mRNA_Ecto-sp13_S_contig10113.142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10113.142.1
Unique NamemRNA_Ecto-sp13_S_contig10113.142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A6H5JHM9_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM9_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 4.120e-170
Identity = 245/261 (93.87%), Postives = 248/261 (95.02%), Query Frame = 1
Query:   22 QQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPSEDSLQLHGQSFEQDEEGHSERFSSVIAGVDVGDADGYYS 804
            +QLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAE AASLDSLSREPKNMVVVKSPRSRDTLDRLLG TNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSW GDIEPLLEYYTERTPGAVIESR V +    RDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKP EDSLQLHGQSFE DEEGH E FSSVIAGVD+GDADGYYS
Sbjct:  142 RQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAETAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWIGDIEPLLEYYTERTPGAVIESREVSMAWHYRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPPEDSLQLHGQSFE-DEEGHGECFSSVIAGVDIGDADGYYS 401          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.290e-70
Identity = 143/242 (59.09%), Postives = 146/242 (60.33%), Query Frame = 1
Query:   79 KEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPSEDSLQLHGQSFEQDEEGHSERFSSVIAGVDVGDADGYYS 804
            +  +  SFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLG TNCVLAAEHGAFIRWGKHA WQ                                                                                        VSHFLEIVVTRFRRLLKSK SEDSLQLHGQSFEQDEEGH ERFSSVIAGVD+GDADGYYS
Sbjct:  682 EREIRQSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQ----------------------------------------------------------------------------------------VSHFLEIVVTRFRRLLKSKRSEDSLQLHGQSFEQDEEGHGERFSSVIAGVDIGDADGYYS 835          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.720e-57
Identity = 123/266 (46.24%), Postives = 150/266 (56.39%), Query Frame = 1
Query:    4 WCKRFVQQLHDANEGWVRTTARLLQKEHVVM---------------------------------SFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKN-----------MVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIE-PLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRR 666
            W  R ++QL   NEG  RTTARLL KEHVV                                  +F +SR RL+  NLEGVLARA +LPEL+ +P +   SL  LS                +VVVKSPRSR+ L+R LG TNCVLAAEHGA +RW  ++ W+  LP +D SW  +I+ PL    T     AV            RDCDLGHGAWQAKQLHVSLLQ+++ LPI VYAGD+VLEI+PQ M   +  FL+ VVTR R+
Sbjct:  943 WSTRSMRQLVKGNEGGERTTARLLHKEHVVQPAECTVAAHLISMLTARFAYLTXXXXXXXXXXXAFAFSRCRLIVLNLEGVLARATSLPELLTVPPDVLESLRLLSEXXXXXXXXXXXXXXXVVVVKSPRSREALERCLGQTNCVLAAEHGALMRWSLNSRWEAQLPGLDTSWLREIQNPLDVIKTREVSVAVXXXXXXXXAWHYRDCDLGHGAWQAKQLHVSLLQMARNLPIIVYAGDRVLEILPQAMLGHLDSFLDNVVTRVRQ 1208          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A7S1UL28_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL28_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.720e-54
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 1
Query:    4 WCKRFVQQLHDANEGWVRTTARLLQKEHVVMSFMYSRW-RLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQ 609
            W +RF++QL +AN    R+  R L +E V+ +++ S   R++   LEGV+A AC LPEL+ I A   A+L++L   P N VV+ S RS +++D LLG+ N VL AE G FI+WGK + W+  +P +D SW  D+E +LEYYTERTPG+ +ES+   +    RDCDLGHGAWQAKQL VSL  LS+RLP  VY+G+K++E+  Q
