mRNA_Ecto-sp13_S_contig101344.162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101344.162.1
Unique NamemRNA_Ecto-sp13_S_contig101344.162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Match: Q8QNL0_ESV1K (EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL0_ESV1K)

HSP 1 Score: 121 bits (303), Expect = 1.680e-34
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 MEANLAPRQSPPPL---------VQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRSRGIVMLDKCRFNHFCAFV 204
            M AN  PRQ+P            VQP GVTFRHSDDTWYSENEDELLDIWHAVQD I+SRGIVMLDKCRFNHFCAFV
Sbjct:    1 MNANSPPRQTPXXXXXXXXXXXXVQPQGVTFRHSDDTWYSENEDELLDIWHAVQDIIKSRGIVMLDKCRFNHFCAFV 77
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BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Match: D8LP94_ECTSI (EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP94_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.400e-34
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 MEANLAPRQSPPPL---------VQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRSRGIVMLDKCRFNHFCAFV 204
            MEAN   RQ+PPP          V+P GVTFRHSDDTWYSENED+LLDIWH +QD I+SRGIVMLDKCRFNHFCAFV
Sbjct:    1 MEANAPLRQTPPPXXXXXXXLPPVKPQGVTFRHSDDTWYSENEDDLLDIWHTLQDIIKSRGIVMLDKCRFNHFCAFV 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL0_ESV1K1.680e-3475.32EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP94_ECTSI3.400e-3472.73EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101344contigEcto-sp13_S_contig101344:301..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-61
Ec32 orthologEc-06_006180.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.0231702-CDS-Ecto-sp13_S_contig101344:300..5041681462510.0231702-CDS-Ecto-sp13_S_contig101344:300..504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101344 301..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101344.162.1prot_Ecto-sp13_S_contig101344.162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101344 301..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101344.162.1

>prot_Ecto-sp13_S_contig101344.162.1 ID=prot_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MEANLAPRQSPPPLVQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRS
RGIVMLDKCRFNHFCAFV
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mRNA from alignment at Ecto-sp13_S_contig101344:301..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101344.162.1 ID=mRNA_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101344:301..504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCGAATTTAGCCCCGCGACAGTCACCACCACCACTAGTGCAACC
ACATGGTGTCACATTTAGACACTCGGACGACACGTGGTACTCAGAAAACG
AAGACGAACTGCTCGATATTTGGCACGCTGTACAAGACACCATCCGAAGT
AGAGGAATTGTTATGTTGGATAAATGCAGGTTTAATCATTTTTGTGCGTT
CGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101344:301..504+

>mRNA_Ecto-sp13_S_contig101344.162.1 ID=mRNA_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101344:301..504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCGAATTTAGCCCCGCGACAGTCACCACCACCACTAGTGCAACC
ACATGGTGTCACATTTAGACACTCGGACGACACGTGGTACTCAGAAAACG
AAGACGAACTGCTCGATATTTGGCACGCTGTACAAGACACCATCCGAAGT
AGAGGAATTGTTATGTTGGATAAATGCAGGTTTAATCATTTTTGTGCGTT
CGTG
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