mRNA_Ecto-sp13_S_contig5749.16160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5749.16160.1
Unique NamemRNA_Ecto-sp13_S_contig5749.16160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5749.16160.1 vs. uniprot
Match: D7G5B2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 6.920e-76
Identity = 212/217 (97.70%), Postives = 216/217 (99.54%), Query Frame = 1 
Query:    1 MKRGKRCFIHSCLAPAPFASPLQPDVHACEVHKQRDFVNMRNKRCLEPGCYRNPHYGVSRLVDPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVVIPGSAKKRGKFCEIHCDVNELVDKDVSSDGTASDKKRGRAWMTGI 651
            MKRGKRCFI SCLAPAPFASPLQPDVHACEVHK+RDFVNMRNKRCLEPGCYRNPHYGVSRL+DPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVVIPGSAKKRGKFCEIHCDVNELVDKDVS+DGTASDKKRGRAWMTG+
Sbjct:    1 MKRGKRCFIQSCLAPAPFASPLQPDVHACEVHKKRDFVNMRNKRCLEPGCYRNPHYGVSRLIDPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVVIPGSAKKRGKFCEIHCDVNELVDKDVSTDGTASDKKRGRAWMTGM 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5749.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5B2_ECTSI6.920e-7697.70EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5749contigEcto-sp13_S_contig5749:2862..6535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1368
Hectar predicted targeting categoryother localisation
Exons6
Cds size1368
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5749.16160.1prot_Ecto-sp13_S_contig5749.16160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5749 2862..6535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463796.3943944-CDS-Ecto-sp13_S_contig5749:2861..29901681463796.3943944-CDS-Ecto-sp13_S_contig5749:2861..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 2862..2990 +
1681463796.4051924-CDS-Ecto-sp13_S_contig5749:3772..38751681463796.4051924-CDS-Ecto-sp13_S_contig5749:3772..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 3773..3875 +
1681463796.4212084-CDS-Ecto-sp13_S_contig5749:4512..46461681463796.4212084-CDS-Ecto-sp13_S_contig5749:4512..4646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 4513..4646 +
1681463796.433524-CDS-Ecto-sp13_S_contig5749:5137..54211681463796.433524-CDS-Ecto-sp13_S_contig5749:5137..5421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 5138..5421 +
1681463796.443372-CDS-Ecto-sp13_S_contig5749:5657..59981681463796.443372-CDS-Ecto-sp13_S_contig5749:5657..5998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 5658..5998 +
