mRNA_Ecto-sp13_S_contig5671.16031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5671.16031.1
Unique NamemRNA_Ecto-sp13_S_contig5671.16031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: D7FKT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT2_ECTSI)

HSP 1 Score: 874 bits (2258), Expect = 4.650e-314
Identity = 565/639 (88.42%), Postives = 573/639 (89.67%), Query Frame = 1 
Query:    1 MGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMASSNKGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMKGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEGGGEEGG-RQNMDRGASGNFESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSDEGTTLASSP-RQRKSLTNI--SGTNGEMSDPQSPLARGQPPGQQQASVSGRTAPASGGGLQGYQPATPSSDGRGREDPSQRSQQRQQ-HAQPPRGRSMSSDSPERPGGPASGTAGGGTAERYVGGVGEAPAHKRQRSKSRSGRLVSQLKGIVGAGKGKSARKGGSSGALVMNGRGGHSLSDDDEEDSFEDDEWDVREQXXXXXXXXXXXXXXXXXXXXXXXXXGVVTAASRAAQLAEAREASRGHRRVSSATATMGAPIGNN-NLENRRSPPGSMSNLRXXXXXXXXXXXXATGSRLPRVPPAMPLSGSRGAGVGKGASGRGSALKPPAPRNSE 1899
            MGKDSPTPGVLLR+DHTKSKVYNALRRLEWQTNREVDKAVNNLMASSNKGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMKGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKL+HIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEG       RQNMDRGASGNFES XXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXX             R+RKSLTN   SGTNGEMSDPQSPLARGQP  Q QA VSGRTAPASGGGLQGYQPA PSSDGRGREDPSQRSQQRQQ HAQP RGRSMSSDSPER GGPASGTAGGG AER+VGG GEAPAHKRQRSKSRSGRLVSQL+GIVGAGKGKSAR+GG SGALVMNGRGGHSLSDDDEEDSFED+EWDVREQ      XXXXXXXXXXXXXX     GVVTAASRAAQL EAREASRGHRRVSSATATMG PIGNN NLENRRSPPGSMSNLR  XXXXXXXXX ATGSRLPRVPPAMPLSGSRGAGVG+GASGRGSALKPPAPRNSE
Sbjct:    1 MGKDSPTPGVLLRIDHTKSKVYNALRRLEWQTNREVDKAVNNLMASSNKGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMKGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEGXXXXXXXRQNMDRGASGNFESXXXXXXXXXGVFVTEAGVSERELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRKSLTNGNGSGTNGEMSDPQSPLARGQPTSQAQALVSGRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQAHAQP-RGRSMSSDSPERRGGPASGTAGGGAAERHVGGXGEAPAHKRQRSKSRSGRLVSQLRGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQQHTAGNXXXXXXXXXXXXXX-----GVVTAASRAAQLVEAREASRGHRRVSSATATMGVPIGNNTNLENRRSPPGSMSNLRAAXXXXXXXXX-ATGSRLPRVPPAMPLSGSRGAGVGRGASGRGSALKPPAPRNSE 632
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A6H5KD68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD68_9PHAE)

HSP 1 Score: 871 bits (2251), Expect = 5.330e-296
Identity = 576/695 (82.88%), Postives = 588/695 (84.60%), Query Frame = 1 
Query:    1 MGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMASSNKGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMK--------------------------------------------------------GVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEGGGEEGGRQNMDRGASGNFESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSDEGTTLASSPRQRKSLTNISGTNGEMSDPQSPLARGQPPGQQQASVSGRTAPASGGGLQGYQPATPSSDGRGREDPSQRSQQRQQHAQPPRGRSMSSDSPERPGGPASGTAGGGTAERYVGGVGEAPAHKRQRSKSRSGRLVSQLKGIVGAGKGKSARKGGSSGALVMNGRGGHSLSDDDEEDSFEDDEWDVREQXXXXXXXXXXXXXXXXXXXXXXXXX----GVVTAASRAAQLAEAREASRGHRRVSSATATMGAPIGNN-NLENRRSPPGSMSNL-RXXXXXXXXXXXXATGSRLPRVPPAMPLSGSRGAGVGKGASGRGSALKPPAPRNSE 1899
            MGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMASS+KGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMK                                                        GVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDY RSRRMSKEKY+AGV  GGE       RQNMDRG SGNFESDXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXX  MSDEGTTLASSPR+R SLTN SGTNGEMSDPQSPLARGQPPGQ QASVS RTAPASGGGLQGYQPA PSSDGRGRED SQ+SQQRQQHAQPPRGRSMS DSPER GGPASGT GGGTAER+VGG GEAPAH+RQRSKSRSGRLVSQLKGIVGAGKGKSAR+GGSSGAL+MNGRGGHSLSD    DSFED+EWDVR+QXXXXXXXXX    XXXXXXXXXXXX    GVVTAASRAAQLAEAREASR HRRVSSATATMGAP+GNN NLENRRSPPGSMSNL   XXXXXXXXXXXATGSRLPRVPPAMPLSGSRGAGVG+GASGRGSALKPPAPRNSE
Sbjct: 1205 MGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMASSHKGGVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMKTTRKGANVVQYVPKDMYFDSRGEKPLLAKAKEAIAREEAATAAGAGXXXVAGGLRKGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKYVAGVRAGGEXXXXXXXRQNMDRGVSGNFESDXXXXXXXXVFVTEAGVSERXXXXXXXXXXXXXXXXXXXXXXXXXGDMSDEGTTLASSPRRRSSLTNGSGTNGEMSDPQSPLARGQPPGQPQASVSARTAPASGGGLQGYQPAAPSSDGRGREDLSQKSQQRQQHAQPPRGRSMSRDSPERRGGPASGTEGGGTAERHVGGAGEAPAHQRQRSKSRSGRLVSQLKGIVGAGKGKSARRGGSSGALMMNGRGGHSLSDXXXXDSFEDEEWDVRQQXXXXXXXXXTAGNXXXXXXXXXXXXXXXXGVVTAASRAAQLAEAREASREHRRVSSATATMGAPMGNNTNLENRRSPPGSMSNLGAAXXXXXXXXXXXATGSRLPRVPPAMPLSGSRGAGVGRGASGRGSALKPPAPRNSE 1899
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: UPI000644BE56 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BE56)

HSP 1 Score: 75.1 bits (183), Expect = 1.350e-10
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  373 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSK 663
            +K  + TVW++ ++P K+  I+P  E+LS    +  RL   +SL   P +GFPVK  +P++ T+ A VTF N+    +D   F +PSD+ +++++ K
Sbjct:  356 HKNFEGTVWISQEFPRKITDILPIFEVLSPTHKLFGRLSDFISLK-FPSDGFPVKFDIPVLPTITATVTFNNYVEKEVDKCQFELPSDFVKTKQLLK 451
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A1R2APQ5_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2APQ5_9CILI)

HSP 1 Score: 70.9 bits (172), Expect = 4.020e-9
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:  355 KVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQE-GFPVKVSVPLMMTVKAVVTFENFRSDGIDASNF 621
            K+ +  NK +KA +W A D+P+K+  +MP L++L+     A R    LS   +    GFP+K  +PLM+TV A+V F+  +++GI+ S F
Sbjct:  369 KLEKNSNKHIKANLWCAEDFPIKIADLMPLLDLLASVSQKAKRFHEFLSSNQMFYNIGFPLKAKIPLMLTVTALVAFKELKTEGIEDSEF 458
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: F4Q3Y2_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q3Y2_CAVFA)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-8
