mRNA_Ecto-sp13_S_contig10126.155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10126.155.1
Unique NamemRNA_Ecto-sp13_S_contig10126.155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10126.155.1 vs. uniprot
Match: A0A6H5JFE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE0_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 4.100e-162
Identity = 437/522 (83.72%), Postives = 439/522 (84.10%), Query Frame = 1 
Query:  190 CRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSTGXXXXXXXAVAGGPSRLLPPGGAGHLTGLGLGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------LVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPETSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGXXXXXXXXXXXXXXXXXXXIGGRAASSSHHRASSLGLHPSSASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVGATGVGSGVGGINVSTGGGIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 1674
            CRRERLF DDPN+NTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGS  XXXXXXX    GPSRLLPPGGAGHL GLGL     RSPPVSPSLHQRMGLGDDM LLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           LV PPVTAFLPPTPPVRGGYDSHGFGGL IAHPETSGFSGGSSFRVGAPGISS SGFVDAPVN RAPMA VG        XXXXXXXXXXX         HHRASSLGLHPSSASSS          XXXXXXXXXXXXXXXXXXXXX T GATGVG GVGGINVS GG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNL+HVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA
Sbjct:  159 CRRERLFADDPNTNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSXXXXXXXXXXXXXGPSRLLPPGGAGHLAGLGLXXXXGRSPPVSPSLHQRMGLGDDMVLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVNPPVTAFLPPTPPVRGGYDSHGFGGLTIAHPETSGFSGGSSFRVGAPGISSASGFVDAPVNVRAPMATVGGGVGGKGSXXXXXXXXXXXXXXXXXXXXHHRASSLGLHPSSASSSSPGLTPSSWSXXXXXXXXXXXXXXXXXXXXXXTAGATGVGGGVGGINVSAGG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLAHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 678
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10126.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFE0_9PHAE4.100e-16283.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10126contigEcto-sp13_S_contig10126:1508..4251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1676
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-18_000940.1
Cds size1668
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.517277-UTR-Ecto-sp13_S_contig10126:1507..15131681462509.517277-UTR-Ecto-sp13_S_contig10126:1507..1513Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10126 1508..1513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.5277486-CDS-Ecto-sp13_S_contig10126:1513..15941681462509.5277486-CDS-Ecto-sp13_S_contig10126:1513..1594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10126 1514..1594 +
1681462509.5374784-CDS-Ecto-sp13_S_contig10126:2664..42511681462509.5374784-CDS-Ecto-sp13_S_contig10126:2664..4251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10126 2665..4251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10126.155.1prot_Ecto-sp13_S_contig10126.155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10126 1514..4251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10126.155.1