1681463796.4539456-CDS-Ecto-sp13_S_contig5749:6158..65351681463796.4539456-CDS-Ecto-sp13_S_contig5749:6158..6535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5749 6159..6535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5749.16160.1

>prot_Ecto-sp13_S_contig5749.16160.1 ID=prot_Ecto-sp13_S_contig5749.16160.1|Name=mRNA_Ecto-sp13_S_contig5749.16160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=456bp
MKRGKRCFIHSCLAPAPFASPLQPDVHACEVHKQRDFVNMRNKRCLEPGC
YRNPHYGVSRLVDPNSKAQYCTKHKAPGMQNVNGGRCAGPDCSKQPRFSL
PGEKGKYCSKHRKEGMVDVLYTPCAAEGCRKHPHFGHVEGGPRYCAQHRA
EGMVDVKHRRCAVKSCRKDRVVIPGSAKKRGKFCEIHCDVNELVDKDVSS
DGTASDKKRGRAWMTGIEDDREYMSSGSSQRGSSVGDLAGNTPYDYSSSR
SASIPSIHEAAQGLAHLAMLASRESALSVSGEAAGTSLSRGNGHVPGRAP
YQQAGQPESTHRGTARPIAGRGPSHPNTELDRHAKSRDTRAFFYPAARPG
SERDPYPLFKRERLQSNDPLEPGRPRVSPDFRGSTSASMASGPAAAAVPP
FRLRYFDPKPNSSMYSAYPSPWDFHREGERARWADGDSVRAPVPMRAWDS
HPSAT*
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mRNA from alignment at Ecto-sp13_S_contig5749:2862..6535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5749.16160.1 ID=mRNA_Ecto-sp13_S_contig5749.16160.1|Name=mRNA_Ecto-sp13_S_contig5749.16160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5749:2862..6535+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAGGCAAGCGATGCTTCATCCACAGCTGCCTGGCTCCGGCGCC
GTTCGCAAGTCCTTTGCAACCGGATGTGCACGCGTGTGAAGTCCATAAGC
AGAGGGACTTTGTCAACATGAGGAACAAGGTGCGAGTAGGAGCGAATGCC
TTGCGTTGGCTGTGACTCTGGTCACGCGTATTCACAGCTCTTGCTGCTGC
AAAACAGCCCGTACTGCTAAAACTCGTGCACGTCGACGGGGAAAACACAC
GACCAAGGAATTAAATGATGTGTGTCGTGCACACACAGGCGGTAACCGGG
CATGCGTATACTGCTCCTGTCACTGCTGCTGTCACACTCTCTAATTGCAA
ATGCTCTCCCTCCAGTAGAGAGCCGCACCATGTCTCTCCCTCTCGCTCTC
AAGCACCACTACACTCACCGAGTGCGCTGACTAAACACTGACGAGATTCA
GAGACGGCAGAGTGTGTGTGTCTGTCCGCGACGACCGGTAAACAGCAACA
GAGCACAATATAGCAGGCGCAGCAGATTCCGCACTTGTCAACCGCATCAT
TGCTCCAAGTGAGCACGCCCCGCAAAGATTAGCGGTCCGTGTGGCCAGCA
ATTTCGTCTGTGTGTTGTTGACCATGTTGACATATGCACAACGGAGTTAT
CGGGTACGTCCGCAACTACTTTTTCTCTCGCGGGCTCAAGGCGGAGAGGA
TATTATCTGCTGTCCTCGAGACCGGATGCATCTCCAACCGAAACCGCGAG
CGGTGGGATTCCAATCTATTCTGTCGGTTCGTCGGGTGGGCCGTCGAGGC
TCGCGTAGGATGTCGAAGCCTAACCTCGCTGGCATATCTTGCATCTTTCA
GGACGTCTTTTTTCACTTCCTTTCCTTTCGCCTCGAAACTACGGCCATTG
TTACATTTCAGCGCTGCCTCGAGCCAGGATGCTACCGCAACCCGCACTAC
