mRNA_Ecto-sp13_S_contig5743.16152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5743.16152.1
Unique NamemRNA_Ecto-sp13_S_contig5743.16152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 877 bits (2266), Expect = 0.000e+0
Identity = 456/516 (88.37%), Postives = 464/516 (89.92%), Query Frame = 2 
Query:   65 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVR--EDAAGGSYKGKV-------SRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            MKRSYEEEKSFITRE+GQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGG GGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTL+DVLPVKEELTQSLFDHIPVGVGT+                         L +G       G    ED       G++       +RRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKI+SQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG
Sbjct:    1 MKRSYEEEKSFITRENGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLDDVLPVKEELTQSLFDHIPVGVGTKGMVPITAADLNDV------------LEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKARRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A7S1GE03_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE03_9STRA)

HSP 1 Score: 706 bits (1821), Expect = 8.030e-250
Identity = 360/519 (69.36%), Postives = 414/519 (79.77%), Query Frame = 2 
Query:   71 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAGGSYK--------------GKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            R+YEEE +++ RE  +RF +D GFVPNM+VPG FY NDRLE L F+EL+Q S  +G GGFLPA+KQ+ANVAALPG+VK SI LPDVHSGYGFA+GNVAAFDM DP +VVSPGGVGFDINCGVRLVRTNLT  D+LPVKE+LTQSLFDHIPVGVG++                       + L  G   G    +RE  A    K               KVS+RAK RGLPQLGTLGAGNHYAEIQ+V+E+YD  AA +MGI++V QVC+MIHSGSRGLGHQVATDAL  ME AM RD I++NDRQLACA+I+S EGQ+YL  MAAAANYAWVNR+ MTFLTR+AF+K F  T ++LDMHVVYDVSHNIAKVE+HIVDG L+ LLVHRKG+TRAFPPHHPLIPVDYQFTGQPV++GGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA SR +SR+TLDY  VL  LE+KGISIRVASPKLVMEEAPESYKDVT VV+TCH AG+S + +KLRP+AV+KG
Sbjct:   10 RTYEEECAYVKRETTERFGVDIGFVPNMRVPGVFYVNDRLESLMFDELKQFSTASGVGGFLPAMKQLANVAALPGIVKRSIALPDVHSGYGFAIGNVAAFDMNDPTSVVSPGGVGFDINCGVRLVRTNLTEADLLPVKEKLTQSLFDHIPVGVGSKGIIP----------------TTAKDLEAGLEMGMDWSLREGYAWAEDKEHCEEYGRMLAADPSKVSKRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDTHAAGRMGIEQVGQVCVMIHSGSRGLGHQVATDALNEMEKAMVRDRIEVNDRQLACARITSTEGQNYLKSMAAAANYAWVNRSSMTFLTRQAFAKMFNSTPDDLDMHVVYDVSHNIAKVEEHIVDGRLRKLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEKGMAETFGSTCHGAGRAHSRAKSRRTLDYHEVLRKLEEKGISIRVASPKLVMEEAPESYKDVTAVVDTCHAAGISKKVIKLRPVAVVKG 512
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: K8FAV9_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FAV9_9CHLO)

HSP 1 Score: 693 bits (1789), Expect = 1.120e-244
Identity = 362/520 (69.62%), Postives = 410/520 (78.85%), Query Frame = 2 
Query:   68 KRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAGGSYK--------------GKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            +R+YEEE S+I   D   + +  GFV NM+VPG FY N  L  LTFEEL+Q +     GGFLPAVKQIANVA+LPG+V  SI LPDVHSGYGFA+GNVAAFD+ DP AVVSPGGVGFDINCGVRLVRTNLT  +V P+KEE+ Q+LFDHIPVGVG                G G   V  + L      G    VRE  A    K               KVS+RAK RGLPQ+GTLGAGNHYAEIQVV+E+YD+ AAKKMGIDK+ QV +MIHSGSRGLGHQVATDALV ME AMA+D +++NDRQLACA+I+SQEG+DYLA MA AANYAWVNR  MTFL R+AF+K F KTAE+LDMHVVYDVSHNIAK+E+HIVDG+LKTLLVHRKG+TRAFPPHHPLIPVDYQ+TGQPV+VGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SR+ SR+ L YE VL  L+ KGISIRVASPKLVMEEAPESYKDVTEVV+TCHDAG+S + VKLRPIAVIKG
