mRNA_Ecto-sp13_S_contig11577.1374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11577.1374.1
Unique NamemRNA_Ecto-sp13_S_contig11577.1374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: D7FYN0_ECTSI (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.170e-32
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    1 QKQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYWFAGQ 177
            ++QKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGL ATVAFGYWFAGQ
Sbjct:  101 EEQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLWATVAFGYWFAGQ 159          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A836CCB5_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.690e-27
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 QKQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYWFAGQ 177
            ++QK+GFVCPQCRGPRRRFAKKVG++VGITQDGGDA ILLFSFLG  ATVAFG+WF+ Q
Sbjct:   83 EQQKKGFVCPQCRGPRRRFAKKVGDKVGITQDGGDAGILLFSFLGFAATVAFGFWFSQQ 141          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A6U4H457_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4H457_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-20
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 QKQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYWF 168
            ++Q RGF CPQCRGPRRR+AKKVG++VG+T DGGDAPILLFS+ GL A V FG+W+
Sbjct:   83 EEQPRGFRCPQCRGPRRRYAKKVGDRVGLTLDGGDAPILLFSYGGLIAVVVFGFWY 138          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: K0SZD0_THAOC (Rubredoxin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZD0_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 3.210e-19
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF GL AT+AFG W
Sbjct:   91 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGLAATIAFGVW 140          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A1Z5KJZ7_FISSO (Rubredoxin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJZ7_FISSO)

HSP 1 Score: 82.0 bits (201), Expect = 1.230e-18
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPILLFSF G+ AT+AFG W
Sbjct:   75 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGVIATIAFGIW 124          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A7S2SV90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV90_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.770e-18
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 QKQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYWFA 171
            ++Q RGF CPQC GPRRR+AKK+G+ VG+T DGGD PILLFSFLG+  T A G++F+
Sbjct:   99 EEQTRGFKCPQCSGPRRRYAKKIGDTVGVTLDGGDGPILLFSFLGIIVTFALGFYFS 155          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: B8BU96_THAPS (Rubredoxin-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU96_THAPS)

HSP 1 Score: 81.6 bits (200), Expect = 2.860e-18
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPILLFSF GL AT+ FG W
Sbjct:   95 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGLIATIVFGVW 144          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A7S2YTJ7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTJ7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.860e-18
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF G+ AT+AFG W
Sbjct:   93 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVIATIAFGIW 142          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A7S0Y7F5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7F5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.870e-18
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF G+  T+AFG W
Sbjct:   96 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVALTIAFGIW 145          
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Match: A0A1E7FRC9_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRC9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.610e-18
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   16 GFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATVAFGYW 165
            GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF G+  T+AFG W
Sbjct:  101 GFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVALTIAFGIW 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11577.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYN0_ECTSI2.170e-3294.92Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A836CCB5_9STRA7.690e-2781.36Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A6U4H457_9STRA1.300e-2071.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K0SZD0_THAOC3.210e-1976.00Rubredoxin-like domain-containing protein (Fragmen... [more]
A0A1Z5KJZ7_FISSO1.230e-1876.00Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2SV90_9STRA1.770e-1864.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BU96_THAPS2.860e-1876.00Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2YTJ7_9STRA3.860e-1874.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0Y7F5_9STRA5.870e-1872.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FRC9_9STRA6.610e-1872.00Rubredoxin-like domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11577contigEcto-sp13_S_contig11577:5182..5361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score119.8
Seed ortholog evalue4.4e-25
Seed eggNOG ortholog2880.D7FYN0
Model size180
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG OGs2E3DZ@1,2SAH1@2759
Cds size180
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462608.1932526-CDS-Ecto-sp13_S_contig11577:5181..53611681462608.1932526-CDS-Ecto-sp13_S_contig11577:5181..5361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11577 5182..5361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11577.1374.1prot_Ecto-sp13_S_contig11577.1374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11577 5182..5361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11577.1374.1

>prot_Ecto-sp13_S_contig11577.1374.1 ID=prot_Ecto-sp13_S_contig11577.1374.1|Name=mRNA_Ecto-sp13_S_contig11577.1374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
QKQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLGATV
AFGYWFAGQ*
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mRNA from alignment at Ecto-sp13_S_contig11577:5182..5361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11577.1374.1 ID=mRNA_Ecto-sp13_S_contig11577.1374.1|Name=mRNA_Ecto-sp13_S_contig11577.1374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11577:5182..5361- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAAACAGAAGCGTGGGTTTGTTTGCCCACAGTGCCGCGGCCCCCGCCG CCGGTTCGCGAAGAAGGTCGGCAACCAGGTGGGCATCACCCAGGACGGAG GCGATGCGCCCATCTTGCTTTTCTCCTTCCTCGGCCTGGGGGCTACCGTG GCGTTCGGCTACTGGTTCGCCGGGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11577:5182..5361-

>mRNA_Ecto-sp13_S_contig11577.1374.1 ID=mRNA_Ecto-sp13_S_contig11577.1374.1|Name=mRNA_Ecto-sp13_S_contig11577.1374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11577:5182..5361- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAAACAGAAGCGTGGGTTTGTTTGCCCACAGTGCCGCGGCCCCCGCCG
CCGGTTCGCGAAGAAGGTCGGCAACCAGGTGGGCATCACCCAGGACGGAG
GCGATGCGCCCATCTTGCTTTTCTCCTTCCTCGGCCTGGGGGCTACCGTG
GCGTTCGGCTACTGGTTCGCCGGGCAGTAG
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