mRNA_Ecto-sp13_S_contig11709.1476.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11709.1476.1
Unique NamemRNA_Ecto-sp13_S_contig11709.1476.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 801 bits (2069), Expect = 7.900e-279
Identity = 574/662 (86.71%), Postives = 580/662 (87.61%), Query Frame = 1 
Query:    1 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGGGARGTXXXXXXXXXXXXXXXXXXXXXXXXYSGDDNAVEXXXXXXXXXXXXXXXXXXXTASGGRSSPARGNLLDLEENTPLETSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGLGGAGFDSSSGAGQGSATASNYASASDTGAVYGSNQFGSINFG-----------SGGGGGDFSSGFAPRDPFAAAFGGSAPSVAAPDVPPGAPDEPAPRPLPAFFPGGLPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSPSTDFGSWMSSRGGPXXXXXXXXXSRSSAGFANGLLGVPGRHKLYSLHESPSLASSNGGGVGNGGSVMAPGSSXXXXXXXXXXXXXXAFNPFEMTSGVAAPAARAETTDPLSAGANGTGGGVLAVGAAGGFLPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSQXXXXXXXXXXQTLQQPFPSPAGQAALPPQQQQLRXXXXXXXXXXXXXX-QPQPQGQPXXXXXXXXXXXXXXXXXXXQQQAADPFTGGMGPVAGDPFAQAEAPAGQAPRVNNQLRGAAGSGSFDSGTSRTLAGNSADSSAGFGQALITTGTGGESKYNPFDDP 1950
            LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGG    RGTXXXXXXXXXXXXXXXXXXXXXX  YS       XXXXXXXXXXXXXXXXXXX    GRSSPARGNLLDLEENTPL+TSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSG+GG GFDS SGAGQGSATASNYASASDTGAVYGSNQF                 SGGGGGDFSSGFAPRDPFAAAFGGSAPS AAPDVPPGAPDEPAPRPLPAFFPGG+PGNQSSSIVSVTSSSATNRNQGVLGVAQQRQS STDFGSWMSSRGGPXXXXXXXXX   SAGFANGLLG PGRHKLYSLHESPSLASSNGGGVGN GSVMAP   XXXXXXXXXXXXXX  NPFEMTSGVAAPAARAET+DPLSAGANGTGGGVLAVGAAGG +PPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSS XXXXXXXXXX TLQQPFPSPAGQAALP       XXXXXXXXXXXXXX QPQPQGQP         XXXXXXXXXX   AADPF GGMG VA DPFAQA+APAGQAPRVNNQL GAAGSGSFD GTSRTLAG   DSSA FGQAL  TGTGGESKYNPFDDP
Sbjct:  290 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGXXXTRGTXXXXXXXXXXXXXXXXXXXXXXTAYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSSPARGNLLDLEENTPLDTSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGVGGVGFDSLSGAGQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXSGGGGGDFSSGFAPRDPFAAAFGGSAPSAAAPDVPPGAPDEPAPRPLPAFFPGGIPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSLSTDFGSWMSSRGGPXXXXXXXXXXXXSAGFANGLLGGPGRHKLYSLHESPSLASSNGGGVGNYGSVMAPSXXXXXXXXXXXXXXXXXXNPFEMTSGVAAPAARAETSDPLSAGANGTGGGVLAVGAAGGLIPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSXXXXXXXXXXXXTLQQPFPSPAGQAALPXXXXXXXXXXXXXXXXXXXXXXQPQPQGQPLQGQAQQGSXXXXXXXXXXXXXAADPFAGGMGLVARDPFAQAQAPAGQAPRVNNQLGGAAGSGSFDPGTSRTLAGG--DSSAAFGQALFATGTGGESKYNPFDDP 949
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BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.090e-34
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    1 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGGG--ARGT 240