Sbjct:   27 QRTYEEECSYIENRDPTSYVVKIGFVANMRVPGIFYVNKFLAGLTFEELKQHAERGRAGGFLPAVKQIANVASLPGIVGRSIALPDVHSGYGFAIGNVAAFDVNDPKAVVSPGGVGFDINCGVRLVRTNLTEAEVQPLKEEVAQALFDHIPVGVG----------------GKGIIPVDAKTLDTALEMGIDWCVREGYAWIEDKERCEENGRMLNADPSKVSQRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLGHQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A2I4D653_9TELE (RNA-splicing ligase RtcB homolog n=28 Tax=Gnathostomata TaxID=7776 RepID=A0A2I4D653_9TELE)

HSP 1 Score: 691 bits (1784), Expect = 2.590e-244
Identity = 354/521 (67.95%), Postives = 405/521 (77.74%), Query Frame = 2 
Query:   65 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAGGSYK--------------GKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            M RSY +E  F+ + +   +RI  GFVPNMKV G FY ND LEKL FEELR    G G GGFLPA+KQI NVAALPG+V  SIGLPDVHSGYGFA+GN+AAFDM DPDAVVSPGGVGFDINCGVRL+RTNL   DV PVKE+L QSLFDHIPVGVG++                    +  + L      G    +RE  A    K               KVS +AK RGLPQLGTLGAGNHYAEIQVV+++YD+ AAKKMGID   QVC+MIHSGSRGLGHQVATDALV ME AM RD I +NDRQLACA+I+SQEGQDYL GMAAA NYAWVNR+ MTFLTR+AFSK FG T ++LDMH++YDVSHNIAKVE+H+VDG  +TLLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFG+TCHGAGRA SR +SR+ LD++ VL  L   GI+IRVASPKLVMEEAPESYK+VT+VVNTCHDAG+S +A+KLRP+AVIKG
Sbjct:    1 MSRSYNDELQFLEKLNSNCWRIKNGFVPNMKVEGIFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDINCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIP----------------MGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDDIYDDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITSQEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHIIYDVSHNIAKVEEHMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPVAVIKG 505
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: W7TEQ9_9STRA (RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEQ9_9STRA)

HSP 1 Score: 686 bits (1770), Expect = 4.150e-242
Identity = 354/515 (68.74%), Postives = 408/515 (79.22%), Query Frame = 2 
Query:   71 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVR--EDAAGGSYKG--------KVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            R++EEE  F+ RE   RFRID G VPNMKV G FY N +LE+L F EL+Q +   G GGFLPAVKQIANVAALPG+V  SIGLPDVHSGYGFA+GNVAAF +AD +A+VSPGGVGFDINCGVRL+RTNLT EDV   +E+LTQSLFDHIPVGVG++                      +  L +G       G    ED       G        KV  RAK RGLPQLGTLGAGNHYAEIQVVEE++D +AA +MGID++ QVC+MIHSGSRGLGHQVATDALV ME AMARD I  NDRQLACA+I S EGQ+YLA MAAAAN+AWVNR+ MTFLTR+AF+K F  T ++LDMHV+YDVSHNIAKVE+H+  G  KTLLVHRKG+TRAFPP+HPLIPVDYQFTGQPV++GGTMGTCSYVLTGT KG++ETFGSTCHGAGRA+SRN+SRKTL+Y  VL  LE+KGISIRVASPKLVMEEAPESYKDVT+VV+TCH+AG+S +A+KLRPIAV+KG
Sbjct:    8 RTFEEEMGFLHRETPTRFRIDKGCVPNMKVEGAFYVNTKLEELMFAELKQHTTAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFAVADTEAIVSPGGVGFDINCGVRLIRTNLTEEDVRGKREKLTQSLFDHIPVGVGSKGVIPTSAADL------------EAALEMGMDWSLREGYAWAEDNEHCEENGRMRQADPTKVGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAARMGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLACARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDMHVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEYTEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAIKLRPIAVVKG 510
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A7S1AJX4_NOCSC (RNA-splicing ligase RtcB homolog n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AJX4_NOCSC)

HSP 1 Score: 686 bits (1770), Expect = 4.150e-242
Identity = 358/517 (69.25%), Postives = 403/517 (77.95%), Query Frame = 2 
Query:   68 KRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSG-GNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVR--EDAAGGSYKG--------KVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            KRSYE+EK+++ RE    + I  GFVPNM VPG FY N  LE+L F+E+R  S   +  GGFLPA+KQI NVAALPG+VK SIGLPD+HSGYGFA+GNVAAF+MADP AVVSPGGVGFDINCGVRL+RTNL  EDV+  KE+L QSLFDHIPVGVG+Q                      +  L+LG       G    ED       G        KVS+RAK RGLPQLGTLGAGNHYAEIQVVEE+YDE  AKKMGID+  QVC+MIHSGSRGLGHQVATDALV ME AMARD I  NDRQLACA+I SQEGQ+Y+A M+AAANYAWVNR+ MTFLTR+AF+K F  + E+LDMH++YDVSHNIAKVEQH+VDG    LLVHRKG+TRAFPPHHPLIPVDYQ TGQPVIVGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA SRN+SR  LDY  VL  LE  GISIRVASPKL+MEEAPESYKDVT+VV TCH AG+S +AVKL+PIAV+KG