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  373 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRM 657
            +K  +  VW+++++P K+  ++P  E+L+  + + +RL   +SL   P EGFPVK+  P++ T+ A VTF N+    ID  +F IP D+ + + +
Sbjct:  418 HKNFQGCVWISNEFPRKITDLLPIFEVLTPTNKLFSRLSEFISLK-FPMEGFPVKLDFPVVPTITATVTFNNYIEKEIDPQHFEIPVDFIKKKDL 511
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A1R2BVI1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BVI1_9CILI)

HSP 1 Score: 68.9 bits (167), Expect = 1.730e-8
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:  355 KVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQE-GFPVKVSVPLMMTVKAVVTFENFRSDGIDASNF 621
            K+ +  NK +KA +W A ++P+K+  +MP L++L+     A R    LS   +    GFP+K  +PLM+TV A++ F+  R +GI+ S F
Sbjct:  414 KLEKNTNKHIKANLWCAENFPIKITDLMPLLDLLASVSQKAKRFHEFLSSNQMFYNIGFPLKAKIPLMLTVTALIAFKELRIEGIEDSEF 503
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A1J1IKR7_9DIPT (CLUMA_CG013633, isoform A (Fragment) n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IKR7_9DIPT)

HSP 1 Score: 68.6 bits (166), Expect = 3.650e-8
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  337 PDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFR-SDGIDASNFVIPSDY 639
            P L  D V ++  K +KAT+ M+ D+PL +  ++  LEI++     A +LR  +SL  +P+ GFP+KV +PL+ TV A +TF++F   D I +  F IP+DY
Sbjct: 2353 PTLGRDLVFKKSQKTLKATIAMSQDFPLSIDILLNVLEIIAPFKHFA-KLRDFVSLK-LPK-GFPIKVDIPLVPTVSAKITFQDFEFRDDIQSDLFEIPADY 2451
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A2G9H5H1_9LAMI (Ankyrin repeat protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H5H1_9LAMI)

HSP 1 Score: 67.0 bits (162), Expect = 6.750e-8
Identity = 41/129 (31.78%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:  343 LNEDKVHRQI------NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFR----SDGIDASNFVIP----------SDYHRSRRMSKEK 669
            L++DK  R I       K ++ T+W++ D+PL++   +P L+IL  R     RLR  L+   +PQ  FPVKVS+P++ T++ +VTF  F     SD   ++++  P          S +HR++ +S ++
Sbjct:  427 LDKDKSERDIIQDKEFKKNLRPTLWLSSDFPLRIEEFLPLLDILENRVTAIRRLREYLT-TKLPQGTFPVKVSIPVVPTIRVIVTFTKFEELKPSDEDLSTSYSSPAAAGTQSSSSSWFHRTKSLSTQR 554
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BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: A0A1S2XWF0_CICAR (ankyrin repeat domain-containing protein 13C n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XWF0_CICAR)

HSP 1 Score: 67.0 bits (162), Expect = 7.300e-8
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  346 NEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENF 591
            NE K   +  K V+  +W+  D+PLK   ++P L+IL+ +     RLR +L+   +PQ  FPVKV++P++ T++ +VTF  F
Sbjct:  465 NESKSESEFKKGVRPVLWLTQDFPLKTDELLPVLDILANKVKAIRRLRELLT-TKLPQGTFPVKVAIPIVPTIRVIVTFTKF 545
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Match: D3AYY2_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AYY2_POLPP)

HSP 1 Score: 66.6 bits (161), Expect = 7.490e-8
