mRNA_Ecto-sp13_S_contig11568.1365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11568.1365.1
Unique NamemRNA_Ecto-sp13_S_contig11568.1365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11568.1365.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.030e-50
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 3 
Query:    3 YMVYTLEEGDDSYLSPALNYTMDACGIGEDVCPVAGDDLHCPCVLGGSIQRCNTLECAEPGNDPGGTCGEFVLSTLSGCYCY 248
            YMVYTLEEGDDSYLSPALNYT+DACGIGEDVCP AGDDLHCPCVLGGSIQRC+TLECAEPG+DPGGTCGEFVLSTLSGCYCY
Sbjct:  163 YMVYTLEEGDDSYLSPALNYTIDACGIGEDVCPAAGDDLHCPCVLGGSIQRCDTLECAEPGDDPGGTCGEFVLSTLSGCYCY 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11568.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M6_ECTSI5.030e-5095.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11568contigEcto-sp13_S_contig11568:3292..4222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score175.3
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7G1M6
Model size249
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28SCF@1,2QZ1Z@2759
Cds size243
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.4338968-UTR-Ecto-sp13_S_contig11568:3291..32961681462607.4338968-UTR-Ecto-sp13_S_contig11568:3291..3296Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11568 3292..3296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.4554212-CDS-Ecto-sp13_S_contig11568:3296..33281681462607.4554212-CDS-Ecto-sp13_S_contig11568:3296..3328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11568 3297..3328 +
1681462607.4635463-CDS-Ecto-sp13_S_contig11568:3690..38801681462607.4635463-CDS-Ecto-sp13_S_contig11568:3690..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11568 3691..3880 +
1681462607.4715796-CDS-Ecto-sp13_S_contig11568:4201..42221681462607.4715796-CDS-Ecto-sp13_S_contig11568:4201..4222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11568 4202..4222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11568.1365.1prot_Ecto-sp13_S_contig11568.1365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11568 3297..4222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11568.1365.1

>prot_Ecto-sp13_S_contig11568.1365.1 ID=prot_Ecto-sp13_S_contig11568.1365.1|Name=mRNA_Ecto-sp13_S_contig11568.1365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MVYTLEEGDDSYLSPALNYTMDACGIGEDVCPVAGDDLHCPCVLGGSIQR
CNTLECAEPGNDPGGTCGEFVLSTLSGCYCY
back to top

mRNA from alignment at Ecto-sp13_S_contig11568:3292..4222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11568.1365.1 ID=mRNA_Ecto-sp13_S_contig11568.1365.1|Name=mRNA_Ecto-sp13_S_contig11568.1365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11568:3292..4222+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACATGGTATACACACTCGAAGAGGGCGATGATAGGTGGGTGAATACG
TCGATCGGGGAGGCGCGCCGGATGCATCGCGCTTCACCGAAACGAAACTC
CAGACGGTTGCTGCTTTTCTCTGTCCACCCTTCTCATGTGCTCCTCCTCG
ATGAATCCCGCACTTGGGGATACTGGTCGCCCGAAAACGAGACACACCTC
CTCCCAACCTTGGACAGCTGTCCCCGCTAATTCGTTCGGTACGTCACTCT
ACCACCAACCTTGGCCCCGACTCTGACCTATCGTTTCCCACGCGTGCCGT
TCTCTTGGACAATCAATACAACTAAAACCTTGTTTCGGTGTGTTGCTAAA
ACCTTGTTTCGGTGTGTTGCACGACACGTGCGCTGACGAAACGCGACAGT
TACCTGTCTCCGGCGTTGAACTACACGATGGACGCGTGCGGGATAGGGGA
AGACGTCTGCCCCGTGGCCGGGGACGACCTACACTGTCCTTGTGTTTTGG
GGGGAAGCATTCAGAGGTGCAACACGCTGGAGTGCGCGGAGCCCGGGAAT
GACCCCGGCGGAACATGCGGAGAATTCGTCTTGTCCACGGTGAGAAAGGA
GAGCGGTGCGGACGAGAATATTAGTCCATCGCCCGGTGCGGGTACGGGGA
AGTACGAGGGACCTCGCAATGGTTCCTGACGAACTCCATACCTTGTTCGG
CATGGCGTAATTAAAGGAGAGAGCCTCGCCCTCGCTCAACTGTACGACTG
TGAACATATTTCGCTTGAGCTGAAACTTCGTCGGGTTGGGGGTGCCTTGG
TGCCACGAACAATATTGTTGTGCTCCCCTGACAAAACGAGGATAGCCTCC
CCCAAATGCCGAGATGTACCTCTCAAGTTTTTCCTTGTCAAACCGATTGA
CGAACCACAGTTGTCGGGATGTTATTGTTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11568:3292..4222+

>mRNA_Ecto-sp13_S_contig11568.1365.1 ID=mRNA_Ecto-sp13_S_contig11568.1365.1|Name=mRNA_Ecto-sp13_S_contig11568.1365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11568:3292..4222+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATACACACTCGAAGAGGGCGATGATAGTTACCTGTCTCCGGCGTT
GAACTACACGATGGACGCGTGCGGGATAGGGGAAGACGTCTGCCCCGTGG
CCGGGGACGACCTACACTGTCCTTGTGTTTTGGGGGGAAGCATTCAGAGG
TGCAACACGCTGGAGTGCGCGGAGCCCGGGAATGACCCCGGCGGAACATG
CGGAGAATTCGTCTTGTCCACGTTGTCGGGATGTTATTGTTAC
back to top