Sbjct:    6 KRSYEQEKNYLQRESSSMYTIKEGFVPNMTVPGKFYVNSALERLVFDEVRSYSKQSDTTGGFLPALKQIGNVAALPGIVKYSIGLPDIHSGYGFAIGNVAAFNMADPTAVVSPGGVGFDINCGVRLLRTNLMYEDVMDKKEQLAQSLFDHIPVGVGSQGIIPTKAQDM------------EEALQLGIDWSLREGYAWPEDKEHCEEYGRMLAADPNKVSQRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDEFVAKKMGIDQKGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGIRTNDRQLACARIQSQEGQNYIAAMSAAANYAWVNRSSMTFLTRQAFAKVFNLSPEDLDMHLIYDVSHNIAKVEQHMVDGQNMELLVHRKGSTRAFPPHHPLIPVDYQLTGQPVIVGGTMGTCSYVLTGTEKGMRETFGSTCHGAGRALSRNKSRNNLDYSEVLKRLEDLGISIRVASPKLIMEEAPESYKDVTQVVETCHQAGISKKAVKLKPIAVVKG 510
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A7S3BHP6_9VIRI (RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3BHP6_9VIRI)

HSP 1 Score: 686 bits (1770), Expect = 7.410e-242
Identity = 354/523 (67.69%), Postives = 409/523 (78.20%), Query Frame = 2 
Query:   71 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELR----QQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAGGSYK--------------GKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            RSY+EE +++ R D QR+RI  GFVPNM V G FY N++L+ L   EL     +  GG    GFLPAVKQIANVAALPGVV  S+GLPDVHSGYGFA+GNVAAFDM DP+A+VSPGGVGFDINCGVRL+RTNLT  DVLP+KEEL QSLFDHIPVGVG+Q              GD + ++           G    VRE  A    K               KVS RAK RGLPQ+GTLGAGNHYAE+QVV+E++DE+AA KMGI+ V QV +MIHSGSRGLGHQVATD+L  ME AMARD I++NDRQLACA+I S+EGQDYL  MAAAANYAWVNR+ MTFL R+AF+K F KT +ELDMHV+YDVSHNIAK+E+H+V+G+LK LLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFGSTCHGAGRA+SRN+SR  LDY+ VL  L+ KGISIRVASPKLVMEEAPESYKDV +VV TCH AG+S +AVKLRPIAV+KG
Sbjct:   20 RSYDEEIAYLERVDDQRWRIKAGFVPNMNVDGMFYVNEKLQGLALGELEVACERAKGGXXXXGFLPAVKQIANVAALPGVVGHSVGLPDVHSGYGFAIGNVAAFDMDDPEAIVSPGGVGFDINCGVRLIRTNLTEADVLPIKEELAQSLFDHIPVGVGSQGIIPTTA-------GDLNEVLEM---------GMDWSVREGFAWVEDKEHCEEYGRMLTADPNKVSTRAKKRGLPQMGTLGAGNHYAEVQVVDEIFDERAASKMGINSVGQVVVMIHSGSRGLGHQVATDSLTAMERAMARDGIEVNDRQLACARIGSKEGQDYLQAMAAAANYAWVNRSSMTFLVRQAFAKAFKKTPDELDMHVIYDVSHNIAKMEEHVVNGELKRLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMRETFGSTCHGAGRAQSRNKSRHNLDYQQVLDALKAKGISIRVASPKLVMEEAPESYKDVCQVVETCHMAGISKKAVKLRPIAVVKG 526
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A812VVI5_SYMPI (RNA-splicing ligase RtcB homolog n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VVI5_SYMPI)

HSP 1 Score: 685 bits (1768), Expect = 8.050e-242
Identity = 357/510 (70.00%), Postives = 400/510 (78.43%), Query Frame = 2 
Query:   65 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSG-GNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAG--GSYKGKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            +KRS+ +E  F+ RED   + I PGFV  M VPG FY ND+LE+L  +ELR  S   +  GGFLPAVKQI NVAALPG+VK SIGLPD+HSGYGFA+GNVAAFDM  PDAVVSPGGVGFDINCGVRLVRTNL   DV PVKE L QSLFDHIPVGVG+                +  +L     LR G      +   E+      +  GKVS RAK RGLPQLGTLGAGNHYAEIQVV+E+YDE  AKKMGID+  QVC+MIHSGSRGLGHQVATDALV ME AM RDNI  NDRQLACA+I S EGQ+YL GM+AAANYAWVNR+ MTFLTR+AF+K F ++ E+LDMHV+YDVSHNIAKVE+H VDG  K LLVHRKG+TRAFPPHHPLIPVDYQ TGQPVIVGGTMGTCSYVLTGT KGM ETFGSTCHGAGRA SRN+SR  LDY  VL  LE  GISIRVASPKL+MEEAPESYKDVT+VV TCHDAG+S +A+KL+P+AV+KG
