mRNA_Ecto-sp13_S_contig101135.144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101135.144.1
Unique NamemRNA_Ecto-sp13_S_contig101135.144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A6H5JKX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.840e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144
            GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV
Sbjct:  446 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 493          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A835YJQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.590e-14
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144
            GL+ALG+SG  VLSFIVF+CSFVPV GVF+STLPM VAALG+YG+SKV
Sbjct:  365 GLLALGISGAWVLSFIVFICSFVPVAGVFLSTLPMVVAALGEYGVSKV 412          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A353GI09_9BACT (Uncharacterized protein n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GI09_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 2.170e-7
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144
            GLI LGV    VLS IVFLCSF+PV+GVFIST P+ + AL  +G+S V
Sbjct:  289 GLIVLGVPSLAVLSLIVFLCSFIPVLGVFISTTPIVLVALNAHGLSCV 336          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A7S2DSY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSY6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141
            GLI L +    VLS IVF+CSF+P IG+ +STLPM V AL +YGM K
Sbjct:  295 GLIFLKIPAVGVLSLIVFICSFIPAIGILLSTLPMLVIALNEYGMQK 341          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: M2VTE1_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTE1_GALSU)

HSP 1 Score: 53.5 bits (127), Expect = 5.570e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141
            GL+ L + G   LSFIV +CSF+PV+GVFIST PM V A+ +YG+ K
Sbjct:  376 GLMFLRIPGIGFLSFIVLICSFIPVVGVFISTFPMIVVAISEYGIQK 422          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A6V1PBQ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PBQ1_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.460e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144
            GL+ L + G +++S +VF+CSF+P+ G+ IST PM   AL +YG+ KV
Sbjct:  174 GLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKV 221          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A7S3XQP3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQP3_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.650e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144
            GL+ L + G +++S +VF+CSF+P+ G+ IST PM   AL +YG+ KV
Sbjct:  422 GLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKV 469          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: F9ZFK9_9PROT (Uncharacterized protein n=5 Tax=Nitrosomonas TaxID=914 RepID=F9ZFK9_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 9.330e-6
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMS 138
            GL+ LG+    +LS IVF+CSF+PV+GVFIST PM + AL   G++
Sbjct:  282 GLVILGIPSVALLSLIVFVCSFIPVLGVFISTTPMVLVALNTGGLT 327          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A1H2W3W4_9PROT (Uncharacterized protein n=6 Tax=Nitrosomonas TaxID=914 RepID=A0A1H2W3W4_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 9.330e-6
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMS 138
            GLI LG+    +LS IVF+CSF+PV+GVFIST PM + AL   G++
Sbjct:  285 GLIILGIPSVALLSLIVFVCSFIPVLGVFISTTPMVLIALNTGGLT 330          
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A2V3IVJ3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVJ3_9FLOR)

HSP 1 Score: 50.1 bits (118), Expect = 9.340e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141
            GL+ L + G   LS +  +CSF+PV GVF+STLPM + AL +YG +K
Sbjct:  330 GLLVLSIPGIGFLSVVTLVCSFIPVAGVFVSTLPMCIIALSEYGAAK 376          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JKX4_9PHAE1.840e-19100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJQ5_9STRA2.590e-1479.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A353GI09_9BACT2.170e-762.50Uncharacterized protein n=1 Tax=Candidatus Sumerla... [more]
A0A7S2DSY6_9STRA5.560e-759.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
M2VTE1_GALSU5.570e-757.45Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A6V1PBQ1_HETAK3.460e-647.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XQP3_HETAK3.650e-647.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F9ZFK9_9PROT9.330e-654.35Uncharacterized protein n=5 Tax=Nitrosomonas TaxID... [more]
A0A1H2W3W4_9PROT9.330e-656.52Uncharacterized protein n=6 Tax=Nitrosomonas TaxID... [more]
A0A2V3IVJ3_9FLOR9.340e-651.06Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101135contigEcto-sp13_S_contig101135:355..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score88.6
Seed ortholog evalue8.7e-16
Seed eggNOG ortholog2880.D7FXE7
Model size144
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.AI-2E family transporter
EggNOG OGs2RYYV@2759,COG0628@1
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.5713012-CDS-Ecto-sp13_S_contig101135:354..4981681462508.5713012-CDS-Ecto-sp13_S_contig101135:354..498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101135 355..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101135.144.1prot_Ecto-sp13_S_contig101135.144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101135 355..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101135.144.1

>prot_Ecto-sp13_S_contig101135.144.1 ID=prot_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV
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mRNA from alignment at Ecto-sp13_S_contig101135:355..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101135.144.1 ID=mRNA_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101135:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGATCGCCCTGGGTGTGAGCGGGCCACTAGTGCTGTCCTTCATCGT GTTCCTCTGCAGCTTTGTGCCTGTCATCGGCGTCTTTATCTCCACCCTGC CAATGGCTGTCGCTGCTCTGGGTGACTACGGCATGTCCAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101135:355..498-

>mRNA_Ecto-sp13_S_contig101135.144.1 ID=mRNA_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101135:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGATCGCCCTGGGTGTGAGCGGGCCACTAGTGCTGTCCTTCATCGT
GTTCCTCTGCAGCTTTGTGCCTGTCATCGGCGTCTTTATCTCCACCCTGC
CAATGGCTGTCGCTGCTCTGGGTGACTACGGCATGTCCAAGGTA
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