prot_Ecto-sp13_S_contig11709.1476.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11709.1476.1
Unique Nameprot_Ecto-sp13_S_contig11709.1476.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length658
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 801 bits (2069), Expect = 7.900e-279
Identity = 574/662 (86.71%), Postives = 580/662 (87.61%), Query Frame = 0 
Query:    1 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGGGARGTXXXXXXXXXXXXXXXXXXXXXXXXYSGDDNAVEXXXXXXXXXXXXXXXXXXXTASGGRSSPARGNLLDLEENTPLETSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGLGGAGFDSSSGAGQGSATASNYASASDTGAVYGSNQFGSINFG-----------SGGGGGDFSSGFAPRDPFAAAFGGSAPSVAAPDVPPGAPDEPAPRPLPAFFPGGLPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSPSTDFGSWMSSRGGPXXXXXXXXXSRSSAGFANGLLGVPGRHKLYSLHESPSLASSNGGGVGNGGSVMAPGSSXXXXXXXXXXXXXXAFNPFEMTSGVAAPAARAETTDPLSAGANGTGGGVLAVGAAGGFLPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSQXXXXXXXXXXQTLQQPFPSPAGQAALPPQQQQLRXXXXXXXXXXXXXX-QPQPQGQPXXXXXXXXXXXXXXXXXXXQQQAADPFTGGMGPVAGDPFAQAEAPAGQAPRVNNQLRGAAGSGSFDSGTSRTLAGNSADSSAGFGQALITTGTGGESKYNPFDDP 650
            LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGG    RGTXXXXXXXXXXXXXXXXXXXXXX  YS       XXXXXXXXXXXXXXXXXXX    GRSSPARGNLLDLEENTPL+TSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSG+GG GFDS SGAGQGSATASNYASASDTGAVYGSNQF                 SGGGGGDFSSGFAPRDPFAAAFGGSAPS AAPDVPPGAPDEPAPRPLPAFFPGG+PGNQSSSIVSVTSSSATNRNQGVLGVAQQRQS STDFGSWMSSRGGPXXXXXXXXX   SAGFANGLLG PGRHKLYSLHESPSLASSNGGGVGN GSVMAP   XXXXXXXXXXXXXX  NPFEMTSGVAAPAARAET+DPLSAGANGTGGGVLAVGAAGG +PPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSS XXXXXXXXXX TLQQPFPSPAGQAALP       XXXXXXXXXXXXXX QPQPQGQP         XXXXXXXXXX   AADPF GGMG VA DPFAQA+APAGQAPRVNNQL GAAGSGSFD GTSRTLAG   DSSA FGQAL  TGTGGESKYNPFDDP
Sbjct:  290 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGXXXTRGTXXXXXXXXXXXXXXXXXXXXXXTAYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSSPARGNLLDLEENTPLDTSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGVGGVGFDSLSGAGQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXSGGGGGDFSSGFAPRDPFAAAFGGSAPSAAAPDVPPGAPDEPAPRPLPAFFPGGIPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSLSTDFGSWMSSRGGPXXXXXXXXXXXXSAGFANGLLGGPGRHKLYSLHESPSLASSNGGGVGNYGSVMAPSXXXXXXXXXXXXXXXXXXNPFEMTSGVAAPAARAETSDPLSAGANGTGGGVLAVGAAGGLIPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSXXXXXXXXXXXXTLQQPFPSPAGQAALPXXXXXXXXXXXXXXXXXXXXXXQPQPQGQPLQGQAQQGSXXXXXXXXXXXXXAADPFAGGMGLVARDPFAQAQAPAGQAPRVNNQLGGAAGSGSFDPGTSRTLAGG--DSSAAFGQALFATGTGGESKYNPFDDP 949
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BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.090e-34
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 0 
Query:    1 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGGG--ARGT 80
            LLGNEVAPDVVDQTRDLVQQVIKKVEDLG SGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGG    ARGT
Sbjct:  285 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGXXXXARGT 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQS7_9PHAE7.900e-27986.71VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEH3_ECTSI1.090e-3493.90VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46007FAMILY NOT NAMEDcoord: 119..603

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11709contigEcto-sp13_S_contig11709:4..2999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11709.1476.1mRNA_Ecto-sp13_S_contig11709.1476.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11709 4..3000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11709.1476.1 ID=prot_Ecto-sp13_S_contig11709.1476.1|Name=mRNA_Ecto-sp13_S_contig11709.1476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=658bp
LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQ
TVLRVYEGVVDGSETLPLSRRGGGGGARGTGEATAAAEAVFAATAAAAKS
NGTAYSGDDNAVENGGAAKNGAAGEGTVAAAATASGGRSSPARGNLLDLE
ENTPLETSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGLGGAGFDSSSG
AGQGSATASNYASASDTGAVYGSNQFGSINFGSGGGGGDFSSGFAPRDPF
AAAFGGSAPSVAAPDVPPGAPDEPAPRPLPAFFPGGLPGNQSSSIVSVTS
SSATNRNQGVLGVAQQRQSPSTDFGSWMSSRGGPGGPGDPFAPSRSSAGF
ANGLLGVPGRHKLYSLHESPSLASSNGGGVGNGGSVMAPGSSLSSSVGGG
AGGGGGAFNPFEMTSGVAAPAARAETTDPLSAGANGTGGGVLAVGAAGGF
LPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSQGPQQPQHQQQQ
TLQQPFPSPAGQAALPPQQQQLRQQPQQQQQQGSMWWQPQPQGQPIQGQA
QQGSQQQPQQQLQQQQQAADPFTGGMGPVAGDPFAQAEAPAGQAPRVNNQ
LRGAAGSGSFDSGTSRTLAGNSADSSAGFGQALITTGTGGESKYNPFDDP
PAATMFGG
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