGGGCGAGGG
TGGGCCTACGGCCGCGTCCGACGCGGAAGGTGAAGCTGACAATGAGGCGA
TGGAGGTGATTGAGGAAGTGGGGAAGAAGAAAGAGAGCGAGGGAGGCGAA
CACTCCGAAAATGAGGACAGCAATCGTGATGGCGGTGACGTGTCAGGCTC
TGGGGATCGCTGCTGTGCCGGCGGCGACGTAGACCAGGAGGCTCGGGATG
ATGCCCTTGACATCGGCTCAGGCAGCAACGAGGCAGGCGAAAATTTGACG
CTGAGCACGGATATACCGGCCGCATCTGGCGTCTCGGGCGGTTGCAAGAG
GGTAGACGAGTTGGCCGTCACAGCTGCTCGTTCGGCGGATAAAACGGAGC
CCGATACGTCATCGCGGGGAAAAGGAACACTTGTGACCGAAGTGAAAGAA
CCGCGTCCGGAGGCAACAGTAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig578:2141..2622+

>mRNA_Ecto-sp13_S_contig578.16211.1 ID=mRNA_Ecto-sp13_S_contig578.16211.1|Name=mRNA_Ecto-sp13_S_contig578.16211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig578:2141..2622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGAAGGAAGAGAAAGTCCCCTCCAGCCCTTTGTCCATGTGGGCGAGGG
TGGGCCTACGGCCGCGTCCGACGCGGAAGGTGAAGCTGACAATGAGGCGA
TGGAGGTGATTGAGGAAGTGGGGAAGAAGAAAGAGAGCGAGGGAGGCGAA
CACTCCGAAAATGAGGACAGCAATCGTGATGGCGGTGACGTGTCAGGCTC
TGGGGATCGCTGCTGTGCCGGCGGCGACGTAGACCAGGAGGCTCGGGATG
ATGCCCTTGACATCGGCTCAGGCAGCAACGAGGCAGGCGAAAATTTGACG
CTGAGCACGGATATACCGGCCGCATCTGGCGTCTCGGGCGGTTGCAAGAG
GGTAGACGAGTTGGCCGTCACAGCTGCTCGTTCGGCGGATAAAACGGAGC
CCGATACGTCATCGCGGGGAAAAGGAACACTTGTGACCGAAGTGAAAGAA
CCGCGTCCGGAGGCAACAGTAGCAGCAGCA
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