Sbjct:  559 WSERFLEQLAEANGDESRSPCRELHREQVLNAYVSSTSARVLVLGLEGVIAPACTLPELLTIGAAEYAALEALCANPTNAVVIVSTRSPESIDALLGNLNAVLVAESGWFIKWGKGSAWECQVPYLDTSWRDDVERVLEYYTERTPGSFMESKSHSIAWHFRDCDLGHGAWQAKQLQVSLTNLSRRLPFCVYSGNKMIEVAQQ 761          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A8J2X0D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.830e-44
Identity = 94/227 (41.41%), Postives = 142/227 (62.56%), Query Frame = 1
Query:    4 WCKRFVQQLHDANEGWV-RTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNM-VVVKSPRSRDTLDRLLGHTNC---VLAAEHGAFIRWGKHAHWQPLLPN--VDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFR 663
            W +RF+ QL +A E    RT  R L    +   +  ++ R++   LEGVLA+  AL EL+ +P +    L++L  +P+N  VV+ S RS +TL ++    NC   VLAAE G  IRWG +  ++  + +  +D+SW  D EPL+ YYTERTPG+V+E +   L    RDCDL HGAWQA+QL V+L +L+K +P+SV++GDK +E+ P  M + V + LE+ + +F+
Sbjct:  650 WARRFLDQLQEAAETKASRTLCRELTVPQLTAPYTKTKRRVIVLELEGVLAKPTALAELIDVPVKILNYLEALCNDPQNRAVVILSARSAETLSKIFEGINCDSLVLAAEEGLSIRWGPNEPFEMQVSDFDLDLSWLDDAEPLIAYYTERTPGSVVERKVSGLAWHYRDCDLNHGAWQARQLQVALGELAKHVPLSVFSGDKFIEVRP--MRLSVPNVLELTLKKFQ 874          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A3F2S1Y1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1Y1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.370e-44
Identity = 85/209 (40.67%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618
            W   F++QLH+ +E   +  + R L +  +  ++  S  RL+  N EGVLA   ++PEL + P E    L  L+++P+N VV+ S RS    ++       N VLAAE+G +++W GK+ +W  ++PN+D SW   + PLLEYYTERTPGA IE +   +    RDCDL HG WQA +L VSL ++++ LP+SV  G++ LE+ PQ+++
Sbjct:  253 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSHRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 461          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A421GJV8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GJV8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 8.210e-44
Identity = 85/209 (40.67%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618
            W   F++QLH+ +E   +  + R L +  +  ++  S  RL+  N EGVLA   ++PEL + P E    L  L+++P+N VV+ S RS    ++       N VLAAE+G +++W GK+ +W  ++PN+D SW   + PLLEYYTERTPGA IE +   +    RDCDL HG WQA +L VSL ++++ LP+SV  G++ LE+ PQ+++
Sbjct:  175 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSHRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 383          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: W2FY48_PHYPR (Trehalose-phosphatase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FY48_PHYPR)

HSP 1 Score: 167 bits (424), Expect = 1.370e-43
Identity = 86/209 (41.15%), Postives = 131/209 (62.68%), Query Frame = 1
Query:    4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618
            W   F++QLH+ +E   +  + R L +  +  ++  S  RL+  N EGVLA   ++PEL + P E    L  L+++P+N VV+ S RS    ++       N VLAAE+G +++W G++ HW  ++PN+DMSW   + PLLEYYTERTPGA IE +   +    RDCDL HG WQA +L VSL ++++ LP+SV  G++ LE+ PQ+++
Sbjct:  531 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAVEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEHWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKDSSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 739          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A329SM09_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SM09_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.390e-43