Sbjct:    4 IKRSFNDEMGFLKREDSTCYSIRPGFVTGMNVPGKFYVNDQLERLMIDELRSFSRQSHNAGGFLPAVKQIGNVAALPGIVKYSIGLPDIHSGYGFAIGNVAAFDMGLPDAVVSPGGVGFDINCGVRLVRTNLLYSDVQPVKETLAQSLFDHIPVGVGSMGIIPTKEQDLE----EALQLGIDFSLREGYAWPEDKEHCEEYGRMLNADPGKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDEFVAKKMGIDQKGQVCVMIHSGSRGLGHQVATDALVDMERAMTRDNIRTNDRQLACARIHSDEGQNYLKGMSAAANYAWVNRSSMTFLTRQAFAKVFNQSPEDLDMHVIYDVSHNIAKVEEHFVDGQCKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVIVGGTMGTCSYVLTGTDKGMRETFGSTCHGAGRALSRNKSRNNLDYGDVLKRLEDMGISIRVASPKLIMEEAPESYKDVTQVVQTCHDAGISKKAIKLKPVAVVKG 509
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A315VIM7_GAMAF (RNA-splicing ligase RtcB homolog n=3 Tax=Cyprinodontiformes TaxID=28738 RepID=A0A315VIM7_GAMAF)

HSP 1 Score: 691 bits (1783), Expect = 8.600e-242
Identity = 356/522 (68.20%), Postives = 405/522 (77.59%), Query Frame = 2 
Query:   62 TMKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDAAGGSYK--------------GKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            TM RSY +E  F+ +     +RI  GFVPNM+V G FY ND LEKL FEELR    G G GGFLPA+KQI NVAALPG+V  SIGLPDVHSGYGFA+GN+AAFDM DP+AVVSPGGVGFDINCGVRL+RTNL   DV PVKE+L QSLFDHIPVGVG++                    +  + L      G    +RE  A    K               KVS +AK RGLPQLGTLGAGNHYAEIQVV+E+Y+E AAKKMGID   QVC+MIHSGSRGLGHQVATDALV ME AM RD I +NDRQLACA+I+SQEGQDYL GMAAA NYAWVNR+ MTFLTR+AFSK FG T ++LDMHV+YDVSHNIAKVE+H+VDG  +TLLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFG+TCHGAGRA SR +SR+ LD++ VL  L   GI+IRVASPKLVMEEAPESYK+VT+VVNTCHDAG+S +A+KLRPIAVIKG
Sbjct:  153 TMSRSYNDELQFLEKTGSTSWRIKKGFVPNMQVEGVFYVNDSLEKLIFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSPGGVGFDINCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIP----------------MGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITSQEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEEHMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMAETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 658
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BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Match: A0A7S4RZI4_9DINO (RNA-splicing ligase RtcB homolog n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RZI4_9DINO)

HSP 1 Score: 684 bits (1766), Expect = 3.340e-241
Identity = 361/517 (69.83%), Postives = 400/517 (77.37%), Query Frame = 2 
Query:   68 KRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGNGG-GGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVR--EDAAGGSYKG--------KVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1585
            KR+YEEE S++TRE    F I  GFVP M VPG FY N  LE L  EEL+  S  +   GGFLPAVKQIANVAALPG+VK S+G+PDVHSGYGFA+GN AAFDM DP AVVSPGGVGFDINCGVRL+RTNL   DV PVKE L QSLFDHIPVGVG+Q                         L+LG       G    ED       G        KVS RAK RGLPQ+GTLGAGNHYAEIQVVEE+YDE  AKKMGID+ NQVC+MIHSGSRGLGHQVATDALV ME AMARD+I +NDRQLACA+I SQEGQ+YLA MAAAANYAWVNR+ MTFLTR+AFSK F ++ E+LDM ++YDVSHNIAK+E+H+VDG    LLVHRKGATRAFPPHHPLIPVDYQ TGQPVIVGGTMGTCSYVLTGT  GM +TFGSTCHGAGRA SRN+SR  LDY+ VLG LE+KGISIRVASPKLVMEEAPESYKDV +V +TCH AG+S +AVKLRPIAV+KG
Sbjct:   25 KRTYEEEMSYLTRETDSMFSIKTGFVPGMNVPGKFYVNSALETLMTEELKSFSRQSQNVGGFLPAVKQIANVAALPGIVKHSVGMPDVHSGYGFAIGNAAAFDMNDPQAVVSPGGVGFDINCGVRLLRTNLLFSDVEPVKERLAQSLFDHIPVGVGSQGIIPTKNSDLEEV------------LQLGVDWSLREGYAWPEDKEHCEEFGRMLNADPSKVSARAKKRGLPQMGTLGAGNHYAEIQVVEEIYDEFVAKKMGIDQKNQVCVMIHSGSRGLGHQVATDALVEMERAMARDDIQVNDRQLACARIQSQEGQNYLAAMAAAANYAWVNRSSMTFLTRQAFSKVFNQSPEDLDMFMIYDVSHNIAKIEEHMVDGKEMQLLVHRKGATRAFPPHHPLIPVDYQLTGQPVIVGGTMGTCSYVLTGTTVGMRDTFGSTCHGAGRALSRNKSRNNLDYKDVLGRLEEKGISIRVASPKLVMEEAPESYKDVIQVADTCHAAGISKKAVKLRPIAVVKG 529
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5743.16152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS68_ECTSI0.000e+088.37RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu... [more]