            LLGNEVAPDVVDQTRDLVQQVIKKVEDLG SGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGG    ARGT
Sbjct:  285 LLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGXXXXARGT 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11709.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQS7_9PHAE7.900e-27986.71VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEH3_ECTSI1.090e-3493.90VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11709contigEcto-sp13_S_contig11709:4..3000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1977
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-21_004690.2
Cds size1974
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.5278084-CDS-Ecto-sp13_S_contig11709:3..751681462616.5278084-CDS-Ecto-sp13_S_contig11709:3..75Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11709 4..75 +
1681462616.5373764-CDS-Ecto-sp13_S_contig11709:573..12341681462616.5373764-CDS-Ecto-sp13_S_contig11709:573..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11709 574..1234 +
1681462616.5471742-CDS-Ecto-sp13_S_contig11709:1758..29991681462616.5471742-CDS-Ecto-sp13_S_contig11709:1758..2999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11709 1759..2999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11709.1476.1prot_Ecto-sp13_S_contig11709.1476.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11709 4..2999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11709.1476.1

>prot_Ecto-sp13_S_contig11709.1476.1 ID=prot_Ecto-sp13_S_contig11709.1476.1|Name=mRNA_Ecto-sp13_S_contig11709.1476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=658bp
LLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQ
TVLRVYEGVVDGSETLPLSRRGGGGGARGTGEATAAAEAVFAATAAAAKS
NGTAYSGDDNAVENGGAAKNGAAGEGTVAAAATASGGRSSPARGNLLDLE
ENTPLETSMTGEGAGGMMVAYTDGQFMASTSNSVGGVSGLGGAGFDSSSG
AGQGSATASNYASASDTGAVYGSNQFGSINFGSGGGGGDFSSGFAPRDPF
AAAFGGSAPSVAAPDVPPGAPDEPAPRPLPAFFPGGLPGNQSSSIVSVTS
SSATNRNQGVLGVAQQRQSPSTDFGSWMSSRGGPGGPGDPFAPSRSSAGF
ANGLLGVPGRHKLYSLHESPSLASSNGGGVGNGGSVMAPGSSLSSSVGGG
AGGGGGAFNPFEMTSGVAAPAARAETTDPLSAGANGTGGGVLAVGAAGGF
LPPQQQQLGMLPSSTTFASGSSGTNRNRSFSEYSATSSQGPQQPQHQQQQ
TLQQPFPSPAGQAALPPQQQQLRQQPQQQQQQGSMWWQPQPQGQPIQGQA
QQGSQQQPQQQLQQQQQAADPFTGGMGPVAGDPFAQAEAPAGQAPRVNNQ
LRGAAGSGSFDSGTSRTLAGNSADSSAGFGQALITTGTGGESKYNPFDDP
PAATMFGG
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mRNA from alignment at Ecto-sp13_S_contig11709:4..3000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11709.1476.1 ID=mRNA_Ecto-sp13_S_contig11709.1476.1|Name=mRNA_Ecto-sp13_S_contig11709.1476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11709:4..3000+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTGGCAACGAGGTGGCCCCGGACGTGGTTGATCAAACAAGAGATTT