Identity = 85/209 (40.67%), Postives = 131/209 (62.68%), Query Frame = 1
Query:    4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618
            W   F++QLH+ +E   +  + R L +  +  ++  S  RL+  N EGVLA   ++PEL + P E    L  L+++P+N VV+ S RS    ++       N VLAAE+G +++W G++ +W  ++PN+DMSW   + PLLEYYTERTPGA IE +   +    RDCDL HG WQA +L VSL ++++ LP+SV  G++ LE+ PQ+++
Sbjct:  531 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEYWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 739          
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A3M6VHA7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHA7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.400e-43
Identity = 87/209 (41.63%), Postives = 129/209 (61.72%), Query Frame = 1
Query:    4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618
            W  +F++QLH+  E   V  + R L +  +  ++  S  RL+  N EGVLA   ++PEL + P E    L  L+ +P+N VV+ S RS    ++       N VLAAE+G +++W G +  W  L+PN+DMSW   I PLLEYYTERTPGA IE +   +    RDCDL HG WQA +L VSL ++++ LP+S+Y G++ LE+ P++++
Sbjct:  534 WADKFLEQLHECREENAVSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAVEASIPELAYPPQELIWQLSMLTSDPRNTVVLVSARSMSVCEQWFAELSGNLVLAAEYGVYVKWIGDNEGWHCLVPNMDMSWWEHILPLLEYYTERTPGAYIERKDSSIAWHYRDCDLDHGLWQASELLVSLREITRSLPVSLYPGNRYLEVRPEKVS 742          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHM9_9PHAE4.120e-17093.87GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G2K2_ECTSI1.290e-7059.09Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A836CRD5_9STRA5.720e-5746.24Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S1UL28_9STRA4.720e-5449.26Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A8J2X0D0_9STRA3.830e-4441.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3F2S1Y1_9STRA4.370e-4440.67Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A421GJV8_9STRA8.210e-4440.67Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
W2FY48_PHYPR1.370e-4341.15Trehalose-phosphatase n=2 Tax=Phytophthora parasit... [more]
A0A329SM09_9STRA4.390e-4340.67Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
A0A3M6VHA7_9STRA4.400e-4341.63Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10113contigEcto-sp13_S_contig10113:171..4103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score172.6
Seed ortholog evalue2.6e-40
Seed eggNOG ortholog67593.Physo128418
Model size804
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K03937,ko:K16055
KEGG TC3.D.1.6
KEGG ReactionR02737,R02778
KEGG Pathwayko00190,ko00500,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00500,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Trehalose-phosphatase
EggNOG OGs3QCMS@4776,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
Cds size804
COG Functional cat.G
CAZyGT20
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10113.142.1prot_Ecto-sp13_S_contig10113.142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10113 171..4103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.4338882-CDS-Ecto-sp13_S_contig10113:170..2661681462508.4338882-CDS-Ecto-sp13_S_contig10113:170..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 171..266 +
1681462508.4574175-CDS-Ecto-sp13_S_contig10113:688..8201681462508.4574175-CDS-Ecto-sp13_S_contig10113:688..820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 689..820 +