Identity = 30/97 (30.93%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:  373 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENF-RSDGIDASNFVIPSDYHRSRRMS 660
            +K  + T+W++ ++P K+  ++P  E+L+  + + +RL   +SL   P +GFPVK+  P++ T+ A VTF+N+   + I    F +P D+ + +R++
Sbjct:  397 SKNFEGTIWISDEFPRKITDLLPIFEVLTPTNKLFSRLNEFVSLK-FPSDGFPVKLDFPVVPTITATVTFQNYVEREDIKPDLFEVPRDFVKKKRLT 492
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5671.16031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKT2_ECTSI4.650e-31488.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD68_9PHAE5.330e-29682.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644BE561.350e-1035.05hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1R2APQ5_9CILI4.020e-937.78Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
F4Q3Y2_CAVFA1.110e-833.68Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A1R2BVI1_9CILI1.730e-836.67Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1J1IKR7_9DIPT3.650e-840.20CLUMA_CG013633, isoform A (Fragment) n=1 Tax=Cluni... [more]
A0A2G9H5H1_9LAMI6.750e-831.78Ankyrin repeat protein n=1 Tax=Handroanthus impeti... [more]
A0A1S2XWF0_CICAR7.300e-837.80ankyrin repeat domain-containing protein 13C n=1 T... [more]
D3AYY2_POLPP7.490e-830.93Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5671contigEcto-sp13_S_contig5671:1070..8422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score891.7
Seed ortholog evalue2e-256
Seed eggNOG ortholog2880.D7FKT2
Model size1902
KEGG koko:K21437
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
Exons8
EggNOG free text desc.protein retention in ER lumen
EggNOG OGsKOG0522@1,KOG0522@2759
Ec32 ortholog descriptionAnkyrin repeat domain-containing protein 13
Ec32 orthologEc-17_001290.1
Cds size1902
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5671.16031.1prot_Ecto-sp13_S_contig5671.16031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5671 1070..8422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.0537584-CDS-Ecto-sp13_S_contig5671:1069..19331681463785.0537584-CDS-Ecto-sp13_S_contig5671:1069..1933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 1070..1933 -
1681463785.0666735-CDS-Ecto-sp13_S_contig5671:2276..24411681463785.0666735-CDS-Ecto-sp13_S_contig5671:2276..2441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 2277..2441 -
1681463785.077-CDS-Ecto-sp13_S_contig5671:3790..41261681463785.077-CDS-Ecto-sp13_S_contig5671:3790..4126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 3791..4126 -
1681463785.0870302-CDS-Ecto-sp13_S_contig5671:4705..47771681463785.0870302-CDS-Ecto-sp13_S_contig5671:4705..4777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 4706..4777 -
1681463785.0971177-CDS-Ecto-sp13_S_contig5671:5310..54181681463785.0971177-CDS-Ecto-sp13_S_contig5671:5310..5418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 5311..5418 -
