mRNA_Ecto-sp13_S_contig11897.1614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11897.1614.1
Unique NamemRNA_Ecto-sp13_S_contig11897.1614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11897.1614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11897contigEcto-sp13_S_contig11897:796..3483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005910.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462628.398245-CDS-Ecto-sp13_S_contig11897:795..9381681462628.398245-CDS-Ecto-sp13_S_contig11897:795..938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11897 796..938 -
1681462628.406828-CDS-Ecto-sp13_S_contig11897:1221..13831681462628.406828-CDS-Ecto-sp13_S_contig11897:1221..1383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11897 1222..1383 -
1681462628.4145062-CDS-Ecto-sp13_S_contig11897:3041..32361681462628.4145062-CDS-Ecto-sp13_S_contig11897:3041..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11897 3042..3236 -
1681462628.4223764-CDS-Ecto-sp13_S_contig11897:3461..34831681462628.4223764-CDS-Ecto-sp13_S_contig11897:3461..3483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11897 3462..3483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11897.1614.1prot_Ecto-sp13_S_contig11897.1614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11897 796..3483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11897.1614.1

>prot_Ecto-sp13_S_contig11897.1614.1 ID=prot_Ecto-sp13_S_contig11897.1614.1|Name=mRNA_Ecto-sp13_S_contig11897.1614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MSHDWEAAEFFAPRAGSIDAGVASAPAPASSGSGWRGGGNNIDDFSVPQQ
SAGSGSSSSRARGRGSGTGRGRGSRGAAAGGGRGRLPRAAPAAGSAAGRN
DFHLPQAHKKKKEQATTTKSKYKHRGGSFALLGQLWLFEQEGRMRPDIKT
LKSAAQRFCDESMEPVSVNVCSAV
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mRNA from alignment at Ecto-sp13_S_contig11897:796..3483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11897.1614.1 ID=mRNA_Ecto-sp13_S_contig11897.1614.1|Name=mRNA_Ecto-sp13_S_contig11897.1614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11897:796..3483- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGATTGGGAGGCAGGTGGGTCTTGGAATCCCCCACCTTGGCA
TGCGACCGAGGTTTCGCTCTCTCTTCCTCTCTATCTCTACATGTTGGCTC
CTCTTGTCTCCAGTTTTTTTCTGTTTTTCAAATGGATCCCTCAAAAATCA
TGATCTACAGCAGTAGCTTTCGCTAAGATAGAAGACCAACGGCAACCCCC
TCTATCACACTCTCACACTCTCCCGTCGTTATTAAATGAAATCTCAGCGG
AATTCTTCGCTCCTCGGGCCGGGAGTATCGACGCGGGAGTAGCATCGGCA
CCAGCGCCGGCAAGTTCAGGATCTGGTTGGCGAGGAGGAGGAAACAATAT
CGACGATTTCTCTGTTCCCCAGCAGTCTGCCGGCAGCGGCAGCAGCAGCA
GCAGGGCGAGGGGGAGGGGCAGCGGCACAGGGAGAGGGAGAGGTACGGGC
AAGTCGGCTTTGGTTTCGCTTCACCCACAATTGGATGCACCTGCACTTCT
CAGCGGGGGCGCCGCGGGCGACAACCTAATAATCGTTCATGTGATGCTGA
TTATACGCTTCGGGGTCGCGCGGATGAGAACTCAAAGGTCGATCTTGATT
TTGGGTGCTGTGCATACGTATCGTACAGCAGCAGTAGTAACACGAACGTG
TGTATCGGTACTTGATGAATATCCCGTACATCCTGAATTCCACACAAATC
TGTGAAGTCGAAAGCAACCTCAAGAGTAACCAGTGACCACACACGTGATA