1681462508.4692183-CDS-Ecto-sp13_S_contig10113:1467..15991681462508.4692183-CDS-Ecto-sp13_S_contig10113:1467..1599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 1468..1599 +
1681462508.4794219-CDS-Ecto-sp13_S_contig10113:2230..23231681462508.4794219-CDS-Ecto-sp13_S_contig10113:2230..2323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 2231..2323 +
1681462508.490063-CDS-Ecto-sp13_S_contig10113:2944..30791681462508.490063-CDS-Ecto-sp13_S_contig10113:2944..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 2945..3079 +
1681462508.501414-CDS-Ecto-sp13_S_contig10113:3551..36861681462508.501414-CDS-Ecto-sp13_S_contig10113:3551..3686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 3552..3686 +
1681462508.5127969-CDS-Ecto-sp13_S_contig10113:4022..41031681462508.5127969-CDS-Ecto-sp13_S_contig10113:4022..4103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10113 4023..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10113.142.1

>prot_Ecto-sp13_S_contig10113.142.1 ID=prot_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
LWCKRFVQQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVL
ARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTN
CVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVI
ESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEI
IPQEMNVQVSHFLEIVVTRFRRLLKSKPSEDSLQLHGQSFEQDEEGHSER
FSSVIAGVDVGDADGYYS
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mRNA from alignment at Ecto-sp13_S_contig10113:171..4103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10113.142.1 ID=mRNA_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10113:171..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGGTGCAAGCGTTTCGTGCAGCAGCTCCACGACGCCAACGAGGGCTG GGTGCGGACCACCGCGCGTCTCCTCCAGAAGGAGCACGTCGTCATGGTAA GAGTCCTTTTCTTTGGTAGTACAGTCGTGGCATCGACCGCACTAGCCGGC GGACCGATGAAAATACGCCAGTCTCAGAGCGGTGGACAACATGTGTGTGT GTGTGAGAGAGGGAGAGGGAGAGAGAGGGAGAGAGAAAGAGAGAGAGAGA GATGCCGCCCGCTCCAATTGCGGCGTAGGCATTGCTCGACGGAGGGCAGA ACGGTGGCACATCTTCGTCAGTCTGTCAGTCAGCAGTTTGTCAAAGTCAT CCATTCCTTCATTCGCAACCTTCCTGGTGACGGTCTCCGTTCACTGCCAC ACTCGTGAGCACGTGCACGCAGGGCAGGCGCACACAAGCTCTCACCACCG CACTCCCGCCCCACCACTCTCCGTAACGTTCATCATCCGCCACCTCCCTT TCTTTTTCCCGGCGGCAGTCGTTCATGTACAGCCGTTGGCGCCTTGTGGC GTTCAATCTCGAGGGCGTGTTGGCGAGGGCCTGCGCCCTGCCGGAGCTGG TGCACATCCCGGCGGAGGCGGCCGCGTCGTTGGACTCCCTATCGAGGGAG GTAAAAAAAAATAAAATGCACGAAAAAAAGAAAAATGGGAGAGACTCCCT GTCGAGGGAGGGATAAAAAAAGAAACATGTTGTTGGCGCAACATCTACTT CGTGGGAGACATTGCCGTTGCTGCCACTGCTGCGGGTGTGGAGTGGAGAA TAGCAAAAATATATCAAAATGTGTGCGCGTATTTGTATAGTAGCAGAGGT TGATAGTGGACGACTAACTCTTCTTGGTGTATGTTTGGGTGCGGTCGCGA GAAGGAACACGTAGTCAAGCGGGGCAGTAGTTCCGAAAAAAGACAAGAAT CCCCTCTTCGCGTTGACTTTCAAAGTAAGCGAAAAACATGAGAGTAAATA CAGTGATGGTGGGGGCATACCTTGATTTTTTTTGTTTCTCCCGTCGTTCA ACGAAGCGATGCCCGAACCCGGGAGAGAGTGTTCGTTTCTTTCCGATTTA TCCCTTCGTGACGTTACTGCTCTTCAGAGGGTTACATGCCGTGGGTTTCG CCGTCGTGCTTGATTCTCTCTACTTTCTAGTTTCCTCGACCCCCCTCTCC TCGATCTTTGGCGTTCCTTCTCGGCTTGGTTGTTGTTGCTGTTGCTGTTG TCATAGCGGTATTGCTCTTACACTGTTTGTTTCTTCCCTGCTTGCAGCCC AAGAACATGGTCGTGGTGAAGAGCCCTCGGAGCCGAGACACGCTGGATCG CCTTCTGGGCCACACGAACTGCGTGCTCGCTGCCGAGCACGGAGCCTTCA TCCGATGGGGGAAGCACGCTCATTGGCAGGTATGTATAGAACAGTGCGGT AACAGGCAGTACTGTGCGCGATCCATGCTCGGAAGTATGTTGTCGTGTCT CGGTCTTGCTCTTTTGGTCCAATGACTGGTCAGGCAGGAGAACGTGGTGT GTTGGTCGTTGTTGTTGTGGGGATAGAGTCGTATTGTTGGTGATGTTTTT GGTGGTGGTCGTGGTGGTGATGGTGATGGTGGTGGTGGTGGTGGTGATGG TGGTAGTGCTGGTGGTGCTGGTGGTGGTGGTGGTGGAGGCTTCACAAAAA GGACGGCCAAACTTGTAGCGAGTTGTCGTTGATTGCAGTGGTTTTGTTGT