1681463785.1081116-CDS-Ecto-sp13_S_contig5671:6389..64551681463785.1081116-CDS-Ecto-sp13_S_contig5671:6389..6455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 6390..6455 -
1681463785.1188474-CDS-Ecto-sp13_S_contig5671:7846..80771681463785.1188474-CDS-Ecto-sp13_S_contig5671:7846..8077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 7847..8077 -
1681463785.1295578-CDS-Ecto-sp13_S_contig5671:8362..84221681463785.1295578-CDS-Ecto-sp13_S_contig5671:8362..8422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5671 8363..8422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5671.16031.1

>prot_Ecto-sp13_S_contig5671.16031.1 ID=prot_Ecto-sp13_S_contig5671.16031.1|Name=mRNA_Ecto-sp13_S_contig5671.16031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=634bp
MGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMASSNKG
GVDSTQFKAKKTVFRESQKLDGGQQVQAVMAGWKCSTYQYLGSMQMKGVG
SSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALE
ILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSD
GIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEGGGEEGGRQNMDRGASG
NFESDDEEEEEGGVFVTEAGVSERELLRRRAASRNAFDDDEEDDSDFDDD
DMSDEGTTLASSPRQRKSLTNISGTNGEMSDPQSPLARGQPPGQQQASVS
GRTAPASGGGLQGYQPATPSSDGRGREDPSQRSQQRQQHAQPPRGRSMSS
DSPERPGGPASGTAGGGTAERYVGGVGEAPAHKRQRSKSRSGRLVSQLKG
IVGAGKGKSARKGGSSGALVMNGRGGHSLSDDDEEDSFEDDEWDVREQQQ
QQQQHTAGNGNAHGNGGGGSGSGGVVTAASRAAQLAEAREASRGHRRVSS
ATATMGAPIGNNNLENRRSPPGSMSNLRAAAEQQQQQQQQATGSRLPRVP
PAMPLSGSRGAGVGKGASGRGSALKPPAPRNSE*
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mRNA from alignment at Ecto-sp13_S_contig5671:1070..8422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5671.16031.1 ID=mRNA_Ecto-sp13_S_contig5671.16031.1|Name=mRNA_Ecto-sp13_S_contig5671.16031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5671:1070..8422- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGGACTCCCCGACGCCGGGCGTGCTGTTGAGGGTCGACCATAC
CAAGTCCAAGGTAGAAAACATATCGCTGTACAGACTAGGTCAACGACTAC
AGCATGCATGTCGAGGTCACGACTCCCCCTCACCCCCCCCTGTTGGAAGT
ACCTCGCCCCCTGTGTTTTTACCTACCCTCACCCGTGATGTCCACATCAA
ATCTTTGCTGCAACACCGACCGTGTGGCATGGCATCGCATACCCGGTCAC
CCCCCCGCATCCTCCTGACTATTCCACCTTTTTTTGGTCCCGATCGCCGT
CTTTTTTTGGGGGGTTTGCGCGGCGACGGCGGCGGTGACTTTCAGGTGTA
CAACGCTCTACGCCGTCTCGAGTGGCAGACCAACCGGGAGGTAGACAAGG
CCGTCAACAACCTCATGGCTTCGTCGAACAAGGGTGGTGTGGACAGCACG
CAGTTCAAGGCGAAGAAGACTGTGTTTCGAGAGTCGCAGAAGCTGGACGG
CGGGCAGCAGGTGCAGGCGGTCATGGCCGGCTGGAAGTGCTCCACGTACC
AGTACCTCGGGAGCATGCAGATGAAGGTGAGCTTTTCCTACTGTTTTTGT
CACTTGTGAGCATGAATTTTTTTTGTTGTGAAACAAAAAAAAAACGCAGA
TAAAGGCAAGTTTTCTTCCTTTTTATGTGTTCATGTGTGTGCTCTACGTA
CCAGTACCTCGGGAGCATACAGATGAAGGCAAGTTTTTTTTCTCTCGATT
CCTGTGTTGTTTGGTGGACTGGACCTGGTTCTGTCGTGTTGTAGTCGGGT
GGTCAGATGAGGCAGGCAAGCGTATCTTTCGAGCTAAGGTATCTGCCGGC
CTTGTTGCAATGTGCACCCCACGCGACTCAGGTATGGGGGCCCCCGCATG
TACGCTCTCCTTTTCTGCGGAGGGGTTGGGGTCCGGTAGCAGCAGAAGTG
GGACTTGAATTAGTCTCTCGGCTCTGAGGCTGACTCTTATGGCAACCGAA
AGTTGGCCCGACGGATTTTTTTGGACAGGCATACCCCTACCCCCCGGATT