GGCGTGAGCCGACTCGTCGATCCGAACAGCAAGGCTCAGTACTGCACCAA
GCACAAAGCCCCCGGTGAGCTCTCCACAAGATTTCAATTGCAAGTTGTGT
GAATATTGTTGTAGAGAACAGTACCGAAACAAATCTATTCGTGCGCCACT
CGGCATCTCCGTAAGGCCAATACACAAAAGCAGCGACATTGGACACCGAC
CGCCCCAAGTTTCGACAGCGGAACCGCAGCGAGTTTAGGCAATTCTATAG
GCAGTTTATTTGCTCACGAGAAGAACACGTTCACCGAACACCATACGCAT
AAGCTGTATCTTGCCGTATGTTCCGGGCTAGATACCGGTAAAACGTATTT
TGAGTCGTACCGTAAAGAGGAAGTCGAGGAGAACCTTGTACTGTAGATTC
CATTTTTTCACATACGTGTTAATATGTACACCGCCCCTGAATTTTCAGGA
TGGAATGGATCCAAGATATACATACCTAGATTTACGCAAATGTTCGTGTA
CTACGATGCGGTATCCGCTTCTTTTATTGCTGATATAAACGAGTAGACTA
CAGCCTATGCGCAATACATAACCACCCCACAGCAAGTACTGCTGCTCTAC
AGTAGAACAAAGTGTCAAGCTCAAGGGTGATGTCGTATGCTACCCAGCAC
ATGCAACCACCGAGCGACCGCTCGCATACCGTCAACGTCTCTCTCGCTTA
GGTATGCAAAACGTGAATGGAGGAAGATGTGCCGGGCCGGACTGTTCGAA
GCAGCCACGCTTCTCTCTGCCCGGGGAGAAGGGCAAGTATTGTTCCAAGC
ACCGAAAGGAGGGCATGGTCGACGTCCTCTACACGGTGAGCGTCATAATT
CATACGGGACGTAACCAACAAAAACCAACGAAAGACGGGAAGCTCTCACT
CGTTTGTTTTTTACATGTTTGTTCGATCCACCGCAATGAGTATGTCACTC
ATGAATATGCCTGCTCGCAAATGACTGCGGCGGTGTCAGTCTCGTTAGCG
AGGATGACCAATAAATCACATCTCGACCAAGACCAATGATATGTCCCTAT
TGATATCAAATTACACCTATCTATGCCCTGTTCTCCCCGAGAGACACATT
TCAGCTTACCTCCAACGCGATTGGCATGGGAAGCCAGTATGTCGCGATAT
TTATGGAATACCGTCGTTTGAAAGTGTGTTGAGTGTGTCAGTATGTTTGC
AAAGTGATTTAAAGCCAGACCTGATGGATATGCCCACCAACGTCCTCGAC
CTCGCCCCGCTCACCGTGCCCTGTTGTTGGCTTTGGGTGCGGCACGCAAC
TCTCTTGATTTCCAATTTTATTGTAGCCCTGTGCTGCCGAAGGATGCAGG
AAGCACCCCCACTTCGGCCACGTGGAGGGCGGCCCGCGCTACTGCGCGCA
GCACCGCGCGGAAGGGATGGTAGACGTCAAGCACAGGCGCTGCGCTGTCA
AGAGCTGTCGCAAGGACCGCGTGGTGATCCCTGGCAGCGCGAAGAAGCGG
GGAAAGTTCTGCGAGATCCATTGCGATGTCAACGAATTAGTGGACAAGGA
TGTGTCGAGTGATGGGACGGCCAGCGACAAAAAGCGCGGCCGTGCGTGGA
TGACGGGGATGTGAGAGAATGCATTATGTGCTTTAACAACGATTTGCGTT
TCACCAGGGGGATCCTTAGAACGAATACAAGCAAGCGAGAGCTCGATCCA
CAAATCCAGGCTTTCCATTTTCCGCCCCAGATTAGGATAGATACACTTAC
TCGAAACGGTATATCCAGTAGCAGGTGAGTGGTGCATGTGTTCACGAGTC
GTAGTACATGCCCACTAAGCCGTACAATCTGGTTCTCCCACCACAGAGAG
GACGACAGGGAGTACATGAGCTCGGGAAGCTCTCAGCGCGGCTCCTCCGT
GGGAGACTTGGCGGGCAACACGCCGTACGACTACTCCTCAAGCAGGTCGG
CGTCCATCCCGAGCATCCACGAAGCGGCGCAGGGGCTGGCACACCTCGCT
ATGCTCGCTAGCAGGGAAAGCGCTCTCAGCGTCAGCGGTGAAGCCGCCGG
AACTTCTTTGTCGCGAGGGAATGGCCATGTTCCCGGCCGTGCTCCGTATC
AGCAAGCCGGACAACCCGAGAGTACCCACCGCGGCACGGCAAGGCCTATT
GCTGGCCGAGGGCCGTCTCACCCTAACACAGAGCTAGGTGAGGACGAAAA
TTCATGGCATGCATGCACCAATCAGTGTCTCGTCCATTTCTCCGTGCTAT