GGTCCAGCAGGTCATCAAGAAGGTACGCACACAGGGCCTGGTAGTTTGCA
AGTTCGCCGATGATCTTTATACAAACATTCACGTGGTTGAGTATTGTTGG
TCGAAACTGCAGGTGTGTAGCGAGGAGAGGAACCTACCGTACGCACCCTC
CCAGGGCCGCAGACCATGGTGTTTTGTGTTTTTCTCCTACACGTCAATAT
TTAATTTCTAACTTCTGGCACACGCTTAGGTGACGAGGTCAGAAACAGTG
CCATGGAGCTTGTTTCTTGGCGTCGTTGCTCCGCGTCAGATTTGACGTTC
CCACCTATACGTTGATGTCCCTCCCGGGGCAGACGATATCATATAGATAG
GACCCTCTTCCCAACGGGGTGGGTTGAAACGGCAGTACAGCCCTCTAGCT
TCCCCCCCTGCGCCCGCCCCCCCCCTCCTGGTAAATCTCTGCGGTCAATA
CATGCCTACGAGTAGACTCAGCCCCACCCCGATCCCCCCCCCTCGGAATG
TTCCGGCCCGGCGCGCGAAGGTTGAGGATTTGGGCCAAAGCGGCAACCCG
GATGAGAAGGACCTGGACCGCTACTTAAAGGCGCACGACGACTTGCAGAC
GGTGCTACGCGTCTACGAAGGCGTTGTTGACGGCAGCGAGACCTTGCCCC
TCTCCCGCAGGGGCGGCGGCGGTGGCGCTAGAGGAACCGGCGAGGCGACG
GCTGCCGCGGAGGCCGTGTTTGCCGCCACCGCCGCCGCCGCCAAGAGCAA
TGGCACCGCCTACAGCGGCGACGACAATGCGGTCGAGAACGGCGGGGCCG
CAAAGAATGGTGCGGCGGGTGAGGGGACGGTGGCGGCCGCTGCTACCGCC
AGCGGAGGCAGGAGCAGTCCCGCACGGGGAAACCTGTTGGACCTCGAGGA
GAACACCCCGTTAGAGACATCTATGACCGGAGAAGGCGCCGGGGGGATGA
TGGTCGCGTACACCGATGGGCAGTTCATGGCCAGTACCTCGAACAGCGTC
GGGGGCGTGAGCGGTCTTGGTGGCGCGGGCTTCGATAGCTCGTCCGGCGC
TGGACAAGGGAGCGCGACCGCCAGCAACTACGCGAGCGCCAGCGACACCG
GAGCGGTGTACGGCAGCAACCAGTTCGGGAGCATCAACTTCGGCAGCGGC
GGGGGTGGCGGAGACTTCTCGTCTGGCTTCGGTGAGCGAGAGATTCTAAC
GGTGATTTGAGGCGTAACCGGAGGATGGGATTTGACGTGCGGTTGTACCG
AGGTTTACGAAAGAAAAAGTGGTCTTGGGCTGGCAACTGGGCGTGCTGGC
GTAGAGTTGAGAGTGGGAGAGTATCGGCGAAGAGAGAGCTTAACATTTGA
GTTGCATTCTTGAGCATTCTCTCGTTCTCTCGTCCCAAAATGTGGTCATG
CTACGGCAGTTGGCACGCGAGGGTAAGCGCTCTTACGCCGTGTTGAATGT
CCGTTCGAAGGAGTAGACATGTATCCGTCCGTGTGGAGGTAAACTCAAAA
TCAGGACAAGCGTGTGACCATCGGTTATTTGCTTTGCAACAAACGTGGCG
TCTCACCTCAACGGCACTAGGACGGTCGCTCCCTTACTAAACGGTAGGTG
TTTGCTATCGTGGTCGCTGTCGCTGCGCTACCTCCCCTTTCCAACACGAT
TCCCACCCCCCAAATCTTGTGCACGTATATTCCCGTCCGCCAATTGTTCT
CGTAGCCCCGAGGGACCCATTCGCGGCGGCGTTCGGGGGCAGCGCGCCCA
GCGTAGCGGCGCCGGATGTGCCTCCGGGCGCGCCAGATGAGCCCGCCCCG
CGCCCACTGCCGGCATTTTTCCCCGGAGGCCTTCCCGGGAACCAGTCGTC
GTCGATCGTCTCGGTGACGTCATCAAGCGCCACGAACCGGAACCAAGGCG
TGCTGGGGGTCGCTCAGCAGCGGCAGTCCCCGTCCACGGACTTCGGGTCT
TGGATGTCGTCCAGGGGCGGGCCGGGCGGGCCGGGGGACCCTTTCGCACC
GTCCCGTTCCTCCGCGGGGTTCGCGAACGGCCTCCTGGGGGTTCCCGGGC
GCCACAAGCTGTACTCTCTCCACGAGTCGCCGTCTCTTGCTTCAAGCAAC
GGTGGCGGCGTCGGCAACGGTGGTAGCGTGATGGCGCCCGGCTCGTCACT
CTCTAGCAGCGTCGGCGGCGGCGCGGGGGGGGGAGGCGGGGCCTTCAACC
CTTTCGAGATGACCTCAGGGGTTGCTGCGCCCGCTGCGAGGGCCGAAACG
ACGGATCCGCTCTCGGCTGGAGCTAACGGCACCGGAGGCGGGGTTCTCGC
TGTCGGGGCAGCAGGAGGGTTTCTTCCTCCACAGCAGCAGCAGCTGGGGA
TGTTGCCTTCGTCGACGACGTTTGCTTCGGGGAGTAGCGGCACTAATCGC
AACCGGTCATTCTCGGAGTACTCTGCTACCAGCAGCCAGGGCCCCCAGCA
GCCGCAACATCAGCAGCAGCAGACGTTGCAGCAGCCATTCCCGTCCCCGG
CGGGTCAGGCCGCTCTTCCGCCACAACAGCAACAGCTTCGACAGCAACCT
CAACAACAGCAACAACAAGGTTCGATGTGGTGGCAGCCCCAGCCACAGGG