TGCAGCGGATTCGACCAAGAGACAGACCTCTCACCACATCACCACAGAGT
TCTCCCTCCGTGATGGTCGAGTCGTCACCAGAACTTGCAGGCTGTACGCA
CCACACCTACAGGCGTCTTTGAAGCTAGTGGTGACTGCTGTAGGATCTGT
GTGTGCTGAGGAATGCCAGCCCATGTGAGCAAAAGTAAGAATCCGTATGA
AGAATCCGTCGAGGATTCTATACGATAGTTTGGCCAAACTATCGTATGGC
ATCCCCTACGGATTCTCAATACGGATTGTTACTATTGCTCTCATGGATTG
ATATTCCTCAGCACACACAGACCCCACAGCACTCACAACTAGCTTCAAAC
ACGCCTACAGGTGTGGTGCGCACAGCCTGCAAGTTCTGGTGACGACTCGA
CCATCATGGAGGGAGAGCTCTGAGGTGATGTGGTAAGAGGTCTACCTCTT
GGTCGAATCCGTGGCAAATCCGGGGGGTGGGGGTGCCTGTCCAAAAAAAT
CCGTCGAGCCAACTTTCGGTTGCCACAAGAGTCAGCCTGACCGCCTGCCT
CTTCAGCTTTACGCGCACTCACGGGGGCCATGAGCGCCTATACCCTTACG
CATGACGTCGATATATGACCATGTTGCACCACCGGTCGCCTACCCTCACA
CATTACATCAAATCATTGCAACTCTGGATCACAGCCCGTGTGGCACCGCA
CCGCATCCACGTCACCCTGCTCACGCACACACCCTCCCACACCGATCGTT
CAGACCACTCGGAAAGGGAGCAACGTGGTACAGTACGTGCCGAAGGACAT
GTACTTCGACTCTAGAGGAGAGAAGCCGCTGCTGGCCAAGGCAAAGGAGG
CCATAGCGAGGGAGGAGGCCGCCACCGCCGCTGGGGGGGGGGGGGCGTCG
CGGGGGGCCTGAGGAAGGGCGTCGGGTCCAGCATGTTCCAGAAGCCGTTC
TGGAAGAACAACCCGGATCTCAACGAAGACAAGGTGGGTCGTGATGATTA
ATTCGTTAGCCGGAGTATGGTTAGCCGGAGGTAGGGAGGGTTTTGCGAGG
GGGTTAGCCGAGCGTGTTGTTATGCTAACTGTTGGGGTGTTGGGGTCGAG
CGTACTCCTTTCGGTGTCTGTGTTTGTGTTGTGTCCTTGCGAGACCTGTA
GAAGACGTCCCCACTTGGAAATAGCCCGGGCGTTTCGAAGTTCACGCTCG
AATATCAGATATTTACCACCAGAACAGGCCCTCAGTATAAGAATACCACA
CCTCTGTCGTCGATGTTGGGACACCCAGTAAGTGCCTCCGCGGGGAAATT
ATAAGAGATGTCTAGGTGTTGGTGCTCGCGACAGGTAGAGTCTGTCTGTG
ATTGGGCGGTCAGTGGTGTTTGCGTTTGGTGCCGCCGTCATTACGAGTTA
GATCGAATCGAAGACATTTATGTGTTCCTAGGGGGGGGCGTCGAGCTTTC
CGCCGGGTGTGCTTTGCGTGTTGTCATGTGTTTCGATTTTTTTGCTTTGC
GCGCTGGTTTCATTGGAACGATATGGGTGTGTGGCCGGGTGAGATTTACG
GGAAAGGGACAAGTACAGGTGCCGAAAGATGTGGCTGTGTACATTGTGCT
TTTGGGTTCGTTGCAGGTGGGCCTTTGTTGTCATGTCAATCAAAAGATGC
TGTCGCTTATGCCCAGGCGTTTTCTCTTCTTGTCAATCAATCAATCAACC
AATGACATCTAAAGATGCTGTCGCTGTGGCCAGGCGTTTTCTCTTCTTGT
CAATCAATCAATCAAGATCGAGATGTCATTGTTGTTCCTTGGTGTTGCCG
CTCCTTCTGTGTCGTTCCTTCTGTAATTATCGTGGAGAAACGCGTGTTAT
GTTTGACAGGCCACATACAGCAGCCTTTCTTGGTCTGTTTCTCGGGGAAG
CGTGAACCTAACCCGCCCGTTGGTGTGTCCACTATAACTATGCTATCTCT
ACAGGTACACCGTCAGATCAACAAGCAGGTGAAGGCGACTGTGTGGATGG
CTCACGACTACCCCCTCAAGCTCAGGCACATCATGCCGGCTCTGGAGATC
CTTTCCGTCAGGGTGAGTTGCCCGTCAACGCTGCTGTTGCTGTTTCCACA
TCAGTTTCTCCCGTCCGTCAGGTTGAGTTAGCCCTCGCCGCTTGTGTGCT
GTTGCCTTCTCCACATTATCGGTTAGGGTGAAAGTTCGCTGTATCCACCG
CGATAGTGTGGCGTTGGTTTGTTTCATCCCGGGTTGATCCCAACTCGCGG
GAGACGAGCTTGAAACGCGCGTACACACCCAAGGTTGAGGAGACTGTTGA
CGGTCGTTTTCCTGTTCAAGGTCGCCTGCCGAGAATTGGAATCAACCCGC
ACGAACTAAGCGAACACCAAACACCTTCATCGTAGCCAATTCCACGCAAC
CGCTCTCTCCGAAGTACCATTGTCCCTCCGGACCCACACAAAGCCTGCCG
CTACTACTATGTAAACTTTCTAGAACCAATTGCCATCTACTCGTAGTTGG
AAAGCAATTTCAATCCCCCGCTGCATCTTACGCCCGTCGTTCTACGCTTA
CCCCGCGTACCGTGGCTCTTATCCGTTGCCTCCCGTGTTGTACAGGACGA
TATGGCCGCAAGGCTCCGCTCGGTTCTCTCCCTCGCCGGGATCCCTCAGG
AAGGATTCCCTGTCAAGGTGTGTTGTGTATGTTGGGTTGATCTATGATAT
ATACATATATCTGTACGGTAGTCGTCCGTCTCCGCCTTATGGATGCACGT
GATCTTAGTTCAAAACAATGTGTGCTTAAATTAGACGGGGGAACTGCCCT
TGGTTTTCTCATACTGCGGAGGCATCATGCGTCTGTCATGGTGTTGTCCT