A0A7S1GE03_9STRA8.030e-25069.36RNA-splicing ligase RtcB homolog n=1 Tax=Bicosoeci... [more]
K8FAV9_9CHLO1.120e-24469.62RNA-splicing ligase RtcB homolog n=1 Tax=Bathycocc... [more]
A0A2I4D653_9TELE2.590e-24467.95RNA-splicing ligase RtcB homolog n=28 Tax=Gnathost... [more]
W7TEQ9_9STRA4.150e-24268.74RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsi... [more]
A0A7S1AJX4_NOCSC4.150e-24269.25RNA-splicing ligase RtcB homolog n=1 Tax=Noctiluca... [more]
A0A7S3BHP6_9VIRI7.410e-24267.69RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota... [more]
A0A812VVI5_SYMPI8.050e-24270.00RNA-splicing ligase RtcB homolog n=1 Tax=Symbiodin... [more]
A0A315VIM7_GAMAF8.600e-24268.20RNA-splicing ligase RtcB homolog n=3 Tax=Cyprinodo... [more]
A0A7S4RZI4_9DINO3.340e-24169.83RNA-splicing ligase RtcB homolog n=1 Tax=Alexandri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5743contigEcto-sp13_S_contig5743:215..7656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score877.9
Seed ortholog evalue2.3e-252
Seed eggNOG ortholog2880.D7FS68
Preferred nameRTCB
Model size1855
KEGG koko:K14415
GOsGO:0000003,GO:0000378,GO:0000394,GO:0000968,GO:0000971,GO:0001701,GO:0001890,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016070,GO:0016874,GO:0016886,GO:0017166,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040025,GO:0042175,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072669,GO:0080090,GO:0090304,GO:0098827,GO:0140098,GO:1901360,GO:1903326,GO:1903328,GO:2000235,GO:2000237
Exons10
EggNOG free text desc.RNA ligase (ATP) activity
EggNOG OGsCOG1690@1,KOG3833@2759
Ec32 ortholog descriptiontRNA-splicing ligase, RtcB
Ec32 orthologEc-01_000760.1
EC6.5.1.3
Cds size1524
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5743.16152.1prot_Ecto-sp13_S_contig5743.16152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5743 482..7592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.6124642-UTR-Ecto-sp13_S_contig5743:214..4811681463795.6124642-UTR-Ecto-sp13_S_contig5743:214..481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5743 215..481 -
1681463795.7320616-UTR-Ecto-sp13_S_contig5743:7592..76561681463795.7320616-UTR-Ecto-sp13_S_contig5743:7592..7656Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5743 7593..7656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.6253448-CDS-Ecto-sp13_S_contig5743:481..6801681463795.6253448-CDS-Ecto-sp13_S_contig5743:481..680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 482..680 -
1681463795.635884-CDS-Ecto-sp13_S_contig5743:1088..13361681463795.635884-CDS-Ecto-sp13_S_contig5743:1088..1336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 1089..1336 -
1681463795.646649-CDS-Ecto-sp13_S_contig5743:1845..20131681463795.646649-CDS-Ecto-sp13_S_contig5743:1845..2013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 1846..2013 -
1681463795.657015-CDS-Ecto-sp13_S_contig5743:2794..29381681463795.657015-CDS-Ecto-sp13_S_contig5743:2794..2938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 2795..2938 -
1681463795.6667883-CDS-Ecto-sp13_S_contig5743:3373..35141681463795.6667883-CDS-Ecto-sp13_S_contig5743:3373..3514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 3374..3514 -
1681463795.6785305-CDS-Ecto-sp13_S_contig5743:4452..45601681463795.6785305-CDS-Ecto-sp13_S_contig5743:4452..4560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 4453..4560 -
1681463795.6869626-CDS-Ecto-sp13_S_contig5743:5157..53331681463795.6869626-CDS-Ecto-sp13_S_contig5743:5157..5333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 5158..5333 -
1681463795.6956115-CDS-Ecto-sp13_S_contig5743:5669..57691681463795.6956115-CDS-Ecto-sp13_S_contig5743:5669..5769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 5670..5769 -