ACAGCCCATCCAGGGGCAGGCCCAACAAGGCTCCCAGCAACAGCCGCAGC
AGCAGCTGCAGCAGCAGCAGCAAGCTGCTGACCCGTTTACTGGGGGCATG
GGACCGGTAGCCGGGGATCCATTCGCGCAGGCGGAAGCTCCAGCGGGTCA
GGCTCCGAGAGTGAACAACCAGCTGAGGGGCGCGGCGGGATCAGGTAGCT
TCGACTCCGGCACAAGTCGAACACTGGCGGGCAATTCAGCCGACTCGTCG
GCGGGGTTCGGACAGGCTTTAATCACGACAGGGACTGGCGGAGAGAGCAA
GTACAATCCGTTCGACGACCCCCCAGCTGCTACGATGTTTGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11709:4..3000+

>mRNA_Ecto-sp13_S_contig11709.1476.1 ID=mRNA_Ecto-sp13_S_contig11709.1476.1|Name=mRNA_Ecto-sp13_S_contig11709.1476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11709:4..3000+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTGGCAACGAGGTGGCCCCGGACGTGGTTGATCAAACAAGAGATTT
GGTCCAGCAGGTCATCAAGAAGGTTGAGGATTTGGGCCAAAGCGGCAACC
CGGATGAGAAGGACCTGGACCGCTACTTAAAGGCGCACGACGACTTGCAG
ACGGTGCTACGCGTCTACGAAGGCGTTGTTGACGGCAGCGAGACCTTGCC
CCTCTCCCGCAGGGGCGGCGGCGGTGGCGCTAGAGGAACCGGCGAGGCGA
CGGCTGCCGCGGAGGCCGTGTTTGCCGCCACCGCCGCCGCCGCCAAGAGC
AATGGCACCGCCTACAGCGGCGACGACAATGCGGTCGAGAACGGCGGGGC
CGCAAAGAATGGTGCGGCGGGTGAGGGGACGGTGGCGGCCGCTGCTACCG
CCAGCGGAGGCAGGAGCAGTCCCGCACGGGGAAACCTGTTGGACCTCGAG
GAGAACACCCCGTTAGAGACATCTATGACCGGAGAAGGCGCCGGGGGGAT
GATGGTCGCGTACACCGATGGGCAGTTCATGGCCAGTACCTCGAACAGCG
TCGGGGGCGTGAGCGGTCTTGGTGGCGCGGGCTTCGATAGCTCGTCCGGC
GCTGGACAAGGGAGCGCGACCGCCAGCAACTACGCGAGCGCCAGCGACAC
CGGAGCGGTGTACGGCAGCAACCAGTTCGGGAGCATCAACTTCGGCAGCG
GCGGGGGTGGCGGAGACTTCTCGTCTGGCTTCGCCCCGAGGGACCCATTC
GCGGCGGCGTTCGGGGGCAGCGCGCCCAGCGTAGCGGCGCCGGATGTGCC
TCCGGGCGCGCCAGATGAGCCCGCCCCGCGCCCACTGCCGGCATTTTTCC
CCGGAGGCCTTCCCGGGAACCAGTCGTCGTCGATCGTCTCGGTGACGTCA
TCAAGCGCCACGAACCGGAACCAAGGCGTGCTGGGGGTCGCTCAGCAGCG
GCAGTCCCCGTCCACGGACTTCGGGTCTTGGATGTCGTCCAGGGGCGGGC
CGGGCGGGCCGGGGGACCCTTTCGCACCGTCCCGTTCCTCCGCGGGGTTC
GCGAACGGCCTCCTGGGGGTTCCCGGGCGCCACAAGCTGTACTCTCTCCA
CGAGTCGCCGTCTCTTGCTTCAAGCAACGGTGGCGGCGTCGGCAACGGTG
GTAGCGTGATGGCGCCCGGCTCGTCACTCTCTAGCAGCGTCGGCGGCGGC
GCGGGGGGGGGAGGCGGGGCCTTCAACCCTTTCGAGATGACCTCAGGGGT
TGCTGCGCCCGCTGCGAGGGCCGAAACGACGGATCCGCTCTCGGCTGGAG
CTAACGGCACCGGAGGCGGGGTTCTCGCTGTCGGGGCAGCAGGAGGGTTT
CTTCCTCCACAGCAGCAGCAGCTGGGGATGTTGCCTTCGTCGACGACGTT
TGCTTCGGGGAGTAGCGGCACTAATCGCAACCGGTCATTCTCGGAGTACT
CTGCTACCAGCAGCCAGGGCCCCCAGCAGCCGCAACATCAGCAGCAGCAG
ACGTTGCAGCAGCCATTCCCGTCCCCGGCGGGTCAGGCCGCTCTTCCGCC
ACAACAGCAACAGCTTCGACAGCAACCTCAACAACAGCAACAACAAGGTT
CGATGTGGTGGCAGCCCCAGCCACAGGGACAGCCCATCCAGGGGCAGGCC
CAACAAGGCTCCCAGCAACAGCCGCAGCAGCAGCTGCAGCAGCAGCAGCA
AGCTGCTGACCCGTTTACTGGGGGCATGGGACCGGTAGCCGGGGATCCAT
TCGCGCAGGCGGAAGCTCCAGCGGGTCAGGCTCCGAGAGTGAACAACCAG
CTGAGGGGCGCGGCGGGATCAGGTAGCTTCGACTCCGGCACAAGTCGAAC
ACTGGCGGGCAATTCAGCCGACTCGTCGGCGGGGTTCGGACAGGCTTTAA
TCACGACAGGGACTGGCGGAGAGAGCAAGTACAATCCGTTCGACGACCCC
CCAGCTGCTACGATGTTTGGAGGA
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