TGTTGGTGGTGATGGTCGTGGTGGTGATACTGATATTTGTGCTGGCTGCA CGAAAAGGACGGCCAGACCTCTAGCCAGTCGTCGTTGTTGTTTATGGTGG TATTGGTGTTGGTGGTGGTGGTGGTGATGTTTATGTTGATATTAGTGCTG GCTTCACCAGAAGGACGGCCAGACGCGTAGCCAATCGTCTTTGTCGTTGT TGGCGATAGTGGCCCCCGATGCCGCTGTTTCTGGTACCCTTGTTGAACCG TTTTGTGTCTGACCGCACCCCTCGCGTACGTTTGTTTCCTGTTGGTTGCT CCTGTGCCAGCCGCTGCTGCCTAACGTGGATATGAGCTGGACGGGGGATA TCGAGCCCCTTCTGGAGTACTACACGGAACGCACACCAGGGGCCGTGATC GAGGTGAGACTTTGAAAAAAGAAAAGAAAAAACAAGGATGCAAGGTGGGT TTTGTGTCTCTGTTTTCTTTGTCGAGCACCCCTTCCATTCGTGGCCATTC GTTTCCGAGTTCGGATATAATGAGAGTAAGATGTCTTCTGTTGCAAGAGA CAAGGACAGAGGAAACCCCTCATTGATTTTCGAGTGAACAACCAAGTCCT GGTCATCGCGAAACTAGCGTCGACATGTTTTTGCCTCCGCCCCGCTTCTC CATCCCACCGACTCGACCAGCCACGAGGCCCGCGACTGCTTATACGCCAA ACCGACGTTACTGGCGATGGCGACCGACGGCTACACCAACGTTGGCGTTG ATTTTTTTTTTGTTCTTCTGGAAACCCCACAGAGGCACGTTTCGCTCGGG CTTTTGTGATTCTACCGTTCGGGGTCATTCCATTTTCTCAGCACCACGAC GCCCAGGCATAGCAGTGAGTACCCTCCTCCACTCCGCACGTTCAATGGTC TACACAACTATTGAGGCATGCCAAACGTGAGAACACACAGCCCCGTGCGA GCGCCCCCCCCCCCCCCCCCCCCCCTTCTCATACCAGACAAAACACCAAA AAAATAAACGCGCAAAAAAAAAAGAGCCGGTGGGTGTGTTTGGTAGCGCC CATCCGGGACTGCGACCTCGGACACGGGGCATGGCAGGCCAAGCAGCTAC ATGTCTCCCTACTGCAGCTGTCCAAGCGCCTGCCCATCAGCGTCTACGCG GGAGACAAGGTGGGGCAGGGGGCGGATCGAGCAGCAACGTGTACACCTTC TACCATGGCTAGAAGGGGGGGTAGTGGTGGGGTTTTTCTTGGCTCGGGGA CGTGTTTGTTTGGGCCTTCAATGAAAAGCGTTAGCGTTCTACGTGTTTCG ACCTTTTCGCTGTGCCGACGAAGACTCACGCTGGCCGTTCTAGCAGCGCT GATTCTGATTCGCCGAGGCAAGCCTAAGCCTGCGATCCCTTTTCGGCCCC CCTCTCTGCCTGTGTGTGTAGTGCCCGCTTTTGTGGCTGCCCGTGGGCCG TCTGCCCTATCTTCCTCTCTCTCTCTAGTCTCTCTCTCTGTCACTCTTTT TTTGTCTCTGTCTCTCTCTGTCGTTCTGTCTCCGTGTCTCTGTCACTATG TCTCTGTCTCTGTCTCTGTCTCTCTAACTCTCCCTCTCTATCAATCTCTC TCTCTCTCTCTGACATTCTCGCGGAGCAAAGGTGCTAGAGATCATACCAC AGGAGATGAACGTGCAGGTTTCCCACTTCCTGGAGATCGTGGTTACCCGG TTCCGCAGGCTGCTCAAGTCCAAGCCGTCCGAAGACAGCCTCCAGTTGCA CGGACAAAGTTTCGAGGTTTGTGTGGGTGGGTGTGTTTTCTGAACTGACG AAATTACAGAACAAGTAATTAAAACAACGAGAAATGCGAGGTTCTGTACT GTTGCCAGTGTCAGCTGGCTAGCGGTATCCAACATCTCTCTCGCGTTGAA TCAGAGTACTTTGTGGCAAATTGCTGGCTGGCTAGCGGCATCCTCTCTCG CTCTCTCTCCCTCGTGTGTTTTTGACCCACAGTTCTTGCCCTTTCTTGCT TCGTGATTTCAATCTTGCTTGCTTGTTGCGTTTCTTCCATGGTGCATCCC ATCCCATCCCATCCCATCTCATCTTATCCCATCTCGTCCTGTCCAATCAC AGCAGGACGAGGAGGGCCACAGCGAGCGTTTCTCGAGCGTCATCGCCGGC GTCGACGTCGGAGATGCAGACGGCTACTACAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10113:171..4103+

>mRNA_Ecto-sp13_S_contig10113.142.1 ID=mRNA_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10113:171..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGGTGCAAGCGTTTCGTGCAGCAGCTCCACGACGCCAACGAGGGCTG
GGTGCGGACCACCGCGCGTCTCCTCCAGAAGGAGCACGTCGTCATGTCGT
TCATGTACAGCCGTTGGCGCCTTGTGGCGTTCAATCTCGAGGGCGTGTTG
GCGAGGGCCTGCGCCCTGCCGGAGCTGGTGCACATCCCGGCGGAGGCGGC
CGCGTCGTTGGACTCCCTATCGAGGGAGCCCAAGAACATGGTCGTGGTGA
AGAGCCCTCGGAGCCGAGACACGCTGGATCGCCTTCTGGGCCACACGAAC
TGCGTGCTCGCTGCCGAGCACGGAGCCTTCATCCGATGGGGGAAGCACGC
TCATTGGCAGCCGCTGCTGCCTAACGTGGATATGAGCTGGACGGGGGATA
TCGAGCCCCTTCTGGAGTACTACACGGAACGCACACCAGGGGCCGTGATC
GAGAGCCGGTGGGTGTGTTTGGTAGCGCCCATCCGGGACTGCGACCTCGG
ACACGGGGCATGGCAGGCCAAGCAGCTACATGTCTCCCTACTGCAGCTGT
CCAAGCGCCTGCCCATCAGCGTCTACGCGGGAGACAAGGTGCTAGAGATC
ATACCACAGGAGATGAACGTGCAGGTTTCCCACTTCCTGGAGATCGTGGT
TACCCGGTTCCGCAGGCTGCTCAAGTCCAAGCCGTCCGAAGACAGCCTCC
AGTTGCACGGACAAAGTTTCGAGCAGGACGAGGAGGGCCACAGCGAGCGT
TTCTCGAGCGTCATCGCCGGCGTCGACGTCGGAGATGCAGACGGCTACTA
CAGC
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