1681463795.7056406-CDS-Ecto-sp13_S_contig5743:6796..69431681463795.7056406-CDS-Ecto-sp13_S_contig5743:6796..6943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 6797..6943 -
1681463795.7232182-CDS-Ecto-sp13_S_contig5743:7499..75921681463795.7232182-CDS-Ecto-sp13_S_contig5743:7499..7592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5743 7500..7592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5743.16152.1

>prot_Ecto-sp13_S_contig5743.16152.1 ID=prot_Ecto-sp13_S_contig5743.16152.1|Name=mRNA_Ecto-sp13_S_contig5743.16152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=508bp
MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEEL
RQQSGGNGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVA
AFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDH
IPVGVGTQXXXXXXXXXXXXXXGDGHRLVHQRRLRLGRGQGALRGVREDA
AGGSYKGKVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGI
DKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKI
SSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVV
YDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQP
VIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAV
LGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLR
PIAVIKG*
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mRNA from alignment at Ecto-sp13_S_contig5743:215..7656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5743.16152.1 ID=mRNA_Ecto-sp13_S_contig5743.16152.1|Name=mRNA_Ecto-sp13_S_contig5743.16152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7442bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5743:215..7656- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAGAGCTTCTAACCGCACGTCTTTGCTCACTGACTCTCCACACTGCCA
CCGCGTGAACAACCATGAAGAGATCGTACGAAGAAGAGAAGTCTTTCATC
ACGAGGGAAGATGGACAGCGGTTCCGTATCGATCCCGGTTTCGTCCCCAA
CATGAAAGTGAGTTGCAGTTAAAAAAAAAAAAGTGAGTCGTTGTGCGCAT
TGCTGCAGAGAGCACGGCAGACATTCAACTTTAACAGCAGTAGTAACAGC
AGTGTGGCGCGCACAATTACACTTCAGCACTCACGATGAGAAACGTGTTA
CACATATTTATTTGATATGCATACAATGGGCGTGCTGTATTTATTTTTTC
CATCAAATACAATTCATAGAGCGGGTTTGTCCGAAGGCGTATCCGAGTGT
GAGCCCCCTTTCTGCGTGACGCTTTCGCTTCCATCCAACCTTTGATTGTA
CTCATCTCTACACGTTTATTCATGTGGGGGAGTGATAATGTCGATGACAC
CTCCCGAGTATCGAGACTCGGAAAGGCAATGGCGAGTACTCTGCTGCCCC
GCGAATTCGCAAAATCAAGGGCTTCGGCATGTTGTTTTCTGTAATAGATC
GTGGAAGGTGATAAGCGTAGACCGGAAAGGTGTTTGATGTGAAGACAACA
ACAGCAGCATCAGCCAGTACCCATCCCTCCGTTTGCTGCACGCGCGAACG
ACGCACGTGGCAGGTGCCTGGGTACTTCTACGCGAACGATCGGCTGGAGA
AGCTGACTTTCGAGGAGCTGAGGCAGCAGTCCGGCGGGAACGGAGGCGGG
GGGTTTCTGCCCGCGGTGAAGCAGATCGCTAACGTGGCTGCGCTCCCTGG
GGTTGTCAAGGTCGGGTTTTCGGTCTGTTCATGAGCAAAGGGGTGTTGGT
GGGAAAAACTACCGTGCGTTGCAAAGATGCCACGCACACCCTTAATCGAC
ATTCAAAGCTCGAATTGATTACTATGCAGCAAGGAAAATGACAGCAGTGT
CGAGATTGGTGGAGCTCGAACTCCGTCTCGGCGAGAGCTTTCGGAGAACG
TACAATGATTATGGCATCCTCTTTGTCGTGGAGCAATCGGGCTTTGAACA
GTGGTCCACAGGGTGTGGTATCTTGTGCAACCTCCGGTAGATCGTCGATG
TGGGGTGCACTTGCAGACTAGAGTAAGAGTGTGAGTCAACAGAACACTCC
ACTCGACGGGGCATCACACGTAGCTCGATTGCTCCACGACGAACAGGTTG
CCAATGTCAGGAAGGGTAGCTTTGGAAGTGCTTCCCTAAGAACGTTCCTC
GCGCATGCATCGATCGGTTTTCGCATCCTCTTCGTAATGAGGCAATCGAG
CTTTGATTTTCGGCCTATGTAGGGGGCGAGAGGATTCGCGCGCCTTGACG
GTATTTATTCTCGGAGGACGAGGACCCACCGGGAAGTTTCGCCCAACCGC
ATCAAGTGCGGGAAAAAAAAGTAATGAATGCTGGAATCTTCGTACATTTC
CGGAAATGGCACGAACGGCCCAGGTCTATACCGCTGTATTGCCATAGGAG
GCATTTGGCTCCTTGGACGGCAAGCTGCCAGCCACAGCGGACGTTACTTT
TCTGTTGTGTTTCTGGTGCGAGGTACATAAATTTGTGGGTACACCGCAGC
ACAGCAGTAGGCACTTGTTCTGATTCTCAACACCGGGTGGCAGTTTGTTC
TTCCTGGTTGGTGCGGTAGACAATCCTTCCTTGTAGTGAGCACCCTGCTG
GCGTTTGCTGACGATTAGACGGGGGACCCGCGGCTTGAAGTAAACCCACC
TCTCGGTGTGCAATAGACGAACGCGAGGACCCGCTTGTGGTGAACGAGCA
CGCTCGCTGCCCGCTCCCCTCCTGGCGAATCACACAGGGATCCATCGGCT