TTAACCAGCATGTGTCGTTAGTTTGGTATGTGCTTTACACCGAGGACGGC
TGTTGTTCCGTCTCCGGCGATAAATAAGTCATGATGACACCGGTGAAAGG
AAGTTTTGCAAGGCGCCGTGGTCATCTATCTACCCCTTAATTAGGCTGCG
TCGTACGGGGCGGGGGGGATCACGGCAAAAAAAACAAAAAAGCGCCCGAA
TGTTGGCGATGTAGCCCATCACCGAAGAGAAGGAAATGATGTATAGTAGG
AAAGACGATGCTCATAACCCTTCTCCAAAAGGGATCGTGGTTAGTAGTGG
AATAAACATGGTAATGACTATTATGTATTGAGCAACTTTTACAAGTACCC
CCCCCCCCGTCCTACCGTCCTACCGTTGCGCGGCGCCCCAAAACAGGTTT
CCGTGCCCCTGATGATGACCGTGAAAGCGGTCGTCACCTTCGAGAACTTC
AGGTCCGACGGCATCGATGCCAGCAACTTCGTAATCCCGAGCGACTATCA
TCGGTCACGCCGCATGTCGAAGGAGAAGTATATCGCCGGGGTTGGGACCG
GAGGGGAAGGCGGCGGCGAGGAGGGCGGGCGGCAGAACATGGACAGGGGT
GCCTCGGGCAATTTCGAGTCGGACGACGAGGAGGAGGAGGAGGGAGGCGT
CTTTGTGACGGAGGCCGGTGTCAGCGAGAGGGAGCTGTTGAGGAGACGGG
CAGCATCTCGCAACGCGTTCGATGACGACGAGGTGTGTTGTTGTTGTTGT
TGTTGTTGATGTTGTTTTTGCTGTCTTGACGTGATGAATAGGGTTGGGTA
CTGGCAAAGCCAGTCAGGATCCTGTGTACTGGCTGCTGACGCAGCCAGTA
TACTGGATCCGATAAGTACACTGGTCCCGCGGCTGGTGAGGGGCCCCGCT
GGAGGCACCCCCGGAGGGCCCCACTGGAGGGGCCCCGCAGGAGGCGCTTT
TTTACGCGATTTGGCTTCACAATCAGTATTTTTTGGGTGGTTTTGGGCCA
TCTGATAGAGGCAGTATCGCGGGCAAAACGATAGAAACTTGGGGTACAAC
GTCCAAATTTGTTGGTTTTCGGCACGAGGAAATGTGGTACAAAGTTCGAA
CTTTGTCGTGCCCATAAACTCCAAGATCGTGGGAGACGTATGTGTGCATG
CACACGAGTTGAAATGGCTAGTAACATGATGAATTCATTGTGAATGACGT
TCAATGTTCCATAGTTCCACCAAACCCACCGGTTGGAGAAATAAAAAATG
CAAGCGACGAAGCAGAAAATCATAGAAAATCGGAAGCCTCTCGCAAAAGA
GAAAACAAGAAAAGAACGACACGGCAGCCCTGAACGTTACCAAGAAACTT
ACAAGAAACCACCAGCCAGAGTGGTGCTACCTGCTGTGCAAAGAGCAAAC
AGAATCAAGTAAAATAAATAGAAAAACAAAACAAAAGCATAAACGCCAGG
AAAAGGGGCCCAACAAACTAGCCAGCTCGTGCTGACGCAGCAGCCCTTGC
ATCATCCGCAACACTGCCGGGATCTGCAGCAGACGACGAGCTGCCAGAGC
AGACAAACCTATCCATCGTCGTGTGGTCTGCGTAGCTGTGTGGTTCGTGT
GGGGTGTACGGTCTGTCTCCTTCGGCAGGCGGCCTGATGTTTTCAGAAGA
GGTCTGCGGTGGAAATAGATGGGTTTCCGCTGGTTCTTGAGGCGTATTAA
GGGACGTACGTAAAGATCCGTATGTGCTGCGTACTGGCTACAATGGTTGG
CAGTGTATTTGTAATGCCAGTACACAAGCACTGGAAGTACTTACTGGTCC
AGTACCCAACCCTACCCCTTTGTCCTAATCCACCGTTGACAATACACGCT
GTGAAGTGGCCGTGCGTAAGGTGATGTTTTGCTTGAGTTGAGCGCCTCTC
ACCCCACCAAATACTTTGTTTGTTTTGTTTCGTTCATTTGTTTGTGTGTT
GCCCCTCAATCCCAACCAACCATAAGGTATTATCAAGCCCATGATGTAAC
ATGTGCTATTTAGTCGCCCACCCGCCAATGTCATCGTTCGTCGCAATGCT
TCCTTTCTTTTTTTTTTTTCTTGACCCTCAGGAGGACGATTCTGACTTCG
ATGACGACGACATGTCCGACGAGGGAACGACGCTGGCATCCTCACCCCGA
CAAAGAAAGAGCTTGACCAACATCAGCGGTACCAACGGCGAGATGTCCGA
CCCTCAGTCTCCGCTCGCCAGAGGGCAGCCACCGGGTCAACAGCAGGTGG
GTGTGTGAGAGACCAACTCAGAGGGCAGGCAGACAGAGAAAGACGGAGAG
AGAGAGAGAGACAGAGACAGAGACAAAGCCGGACGGACAGACAGAGGGAG
AGGGAGAGGGAGAGAGAGGGAGAGGTCAAAAAGCCGGGGGGCTCGTTTTT
TCTACTGGTTTAAGGTTTTGTACCTTGGTGGTTTTGCAAATCGTTTGTCC
CCCCCCTGCCGGCCAGATGTTACATCTTGAAGCGAGCACATATGACTCGG
TTAACCGAAATTAACAACAGCTTGCGCCTGAAGCTTTAACAAATGTTGCA
ACCCCCCCACCCCCCCCCCGCCGGTCCATCGGATTTCAGGCCTCGGTGTC
GGGGAGAACAGCACCAGCCTCCGGCGGCGGCCTTCAGGGTTATCAGCCGG
CCACCCCGTCCTCGGATGGGAGAGGTAGAGAGGACCCGTCGCAGAGATCA
CAGCAGCGGCAACAACACGCTCAACCTCCTCGCGGCCGATCCATGAGCAG
TGACAGCCCGGAGAGGCCAGGGGGCCCCGCGAGTGGGACCGCAGGGGGGG
GGACAGCAGAACGGTACGTCGGGGGGGTTGGGGAAGCTCCCGCCCACAAG
CGGCAGCGAAGCAAGTCTCGGAGCGGTAGGCTGGTGTCCCAGCTCAAGGG
CATCGTTGGGGCCGGGAAGGGCAAGTCCGCGCGGAAAGGCGGGAGCTCCG
GCGCGTTGGTGATGAACGGCAGGGGGGGGCACTCCCTCAGTGACGACGAC
GAGGAAGACTCGTTTGAGGACGACGAGTGGGACGTCCGAGAGCAGCAGCA
GCAGCAGCAGCAGCATACCGCGGGCAACGGCAACGCTCACGGCAACGGCG
GCGGTGGCAGTGGCAGCGGGGGGGTGGTCACAGCGGCGTCGCGGGCGGCC
CAGCTGGCAGAGGCGCGAGAGGCTTCCCGGGGACATCGGCGAGTGTCGTC
CGCTACGGCGACTATGGGAGCGCCGATCGGAAACAACAACTTGGAGAACC
GGAGATCGCCACCGGGGTCCATGTCTAATCTTAGAGCGGCGGCGGAGCAG
CAGCAGCAGCAGCAGCAGCAGGCGACGGGGTCGCGATTGCCGCGGGTCCC
GCCAGCGATGCCGCTAAGCGGCAGCAGGGGCGCGGGTGTCGGCAAGGGTG
CCAGCGGGAGAGGGTCCGCGCTGAAGCCGCCAGCGCCGCGGAATTCGGAG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5671:1070..8422-

>mRNA_Ecto-sp13_S_contig5671.16031.1 ID=mRNA_Ecto-sp13_S_contig5671.16031.1|Name=mRNA_Ecto-sp13_S_contig5671.16031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5671:1070..8422- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGGACTCCCCGACGCCGGGCGTGCTGTTGAGGGTCGACCATAC
CAAGTCCAAGGTGTACAACGCTCTACGCCGTCTCGAGTGGCAGACCAACC
GGGAGGTAGACAAGGCCGTCAACAACCTCATGGCTTCGTCGAACAAGGGT
GGTGTGGACAGCACGCAGTTCAAGGCGAAGAAGACTGTGTTTCGAGAGTC
GCAGAAGCTGGACGGCGGGCAGCAGGTGCAGGCGGTCATGGCCGGCTGGA
AGTGCTCCACGTACCAGTACCTCGGGAGCATGCAGATGAAGGGCGTCGGG
TCCAGCATGTTCCAGAAGCCGTTCTGGAAGAACAACCCGGATCTCAACGA
AGACAAGGTACACCGTCAGATCAACAAGCAGGTGAAGGCGACTGTGTGGA
TGGCTCACGACTACCCCCTCAAGCTCAGGCACATCATGCCGGCTCTGGAG
ATCCTTTCCGTCAGGGACGATATGGCCGCAAGGCTCCGCTCGGTTCTCTC
CCTCGCCGGGATCCCTCAGGAAGGATTCCCTGTCAAGGTTTCCGTGCCCC
TGATGATGACCGTGAAAGCGGTCGTCACCTTCGAGAACTTCAGGTCCGAC
GGCATCGATGCCAGCAACTTCGTAATCCCGAGCGACTATCATCGGTCACG
CCGCATGTCGAAGGAGAAGTATATCGCCGGGGTTGGGACCGGAGGGGAAG
GCGGCGGCGAGGAGGGCGGGCGGCAGAACATGGACAGGGGTGCCTCGGGC
AATTTCGAGTCGGACGACGAGGAGGAGGAGGAGGGAGGCGTCTTTGTGAC
GGAGGCCGGTGTCAGCGAGAGGGAGCTGTTGAGGAGACGGGCAGCATCTC
GCAACGCGTTCGATGACGACGAGGAGGACGATTCTGACTTCGATGACGAC
GACATGTCCGACGAGGGAACGACGCTGGCATCCTCACCCCGACAAAGAAA
GAGCTTGACCAACATCAGCGGTACCAACGGCGAGATGTCCGACCCTCAGT
CTCCGCTCGCCAGAGGGCAGCCACCGGGTCAACAGCAGGCCTCGGTGTCG
GGGAGAACAGCACCAGCCTCCGGCGGCGGCCTTCAGGGTTATCAGCCGGC
CACCCCGTCCTCGGATGGGAGAGGTAGAGAGGACCCGTCGCAGAGATCAC
AGCAGCGGCAACAACACGCTCAACCTCCTCGCGGCCGATCCATGAGCAGT
GACAGCCCGGAGAGGCCAGGGGGCCCCGCGAGTGGGACCGCAGGGGGGGG
GACAGCAGAACGGTACGTCGGGGGGGTTGGGGAAGCTCCCGCCCACAAGC
GGCAGCGAAGCAAGTCTCGGAGCGGTAGGCTGGTGTCCCAGCTCAAGGGC
ATCGTTGGGGCCGGGAAGGGCAAGTCCGCGCGGAAAGGCGGGAGCTCCGG
CGCGTTGGTGATGAACGGCAGGGGGGGGCACTCCCTCAGTGACGACGACG
AGGAAGACTCGTTTGAGGACGACGAGTGGGACGTCCGAGAGCAGCAGCAG
CAGCAGCAGCAGCATACCGCGGGCAACGGCAACGCTCACGGCAACGGCGG
CGGTGGCAGTGGCAGCGGGGGGGTGGTCACAGCGGCGTCGCGGGCGGCCC
AGCTGGCAGAGGCGCGAGAGGCTTCCCGGGGACATCGGCGAGTGTCGTCC
GCTACGGCGACTATGGGAGCGCCGATCGGAAACAACAACTTGGAGAACCG
GAGATCGCCACCGGGGTCCATGTCTAATCTTAGAGCGGCGGCGGAGCAGC
AGCAGCAGCAGCAGCAGCAGGCGACGGGGTCGCGATTGCCGCGGGTCCCG
CCAGCGATGCCGCTAAGCGGCAGCAGGGGCGCGGGTGTCGGCAAGGGTGC
CAGCGGGAGAGGGTCCGCGCTGAAGCCGCCAGCGCCGCGGAATTCGGAGT
GA
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