GCTTGTCCCGGACGAGCGCAAAGTTCTTATCCCCTTGTTGATCATCAACC
TTGTCCCGCTGACCCAACGCACGCTGCCTACCACGTACCCGTACAAGACC
GCCACGCCAAGTCGCGGGACACGAGAGCCTTCTTCTACCCTGCAGCTCGA
CCTGGCTCCGAGCGTGACCCATACCCCCTTTTCAAGCGGGAGAGGTTGCA
GTCCAACGACCCGCTCGAGCCCGGACGACCGAGGGTGTCTCCGGATTTTC
GCGGAAGCACTAGCGCGAGCATGGCCAGTGGCCCGGCGGCCGCGGCCGTC
CCGCCGTTTCGCCTCCGTTATTTCGATCCCAAGCCCAACTCGTCCATGTA
CTCAGCCTATCCAAGTCCGTGGGATTTCCACAGGGAGGGAGAGCGCGCGC
GTTGGGCTGACGGCGACAGCGTTCGCGCGCCTGTGCCAATGCGCGCTTGG
GACAGTCACCCGTCGGCTACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5749:2862..6535+

>mRNA_Ecto-sp13_S_contig5749.16160.1 ID=mRNA_Ecto-sp13_S_contig5749.16160.1|Name=mRNA_Ecto-sp13_S_contig5749.16160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1368bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5749:2862..6535+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAGGCAAGCGATGCTTCATCCACAGCTGCCTGGCTCCGGCGCC
GTTCGCAAGTCCTTTGCAACCGGATGTGCACGCGTGTGAAGTCCATAAGC
AGAGGGACTTTGTCAACATGAGGAACAAGCGCTGCCTCGAGCCAGGATGC
TACCGCAACCCGCACTACGGCGTGAGCCGACTCGTCGATCCGAACAGCAA
GGCTCAGTACTGCACCAAGCACAAAGCCCCCGGTATGCAAAACGTGAATG
GAGGAAGATGTGCCGGGCCGGACTGTTCGAAGCAGCCACGCTTCTCTCTG
CCCGGGGAGAAGGGCAAGTATTGTTCCAAGCACCGAAAGGAGGGCATGGT
CGACGTCCTCTACACGCCCTGTGCTGCCGAAGGATGCAGGAAGCACCCCC
ACTTCGGCCACGTGGAGGGCGGCCCGCGCTACTGCGCGCAGCACCGCGCG
GAAGGGATGGTAGACGTCAAGCACAGGCGCTGCGCTGTCAAGAGCTGTCG
CAAGGACCGCGTGGTGATCCCTGGCAGCGCGAAGAAGCGGGGAAAGTTCT
GCGAGATCCATTGCGATGTCAACGAATTAGTGGACAAGGATGTGTCGAGT
GATGGGACGGCCAGCGACAAAAAGCGCGGCCGTGCGTGGATGACGGGGAT
AGAGGACGACAGGGAGTACATGAGCTCGGGAAGCTCTCAGCGCGGCTCCT
CCGTGGGAGACTTGGCGGGCAACACGCCGTACGACTACTCCTCAAGCAGG
TCGGCGTCCATCCCGAGCATCCACGAAGCGGCGCAGGGGCTGGCACACCT
CGCTATGCTCGCTAGCAGGGAAAGCGCTCTCAGCGTCAGCGGTGAAGCCG
CCGGAACTTCTTTGTCGCGAGGGAATGGCCATGTTCCCGGCCGTGCTCCG
TATCAGCAAGCCGGACAACCCGAGAGTACCCACCGCGGCACGGCAAGGCC
TATTGCTGGCCGAGGGCCGTCTCACCCTAACACAGAGCTAGACCGCCACG
CCAAGTCGCGGGACACGAGAGCCTTCTTCTACCCTGCAGCTCGACCTGGC
TCCGAGCGTGACCCATACCCCCTTTTCAAGCGGGAGAGGTTGCAGTCCAA
CGACCCGCTCGAGCCCGGACGACCGAGGGTGTCTCCGGATTTTCGCGGAA
GCACTAGCGCGAGCATGGCCAGTGGCCCGGCGGCCGCGGCCGTCCCGCCG
TTTCGCCTCCGTTATTTCGATCCCAAGCCCAACTCGTCCATGTACTCAGC
CTATCCAAGTCCGTGGGATTTCCACAGGGAGGGAGAGCGCGCGCGTTGGG
CTGACGGCGACAGCGTTCGCGCGCCTGTGCCAATGCGCGCTTGGGACAGT
CACCCGTCGGCTACCTGA
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