TGCCTGACGTGCACTCGGGATATGGCTTCGCCGTCGGAAACGTGGCCGCC
TTCGACATGGCCGATCCGGACGCTGTGGTGTCGCCAGGTGAAGCATGCGT
ACGCATTCATGTGTGTTTTGTGTGTTCCTTTAGTCTGGGTGTTCAGCATC
CTCAGCTGTAATACCGGCGTATTGTGAAGACGGCACACGACGATAACAAC
AACAACGACAATGACTAGAGGTGCATACCGCCCTACCCCTGAGGTTTCCA
TCACCACACTGTACCTTCCTTGCGATTTTATCGCAAGGGCCAGGAAAGGC
CAAGGACACAAACACCAATGGTACAAGATTCGAGCATTCCCACTCCGTCT
GTCCGTCGATTATGTATGTAGGCTGTTGACGCCTACTTTTCCATCCGCAT
GTACACCCTGACAATACAAGCAGGCGGGGTGGGCTTCGACATCAACTGCG
GTGTCCGGCTGGTGCGAACAAACCTGACGCTGGAGGACGTCCTCCCCGTG
AAGGAGGAGCTAACGCAGTCGCTGTTCGACCACATCCCGGTCGGCGTCGG
TACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTTGGTGGAGGTGTTGGTG
GTGTCGCCATCGTTTGTATTGTTGTTATTGGCGGTGGTGGGGGTAGTGAT
GGCGTCAGCTGTGGGGGTGATGGTGGTGATAACAGCGACGGTACAAGATG
AGGTGATTGACCAGTAAGTTATCTGTTGTCGATTGCTTACCAGGTTTAGT
TTGCTCGTTGTTTTCATGCTGCGATAGCAAAGCACTGGAACCCGTGCTGT
ACGATTTTTCTCGTGTGTTTTTTTCACGGTGATGCTCTTTATGTGTCTCC
CCCCCTCCCCCGTCCCGAAAAACCGGTTGTGGATCGCACCGATGCAGGAG
ATGGGCATCGACTGGTCCATCAGAGAAGGCTACGCTTGGGTAGAGGACAA
GGAGCACTGCGAGGAGTACGGGAGGATGCTGCAGGCGGATCCTACAAAGG
CAAGGTTGGTTCGATTCAATCGCATACCGTGCTTCTAGTATCAGCGGCGG
TGGCGCACACTTCCAGGAGGGGGCTCCCTCAGCAAGCCCGTCAGTACGCT
TTGACCATCGTCTTGCTTAGAGACTACTGTGGGTGGCGTGACGTAAGATA
TCACACCCCCTGGACCAATTTTTAAAGCTCGATTACGTAGAATGAGTATG
CCAAACTCACAGGATATATTTTAAGCAAGCTCTCGTTGAGACCGTTCTAA
CGCCGCAATTTTCGGGAACCGTAACTGTTTTTGCTGTAAAATCGAGCTTG
AAAGTAGGTCCAGGGGGGTGCGACCTCCGGTACGTTGCAGGTTTTGGCCA
CGTGTTGCACGCACGGCGCTGACTGGCGTGCAGGATGGTGTGTAGGTTCC
CACGTACAGGATGGACAGGTGCAATGCTTGTGCAGTTTTTTTGTTTTTGA
TGGGGCAAGGCGTAGCCCGCGTCGGTGATGGCCACCGTAGCATGTTCACG
AGGCTGTCATCTCTCTGCTTAGGACGGCCCGCGACATGTGCGTGGCTCGG
CAACAGCTTCTGCGCAACGCACCAGACCGTCCTTCAGCTTCGCGCACGAC
ATTTCCTGCACAGTGAAGGTTGACTTCACCTTCCTCTTCTACCCCTAAAA
TAATACACGAGCATGCCTCCAGTTGACTTCACCCACGTTCCTTTTCTACC
CCTTCTACCCCTTCTACGCAAACTGCCTGTACATTTTCGGTTAACCTCTC
ACCAACGTTCCTTTCCCACCCCTAGGACACGACCATTCCCGTACATTCTA
AGGTTGACTTGACCCACATTCCTTTTTCCACCCCTAGTACGGGAACATGC
CCGTACATTTTTGAGGTTGACTTCGTGCACATTCCTTTCTCCACCCCTGT
TTCTTATCTCTATGCCGCGACGGCGTGCGAACTTCCTTGCAGGTGAGCAG
GCGTGCCAAGATCCGTGGCCTGCCGCAACTGGGCACCTTGGGCGCGGGCA
ACCACTACGCCGAGATCCAGGTAGTGGAGGAGGTTTACGACGAGCAGGCC
GCCAAGAAAATGGGCATCGACAAGGTTAACCAGGTGCGCGACGAGTGTTC
GTGTGGACTGACCGACTGCCTCGACTGCTGAGTGTCCACTGCTGCTACTA
CCCGGCAGCCCTGCTGTCTATCTATGTGTCGGCGAGCGGGCGGTTGTTGT
CAGACCATTGCTACCGCTGTGTCTCCTGTGGCACCGTTGTGATTGCCGTA
GAATTGAGATGCTAGTCGCGCGCAGTGGCGGTTTGTTAGATGCTGTTGCC
GGCTTGGGGAGAGGATAGCCTCCCCTGTTCTGTGCTATATCAGTAGAGTT
TTCAAGTGTGCCCCGCATTGCACGCCTCTTTGTTTTTTCTCCGGCCGTAG
CTCGCTGTCGTCTTTGTATTGTCCGGGATTCTCCCTCGTGCCCTTATGTA
CTGCTCCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGTTGTCGAT
GCCTCGCGAGGCGTGCAGGTTTGCATCATGATCCACAGCGGAAGCCGCGG
GCTGGGGCACCAGGTGGCCACAGACGCCCTCGTGTTGATGGAGGCGGCCA
TGGCAAGAGACAATATCGACATCAACGATCGCCAGCTCGCATGCGCCAAG
ATCAGCAGCCAGGTGACGATTGCACATGAGAGGCCCAGCCGGTACAAGAC
TCTGTGAACAGATTTTTCATCTTCTTTTTTTTTTTAGGTTCGCCGGGCTC
TTCGAGTCAAAAATACGTCAGCTGTGTGAGCTGTTCGACCTTGGGAAGCG
TCACTGATGGCAACCCCCAAGCACATGCTATACCTTTAATCTTACATCAC
GCCTTGATGCCCAACCACGACACTCTGATGAATTCACTCCGAATGGGGGC
CTTGAAGGCTCCCTAAATAAAAGTAGGAGAACTTGTTCGAATACATGTTT
GCGTGAACAATGTTTCGAACGGGAAGCACCTCGGGGAGGCGTGATGGCTG
GCCAAGAGCGACCCCCCCCCCCCCCCCCAGGGCTCAAGATTGGGTTTTTG
ACTGCATTCCGGGGCGGTTCACCCCGATCGCTATCCGTTCTTGCGGGGGG
GGTGACGTGTAAGAGGGTATTCGTTGCTTGGGGTGGGGGGGGAGGAGGCT
TCGCAAACTATTGCGGTAAATACCACCGTAGAAGGCGTTTGCGTTTCGCC
TTCCATTCGCACCTACGCATACCAACTCATACGTGTTGTTCCAGCGACCC
ATGACGTGACGCCTTCATCGTGAAGATGGCTATGTCCCTGGTCAAGACCG
CCTGTGGCCAACGAATTAGACTGGTCATGTACCCGACACGTTCAATGTGT
ATATCACGCTATTCCACCGGCCTTTTACACGAACAACTACTCTGATTACA
CTGCCGCCGTCTTTGTGCCACGGAACCTCCCCCCCCTCCCCAGGAGGGGC
AAGACTACTTGGCGGGGATGGCTGCGGCAGCAAACTACGCCTGGGTCAAC
CGCGCGATGATGACGTTCCTCACGCGACGGGCCTTCTCGAAGAAGTTTGG
