mRNA_Ecto-sp13_S_contig101133.143.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101133.143.1
Unique NamemRNA_Ecto-sp13_S_contig101133.143.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101133.143.1 vs. uniprot
Match: UPI0014223FCA (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014223FCA)

HSP 1 Score: 257 bits (656), Expect = 1.450e-78
Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 1 
Query:    1 LAARGAGSGQQVDLGRAAMTGTFGMGFEGALMAFQRIPGLRAVFGNPALYRQGSGLTDRGRAILRESGINPDEFSPAMAEQFAAAARQTDDVAAAARQAEAQTLPSPVTLSGAQASRNPTAMALESEAKKGVLGPENQSLLLDTQAQQQAALRGNIPAIQ 480
            LAARGAGSGQQVDLGRAAMTG  GMGFEGALMA QRIPGLRAVFG+PALYRQGSGLTDRGR ILR+SGINPDE SPAMA+Q +A ARQTDDVAAAARQAEAQTLP+PV+L+GAQA+RNPTAMALE EAKKGVLG E QSLLLDTQAQQQAALRGNIPAIQ
Sbjct:  219 LAARGAGSGQQVDLGRAAMTGATGMGFEGALMALQRIPGLRAVFGSPALYRQGSGLTDRGRNILRDSGINPDEISPAMADQLSAIARQTDDVAAAARQAEAQTLPNPVSLTGAQAARNPTAMALEGEAKKGVLGQEAQSLLLDTQAQQQAALRGNIPAIQ 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101133.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0014223FCA1.450e-7888.75hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101133contigEcto-sp13_S_contig101133:26..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size480
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.5414126-CDS-Ecto-sp13_S_contig101133:25..5051681462508.5414126-CDS-Ecto-sp13_S_contig101133:25..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101133 26..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101133.143.1prot_Ecto-sp13_S_contig101133.143.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101133 26..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101133.143.1

>prot_Ecto-sp13_S_contig101133.143.1 ID=prot_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
LAARGAGSGQQVDLGRAAMTGTFGMGFEGALMAFQRIPGLRAVFGNPALY
RQGSGLTDRGRAILRESGINPDEFSPAMAEQFAAAARQTDDVAAAARQAE
AQTLPSPVTLSGAQASRNPTAMALESEAKKGVLGPENQSLLLDTQAQQQA
ALRGNIPAIQ
back to top

mRNA from alignment at Ecto-sp13_S_contig101133:26..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101133.143.1 ID=mRNA_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101133:26..505+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGGCCAGGGGCGCGGGCTCCGGGCAGCAAGTCGACCTGGGTAGGGC
CGCAATGACGGGCACTTTCGGCATGGGTTTTGAGGGGGCCCTGATGGCCT
TCCAGCGCATTCCAGGTCTTCGGGCTGTATTCGGCAACCCCGCGCTTTAC
CGGCAGGGAAGCGGCCTCACAGACCGGGGCCGGGCCATCCTTCGGGAAAG
CGGTATCAACCCGGATGAGTTTTCCCCTGCTATGGCCGAACAATTCGCAG
CCGCCGCCCGGCAAACCGATGACGTTGCGGCAGCGGCCCGGCAGGCAGAG
GCGCAGACCTTGCCCAGCCCGGTAACGCTGTCCGGTGCCCAGGCTTCACG
CAACCCCACCGCTATGGCGCTTGAGAGCGAAGCAAAAAAGGGTGTTCTGG
GACCAGAAAACCAGAGCCTCTTGCTTGATACCCAGGCCCAGCAACAAGCG
GCCCTGAGGGGCAATATCCCCGCTATCCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101133:26..505+

>mRNA_Ecto-sp13_S_contig101133.143.1 ID=mRNA_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101133:26..505+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGGCCAGGGGCGCGGGCTCCGGGCAGCAAGTCGACCTGGGTAGGGC
CGCAATGACGGGCACTTTCGGCATGGGTTTTGAGGGGGCCCTGATGGCCT
TCCAGCGCATTCCAGGTCTTCGGGCTGTATTCGGCAACCCCGCGCTTTAC
CGGCAGGGAAGCGGCCTCACAGACCGGGGCCGGGCCATCCTTCGGGAAAG
CGGTATCAACCCGGATGAGTTTTCCCCTGCTATGGCCGAACAATTCGCAG
CCGCCGCCCGGCAAACCGATGACGTTGCGGCAGCGGCCCGGCAGGCAGAG
GCGCAGACCTTGCCCAGCCCGGTAACGCTGTCCGGTGCCCAGGCTTCACG
CAACCCCACCGCTATGGCGCTTGAGAGCGAAGCAAAAAAGGGTGTTCTGG
GACCAGAAAACCAGAGCCTCTTGCTTGATACCCAGGCCCAGCAACAAGCG
GCCCTGAGGGGCAATATCCCCGCTATCCAG
back to top