CATATAACAGTTGGGCATAGTTGCGCAAGAGGAGGGAAAATGGGAAAATC
CCTCAGGTGCCGCGCAGAGCAGCGGTTGGGATTTGATTTCTACCAGGATA
CTGTAGCTCATCGTTTTAACGTTAAAAAGTTGCTCCTGAATCGAGGATAG
AGGACCCAATTTGGATGGACCCAATTGGCGTTTTGGTCAAAAGAGCTTGC
GTCAATTTTACGTAATTGTGCCACATCGAGGTTCAGCAACACCCAAATGC
GGCAGAATCGCTGCCGCGAGGTGACGTGGTGACCATCCAGGTACAGCGAT
AGACCATGTGCACCACACGGGAGCTGTAAAAAAATATCAGCACACACACG
AAGCTAAGCATCAGCATGAGGTGCCAGCGGTCCAGGCCTCATCCTCAGGC
TTCCTCTTACAACTGTTGTTTGGACTGTCTCGCTGCACACAACCGGCCGT
TGATTTTTGACATCGCACATACTAATTGGAGAGTAACCTCCACAGCAACC
CAACCAGCGCAAAAAGTTGGCACGCTCGCAGAATTATTGCAACACAGCTT
TTTCTCAGCGGCGGGCAGTGTGCAATGCGTGTGGGTGCCTCACGGCCGGT
GTGCCACATGCGGTCGCGTCAGGGGTAACGCCAACACGAGTTCAGCTCAT
CATGGGGGGTGCAAAAGGGGCGCAGTGCAACGGGGGTACTTTGATTCAGC
AAAAACAATTCAATTTGCAATTGTTCTTTGCTTCACTGAATATCGAAATC
CCGCTTTTCCGGGCAGAGAAAGCCTCATATTGTTTTTTCCTGTTGACCAA
TCAGCGTCTTTGGCCCCCGGCACTCCCCCAAACTTATTTTTGCAGGGCCT
CCATTTAGTTGCAGCGTTTAAAAGTTAAAACAGGTTTACCTCCACCTTGT
CTCAAATCAAGGCAACACAGGCGGCAAGGCGGGTTCCTTGCGTTTCAATG
TGTTGGTATTCGATGCTCAATTGGTAGAAGACACCACAGAGCAGCTAGTC
GCGCGTTGGCACGACCAGATCTATTGCTGGGGCCGTACTGTCGAAGGCGG
CAGGCGCGGTCCGAACGGCAGTCTTGTGGATCCTTACGATGCACGGCCCG
CTGCCGTTCGTGCCGTACAGCAGTCTCTTACACCACCGCTTTGCCTTCCT
CGCCCCTCGCTCTTCGATAACATGCGGTACACGAACTTGTATTGCGGTAT
TGCGCACACCCTACCTCGCAGCTCAAGTTTTCTTCCGGGGTGGGTGGACC
CCAATAGGGAGACAAGAGCAGCAATGTTTTGATGACATATTTTCCGCCAT
CATGTACTTCTTGCTGTCCATCAACGCGACGTTACGGTACGGGTAATTAG
GGTCGCGCGGTGCTGCCGCCGGCGGGGGGCGCGGCAGGCTTCCCCGCGCC
GCACCAGCAGCGGGTTCTGCAGCTGGAAGGAACGATTTCCATCTGCCACA
GGCGCACAAGAAGAAGAAGGAACAGGCTACAACAACAAAGTCAAAGTACA
AGCATAGGGGTGGTGAGTCATTCAGCCGATGACGCAAAGCTTGGCTTAGT
TGCCCCCCCCGGTTTGCTTGGTTTGGTGCCCAGTGGAGGCGTCTGACTCA
GACGTGCTGCTCGCATGAAGGCTACTACAGTAGAAAGCTAGAGAGTGCTT
TGGAGCCTTCACTGCTGTCTGTGTCCAGAGGGCTCCATGCGTAGCCTTCA
CGGCGAACTCTCATCAGTGACTGAGGCGCTGCAGCACGTGCACACCGACT
TTCGCCGTACCTCTCCGCTCCACTCGTTGCTTTATTTTTACACAGGGTCC
TTCGCTCTATTGGGACAACTCTGGCTTTTCGAGCAGGAAGGACGGATGCG
CCCGGACATAAAAACTCTCAAGTCTGCTGCGCAACGTTTTTGCGACGAGT
CGATGGAACCGGTGAGCGTTAACGTGTGTTCTGCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11897:796..3483-

>mRNA_Ecto-sp13_S_contig11897.1614.1 ID=mRNA_Ecto-sp13_S_contig11897.1614.1|Name=mRNA_Ecto-sp13_S_contig11897.1614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11897:796..3483- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGATTGGGAGGCAGCGGAATTCTTCGCTCCTCGGGCCGGGAG
TATCGACGCGGGAGTAGCATCGGCACCAGCGCCGGCAAGTTCAGGATCTG
GTTGGCGAGGAGGAGGAAACAATATCGACGATTTCTCTGTTCCCCAGCAG
TCTGCCGGCAGCGGCAGCAGCAGCAGCAGGGCGAGGGGGAGGGGCAGCGG
CACAGGGAGAGGGAGAGGGTCGCGCGGTGCTGCCGCCGGCGGGGGGCGCG
GCAGGCTTCCCCGCGCCGCACCAGCAGCGGGTTCTGCAGCTGGAAGGAAC
GATTTCCATCTGCCACAGGCGCACAAGAAGAAGAAGGAACAGGCTACAAC
AACAAAGTCAAAGTACAAGCATAGGGGTGGGTCCTTCGCTCTATTGGGAC
AACTCTGGCTTTTCGAGCAGGAAGGACGGATGCGCCCGGACATAAAAACT
CTCAAGTCTGCTGCGCAACGTTTTTGCGACGAGTCGATGGAACCGGTGAG
CGTTAACGTGTGTTCTGCTGTG
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