CAAGACGGCAGAGGAGCTGGACATGCACGTCGTTTACGACGTTTCGCACA
ACATCGCCAAGGTATGTACGTTGGGAGGCAGCCTGCTCCTTTCTGTTGCT
GTTGTATTTGAAGTCGGCATCAAGGCTAATGGTTTGATTCGGCCTCCGTT
GACGTTAGTCGTGGGTTCAACACCCAGGCTCAACATTAGCCCTGACTAGT
CTTCTGGTTTGATTCGGCTCCTTTGTGTCACCGATGGCGCGTTTGGTGGT
TGTAAACAGTCGCGTCGATTCCCCCATTTGTTGGTGCGACTGAGAGAGAC
GGCGTGTGCAATTGGAAGCGTGTCGGTGACGGCCGCGATACCAAACGGGG
CTTGCATGCAACTGCGTCTGTCTTATAAACACTGCCTCGTGCAGGTCGGA
GTCCGCCCGCCCCCCTCTCTTTTTTTTTTCGCGTGATCTTGTTGCTGCGC
GGGATCCCTCCGCCACCTCGTGTGCGTGGCGAGAAACTCTTCGTTATGTA
AACATGGGCAACGGGTTGTTTTACATGGTTCGATACACGACCCCATTTTT
CGAACATACAACGCTTGCAGGTGGAGCAGCACATCGTGGATGGCGACCTG
AAGACGCTGTTGGTCCACAGAAAGGGCGCCACTCGCGCTTTCCCCCCTCA
CCACCCCCTGATACCGGTAGACTACCAGTTCACGGGGCAGCCGGTTATAG
TTGGAGGCACCATGGGAACCTGCAGCTACGTCCTAACCGGCACGCAGAAG
GGCATGGATGAGACGTTCGGTAGCACTTGCCACGGAGCCGGGCGTGCCAA
GAGTAGAAACGAGTCCAGGTGAGCGCCTTTCTATTGTTGTTTTGTCTCTC
TTTTTTTTGCAGTATAATGTACCACCCGTTTCTGACCTATTACCCTTCTG
CTTGACGCTCGTCCTAATTGACTGAATAGGCAACAATTTCTTTTAGACTC
ATGTGAGGAAGCAGCACTACTATACCTGTTTTTCGTCGTTTTTTATGACA
CGCCGGTGGATTTACCTTCTTCGGAAAGGGAGGGGGGAAATGTTGTCTCT
CAGTGCGGGGGTTGAGATTATGCCGCGGGCGGCGAGCTTTTTGTCGTAAC
ATGTGGATAGTCCTGTCCGTACATGGCAAACATATACGCACGTAATTATC
GTAATTAATTCCTGTAAATAACAAGAGTGCCTCTCGCTGTTCGTTTTGTC
CGGCGATTCGCCCGACGGTTCCACAGGAAAACTCTGGACTACGAAGCAGT
GCTTGGGGGGTTGGAGAAGAAGGGCATATCAATTAGAGTGGCCAGCCCTA
AGCTAGTCATGGAGGAAGCACCGGAGAGCTACAAAGACGTGACGGAAGTG
GTGAACACATGCCACGACGCTGGGGTATCCATGAGGGCTGTCAAGCTCAG
GCCTATTGCGGTCATCAAAGGCTGAACGAATGGGTTGATTTGATTGGTTG
GTTGGTTTGCGTTCAACGGGTGTTAGGGGTGGCGGGGTGATGATGCACAT
TTGGTGATGAGTGCGTTGTTCTTTGTTTTTTGTTTTGTTTAGAAGGTGAC
GGTGCTGCTAGCTGAAGATCAGTGTGGCCGTAGGGATATCGAAGCGGGGG
GCGGAGGAGTTATTTGTGGGGGTGTTGTTGTTGTTTGCGTCTTGTCTTGT
TCTGGTTTTCGGGTGGTGGACGCTCAGAACACCATGTACACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5743:215..7656-

>mRNA_Ecto-sp13_S_contig5743.16152.1 ID=mRNA_Ecto-sp13_S_contig5743.16152.1|Name=mRNA_Ecto-sp13_S_contig5743.16152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5743:215..7656- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGATCGTACGAAGAAGAGAAGTCTTTCATCACGAGGGAAGATGG
ACAGCGGTTCCGTATCGATCCCGGTTTCGTCCCCAACATGAAAGTGCCTG
GGTACTTCTACGCGAACGATCGGCTGGAGAAGCTGACTTTCGAGGAGCTG
AGGCAGCAGTCCGGCGGGAACGGAGGCGGGGGGTTTCTGCCCGCGGTGAA
GCAGATCGCTAACGTGGCTGCGCTCCCTGGGGTTGTCAAGGGATCCATCG
GCTTGCCTGACGTGCACTCGGGATATGGCTTCGCCGTCGGAAACGTGGCC
GCCTTCGACATGGCCGATCCGGACGCTGTGGTGTCGCCAGGCGGGGTGGG
CTTCGACATCAACTGCGGTGTCCGGCTGGTGCGAACAAACCTGACGCTGG
AGGACGTCCTCCCCGTGAAGGAGGAGCTAACGCAGTCGCTGTTCGACCAC
ATCCCGGTCGGCGTCGGTACTCAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGAGATGGGCATCGACTGGTCCATCAGAGAAGGC
TACGCTTGGGTAGAGGACAAGGAGCACTGCGAGGAGTACGGGAGGATGCT
GCAGGCGGATCCTACAAAGGCAAGGTGAGCAGGCGTGCCAAGATCCGTGG
CCTGCCGCAACTGGGCACCTTGGGCGCGGGCAACCACTACGCCGAGATCC
AGGTAGTGGAGGAGGTTTACGACGAGCAGGCCGCCAAGAAAATGGGCATC
GACAAGGTTAACCAGGTTTGCATCATGATCCACAGCGGAAGCCGCGGGCT
GGGGCACCAGGTGGCCACAGACGCCCTCGTGTTGATGGAGGCGGCCATGG
CAAGAGACAATATCGACATCAACGATCGCCAGCTCGCATGCGCCAAGATC
AGCAGCCAGGAGGGGCAAGACTACTTGGCGGGGATGGCTGCGGCAGCAAA
CTACGCCTGGGTCAACCGCGCGATGATGACGTTCCTCACGCGACGGGCCT
TCTCGAAGAAGTTTGGCAAGACGGCAGAGGAGCTGGACATGCACGTCGTT
TACGACGTTTCGCACAACATCGCCAAGGTGGAGCAGCACATCGTGGATGG
CGACCTGAAGACGCTGTTGGTCCACAGAAAGGGCGCCACTCGCGCTTTCC
CCCCTCACCACCCCCTGATACCGGTAGACTACCAGTTCACGGGGCAGCCG
GTTATAGTTGGAGGCACCATGGGAACCTGCAGCTACGTCCTAACCGGCAC
GCAGAAGGGCATGGATGAGACGTTCGGTAGCACTTGCCACGGAGCCGGGC
GTGCCAAGAGTAGAAACGAGTCCAGGAAAACTCTGGACTACGAAGCAGTG
CTTGGGGGGTTGGAGAAGAAGGGCATATCAATTAGAGTGGCCAGCCCTAA
GCTAGTCATGGAGGAAGCACCGGAGAGCTACAAAGACGTGACGGAAGTGG
TGAACACATGCCACGACGCTGGGGTATCCATGAGGGCTGTCAAGCTCAGG
CCTATTGCGGTCATCAAAGGCTGA
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