>prot_Ecto-sp13_S_contig10126.155.1 ID=prot_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=556bp
MYCSGHREGDMVDVVYKRCEYPGGCEKHPHFGAEGERARFCGRHKTDDMV
NVKHRRCQQPGCRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLD
LPPGLVPLPSIGGRSRSGSTGSGGVGAGAVAGGPSRLLPPGGAGHLTGLG
LGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGGGGG
GSEASDQRLQQAKQQQQQQQQQQQQMHQLQQRRLYEAQQQQQQQQQHRQA
GGGSGGGSSGGGGGAGLVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPE
TSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGVGVGGKGSAAGA
GAGGGGGIGGRAASSSHHRASSLGLHPSSASSSSPGLTPSSWSSWPSSSS
SGGREAIPSSSSSSGTVGATGVGSGVGGINVSTGGGIASSSRAGSVAAAD
GDGGVAAAAAAAAVAAAAAAGGIGDGTNLEMKPPPTEPSVHGPLHQYSGR
SGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSA
AANVLA
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mRNA from alignment at Ecto-sp13_S_contig10126:1508..4251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10126.155.1 ID=mRNA_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10126:1508..4251+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAATGTACTGCTCAGGCCATCGGGAGGGTGACATGGTGGACGTGGT
GTACAAGCGATGCGAGTATCCCGGAGGCTGCGAAAAGGTGAGACAGACAG
CGGCAGAGAGGGAGAGAGAGAAACAGACAGACAGCGGCAGAGAGGGAGAG
AGAGAAACAGACAAACAGCGGCAGAGAGGGAGAGAAGAAACAGACAGACA
GACAGACAGACGGAGACCCGGTACCCTGTCTCTGCCCCGTTGGTCAAGAA
TTACAAGAGTTACAAGAGTTAAGACGGTTTCGGTGGTATGTTGCACGACA
GCGGGCAGGCGTGACCATGTTTGTCCGTTGTAGGGTATTTCGTTATTTTT
CCTGGCGTATCTTCGCTTCTCTATCCTTGTCTATCTCTACTCTTCGGGGA
CGCTGAGCGTCGTTGACCGTGGCACCGCATGTTGAGTGGGCAGCAGCACA
CAGGGCAGGCGGCCGCCAAGGACGGGCACATGTTTCCCTCGGCCGTTGCC
GCCGCTGCTGATTGGGAGTCGAAGCGAAAATCTGGCGCGTGGAATATCGT
AGCACCACCGCCGTCGCACCAGTAGCGTCGGCGATCAAACACACCTGGTG
CTATGACGTAACCTTTTGTCGCCCTCATTGAACCTTGTTGGCAATGGGGC
GGTCCGTTATTATTCCTGTTATGATGCAGCGTCACTCCGACACTAAGTGT
ACTTCATCGGGAACAGCATGCATCGAATCCCGAAAGTCTTGTCGTGTTTC
TACCGAGGTGTACTTTTCCAGTCACAACTGATGTACCGGTGTGAAACACG
CGCGGAGAATGCCATCGCGAGTGGTCTGGTTATTTCTCTGCAGTTGGCAC
CACCCTAAACCTTGTAGAGACCACGCCAATCGACCTTTTCGTCTATGCCG
ACCCCCCCTCCCTCCCTCCCTCCCTCTCTTCGACCCAACCCTGCCCGCGT
GCTTGTCTTCGGAGACTGCTCGACTAACGATTCCCCTCCTTGGTCTTTCC
TCTCTCCGTTACCGTTGCACTCTTAAAACTTTCGCTGCTGGTACGCCAAC
CCCACCCACCAATCGATTAATCGACGGATGAATCCTGTTGGAAAAAAAAA
AAAACGCCGGTGTCGGCAACGAACAAATCGATCGTGATTGATTTTCCCGC
CGCGCAGCATCCGCACTTCGGCGCCGAAGGCGAGAGGGCGCGTTTCTGCG
GCCGGCACAAGACGGACGACATGGTCAACGTCAAGCACCGCCGCTGCCAG
CAGCCGGGGTGCCGGCGGGAGCGCCTCTTCACCGACGACCCCAACTCGAA
CACGAAGCCTCTCTATTGCTCGCTGCACCTCGCTTACCAGGAGCGTGGCA
TCGACCCCCGCTCCTGCGACTTAGACCTGCCCCCCGGCCTCGTACCTCTG
CCCTCGATAGGCGGGCGCAGTAGGTCGGGGAGCACGGGTAGTGGGGGCGT
CGGGGCGGGCGCGGTGGCGGGGGGACCCTCCCGCCTGCTGCCGCCTGGCG
GTGCGGGACACTTGACGGGGCTTGGCCTCGGAGGGGGGGGGGTGCGTAGC
CCTCCGGTTTCTCCGTCGCTGCACCAGCGGATGGGCCTGGGCGATGACAT
GGGGTTGTTGAGCACGGCTGGCAAGAAGCGGGGGCGCTTGGGGTTTGGCG
AGGATGATGTTGGCGGCGGGGGTGGAGGGTCGGAGGCTTCTGACCAGCGC
TTGCAGCAAGCAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
GATGCACCAGCTACAGCAACGCCGGCTGTACGAAGCGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACCGTCAGGCCGGGGGCGGGAGCGGGGGCGGCAGC
AGCGGCGGCGGCGGCGGTGCAGGACTGGTCACCCCACCCGTGACGGCGTT
TCTTCCACCAACGCCGCCGGTCCGAGGGGGTTACGATTCCCACGGGTTCG
GGGGGCTGGCCATTGCACACCCTGAGACGAGCGGGTTTTCCGGAGGGTCT
AGCTTTCGAGTTGGGGCTCCGGGCATTTCCAGTACGTCAGGATTCGTGGA
CGCGCCCGTGAACGCTCGGGCGCCGATGGCGAGGGTGGGTGTGGGCGTGG
GCGGCAAGGGTTCGGCGGCGGGGGCGGGGGCTGGCGGGGGCGGAGGCATT
GGCGGTAGGGCGGCTTCGTCGTCTCATCACCGCGCGTCGTCGCTAGGGTT
ACACCCGTCGTCGGCCTCGTCTTCGTCGCCCGGGTTAACCCCCTCGTCTT
GGTCATCATGGCCGTCCTCTTCGTCGAGCGGCGGCCGCGAGGCGATACCC
TCCTCGTCCTCCTCGAGCGGGACGGTGGGGGCCACCGGCGTCGGCAGTGG
CGTCGGCGGCATCAACGTCTCGACCGGGGGAGGCATCGCGAGCTCCTCTC
GCGCGGGCTCCGTCGCCGCCGCCGACGGTGATGGCGGGGTGGCCGCCGCC
GCCGCAGCAGCAGCAGTAGCAGCAGCCGCTGCCGCCGGTGGCATTGGCGA
CGGAACCAACCTCGAGATGAAGCCTCCACCGACGGAGCCGTCGGTGCACG
GCCCCCTGCACCAGTACAGCGGCCGGAGCGGGCACGGCCCGGCCTCGAAC
CTCTCGCACGTGCGGCTACCGGGGCTCCCGGGCCTGGCCTGGTCGTCGCC
GTCGCCTCTGTCGCCGCCGGTGCTGCCCCACCCTCCCCTGCTCCCCGGCA
TCTCAAACTTCAGACGCCTGTCGGCGGCGGCGAACGTGCTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10126:1508..4251+

>mRNA_Ecto-sp13_S_contig10126.155.1 ID=mRNA_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10126:1508..4251+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTGCTCAGGCCATCGGGAGGGTGACATGGTGGACGTGGTGTACAA
GCGATGCGAGTATCCCGGAGGCTGCGAAAAGCATCCGCACTTCGGCGCCG
AAGGCGAGAGGGCGCGTTTCTGCGGCCGGCACAAGACGGACGACATGGTC
AACGTCAAGCACCGCCGCTGCCAGCAGCCGGGGTGCCGGCGGGAGCGCCT
CTTCACCGACGACCCCAACTCGAACACGAAGCCTCTCTATTGCTCGCTGC
ACCTCGCTTACCAGGAGCGTGGCATCGACCCCCGCTCCTGCGACTTAGAC
CTGCCCCCCGGCCTCGTACCTCTGCCCTCGATAGGCGGGCGCAGTAGGTC
GGGGAGCACGGGTAGTGGGGGCGTCGGGGCGGGCGCGGTGGCGGGGGGAC
CCTCCCGCCTGCTGCCGCCTGGCGGTGCGGGACACTTGACGGGGCTTGGC
CTCGGAGGGGGGGGGGTGCGTAGCCCTCCGGTTTCTCCGTCGCTGCACCA
GCGGATGGGCCTGGGCGATGACATGGGGTTGTTGAGCACGGCTGGCAAGA
AGCGGGGGCGCTTGGGGTTTGGCGAGGATGATGTTGGCGGCGGGGGTGGA
GGGTCGGAGGCTTCTGACCAGCGCTTGCAGCAAGCAAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAGCAACAGATGCACCAGCTACAGCAACGCCGGC
TGTACGAAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGTCAGGCC
GGGGGCGGGAGCGGGGGCGGCAGCAGCGGCGGCGGCGGCGGTGCAGGACT
GGTCACCCCACCCGTGACGGCGTTTCTTCCACCAACGCCGCCGGTCCGAG
GGGGTTACGATTCCCACGGGTTCGGGGGGCTGGCCATTGCACACCCTGAG
ACGAGCGGGTTTTCCGGAGGGTCTAGCTTTCGAGTTGGGGCTCCGGGCAT
TTCCAGTACGTCAGGATTCGTGGACGCGCCCGTGAACGCTCGGGCGCCGA
TGGCGAGGGTGGGTGTGGGCGTGGGCGGCAAGGGTTCGGCGGCGGGGGCG
GGGGCTGGCGGGGGCGGAGGCATTGGCGGTAGGGCGGCTTCGTCGTCTCA
TCACCGCGCGTCGTCGCTAGGGTTACACCCGTCGTCGGCCTCGTCTTCGT
CGCCCGGGTTAACCCCCTCGTCTTGGTCATCATGGCCGTCCTCTTCGTCG
AGCGGCGGCCGCGAGGCGATACCCTCCTCGTCCTCCTCGAGCGGGACGGT
GGGGGCCACCGGCGTCGGCAGTGGCGTCGGCGGCATCAACGTCTCGACCG
GGGGAGGCATCGCGAGCTCCTCTCGCGCGGGCTCCGTCGCCGCCGCCGAC
GGTGATGGCGGGGTGGCCGCCGCCGCCGCAGCAGCAGCAGTAGCAGCAGC
CGCTGCCGCCGGTGGCATTGGCGACGGAACCAACCTCGAGATGAAGCCTC
CACCGACGGAGCCGTCGGTGCACGGCCCCCTGCACCAGTACAGCGGCCGG
AGCGGGCACGGCCCGGCCTCGAACCTCTCGCACGTGCGGCTACCGGGGCT
CCCGGGCCTGGCCTGGTCGTCGCCGTCGCCTCTGTCGCCGCCGGTGCTGC
CCCACCCTCCCCTGCTCCCCGGCATCTCAAACTTCAGACGCCTGTCGGCG
GCGGCGAACGTGCTCGCG
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