mRNA_Ecto-sp13_S_contig5629.15968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 274 bits (700), Expect = 8.660e-93 Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 1
Query: 1 MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFVNGSTSAADPGMLRGPASLVLPLATATAAFLGALAFGAAHQHQSARGGAV 438
MTVPSTCSNGLPGYQDGQACCLMNCG+CGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDF+N T+AADPGMLR PASLVLPLATATAAFLGALAFGAAHQHQ+ARGG V
Sbjct: 1 MTVPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFIN-DTNAADPGMLREPASLVLPLATATAAFLGALAFGAAHQHQAARGGGV 145
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JSV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV2_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.970e-33 Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1
Query: 244 MPTPVPFLAGNANDFVNGSTSAADPGMLRGPASLVLPLATATAAFLGALAFGAAHQHQSARGGAVRN 444
MPTPVPFLAGNANDFVN +TSAADPGMLRGP SLVLPLATATAAFLGALAFGAAHQHQ ARGGAVRN
Sbjct: 1 MPTPVPFLAGNANDFVNSTTSAADPGMLRGPGSLVLPLATATAAFLGALAFGAAHQHQPARGGAVRN 67
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 2.130e-19 Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 10 PSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFVNG 297
PSTCSNG+ GYQDG CCL CG CGGDGCG++ GT G+ +CCPSTI+ + VCG APCII TPAPA+ T P+ ++ + G
Sbjct: 372 PSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE---APCIIEGY---TPAPAVVGGGTTAPYGTSTCSNGILG 461
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.870e-16 Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 10 PSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTII 153
PSTCSNG+PGYQDG CCL CG CGGDGCG++ GT G+ +CCPS I+
Sbjct: 86 PSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDIL 133
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 3.240e-14 Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 7 VPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAP 231
V CSNG+PG Q G ACCL CG CGG GC + G GA +CC S I + +C + APCI+ + P P+P
Sbjct: 2880 VDDVCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPAPSP 2954
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.040e-13 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 16 TCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPT 252
TCSNG+PG Q G ACCL CG CGG GC + G G +CC S I + +C + APC++ + PAP+ MPT
Sbjct: 1768 TCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGS---APAPSPVAMPT 1843
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 9.520e-11 Identity = 32/69 (46.38%), Postives = 38/69 (55.07%), Query Frame = 1
Query: 19 CSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTP 225
CSNG+PG Q G +CCL CG CGG GC G G +CC I +C + APC + A P PTP
Sbjct: 448 CSNGIPGIQSGDSCCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAPP-PTP 515
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 3.990e-10 Identity = 31/61 (50.82%), Postives = 33/61 (54.10%), Query Frame = 1
Query: 19 CSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 201
CSNG G Q G ACCL CG CGG GCG G GA CC S I +C + APC I
Sbjct: 446 CSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYI 506
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 3.230e-8 Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1
Query: 13 STCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 201
+TCSNGL G + G CC + CG CGG GCGS G DCC STI +C APC+I
Sbjct: 22 TTCSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLT-KYDCCTSTIKEDNHLCSVTKEAPCVI 83
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 2.280e-7 Identity = 26/66 (39.39%), Postives = 34/66 (51.52%), Query Frame = 1
Query: 1 MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCI 198
+T TC NGL G +G CC + CG CGG GC + +DCC + I + +C APCI
Sbjct: 4 VTTAQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCI 69 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5629.15968.1 >prot_Ecto-sp13_S_contig5629.15968.1 ID=prot_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIback to top mRNA from alignment at Ecto-sp13_S_contig5629:4976..6203+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5629.15968.1 ID=mRNA_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5629:4976..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5629:4976..6203+ >mRNA_Ecto-sp13_S_contig5629.15968.1 ID=mRNA_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5629:4976..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |